Rh1AG052300

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001612
Physical Location & Seq
Forward (+)
8778533 .. 8779516
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG052300.1

Sequence Viewer

Length: 984 bp
ATGGGCTTTTCACCATTCTTCCCAAACCCTCTGTTTCCTCCTGTCAAAAACCCTAACAAGCGTCGTGCTTCACCGCCACCAAGTAAGAAGCAAAAGGTAGCTGATGATGAGATCGACACAGATCAAGAAGGCATTGAGCAACTCCGCGACGTCGTTTCGGTCAGTGGAGTCGATCTTGTGGAAGAGCAAGAGCGCATGCTGTTGCTTTCGGGGCCCAAGAAGCAGCAAGCATCTCGAAAACTTCTGCTTCAAGAAAACCAAGAAGGGCAGGTTTTGCAGAAGATTCCCCTGCAGAAAAAGTTGGCGGGAATCATGGGGAGGTGCGGTTTGAGAATTGGTGTAGACAAAGATGTGGAGAGATGCTTGTCAATGTGTGTGGAGGAGAGAATGAGGGGGATCATATGCAATTTGATTAGACAGTCGAAGCAGCGGGTTGATTGTGAAAAATCGAGACACCACACTGTTTCTACATCTGATGTGAAGGAAGAAATTATGATTCTCAACAAGAAAGATAGGGAAGAATTGCAGGAAACGGCTCAGAAGCTTAATGAAGCTAAGGTTAGCACTAATGGATTTGAGGGTGTTAAGGACAAACATGACGATGGAGATGACAAAATGAGGAGAAGTACAGCAGCAGCAAATGTTGCTGCCCTTGCTGCTCTTGGAGGACATGACATATTGGCGAAATGGCAACTTAAGGCGGATCAGCTGGCCCGGGAAAAGAGTCGAGGTAAAGATGTAAATCACAAGGCTACATCAACTGCTGGAAGAACAATGAATGGCAATGTAGAAGCTTTGGTGTCTGCAGCTGGAAGTGCTGTCGGAAAGTTTGGGAGGAATTGCCAAGTTATGATGATGCCCCAAACAAAGGTGGCTAGTACTCGTAGTATATCTGTCAAGGATGTGACTGCTGTTCTTGAAAAAGAACCTCAGATGTCCAAGTCTACTCTGATCTATTTACTAATGAACACTGCTAGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

327

Amino Acids

36.19

Weight (kDa)

9.33

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 48 - 319 3.8e-47 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 259
AccI GTMKAC 2 cut(s) 342, 944
AccII CGCG 1 cut(s) 147
AciI CCGC 6 cut(s) 74, 145, 305, 324, 430, 701
AclWI GGATC 2 cut(s) 404, 711
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 2 cut(s) 628, 880
AfiI CCNNNNNNNGG 1 cut(s) 868
AflII CTTAAG 1 cut(s) 695
AgsI TTSAA 2 cut(s) 251, 920
AluBI AGCT 6 cut(s) 101, 544, 554, 709, 794, 809
AluI AGCT 6 cut(s) 101, 544, 554, 709, 794, 809
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 2 cut(s) 404, 711
Ama87I CYCGRG 1 cut(s) 714
AoxI GGCC 2 cut(s) 212, 711
ApaI GGGCCC 1 cut(s) 216
ApeKI GCWGC 7 cut(s) 223, 427, 632, 635, 647, 656, 806
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 3 cut(s) 212, 213, 712
AsuC2I CCSGG 2 cut(s) 715, 716
AsuHPI GGTGA 2 cut(s) 3, 63
AsuNHI GCTAGC 1 cut(s) 974
AvaI CYCGRG 1 cut(s) 714
BaeGI GKGCMC 1 cut(s) 216
BanII GRGCYC 1 cut(s) 216
BbvI GCAGC 7 cut(s) 235, 439, 634, 643, 644, 647, 818
BccI CCATC 1 cut(s) 596
BceAI ACGGC 1 cut(s) 549
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BcnI CCSGG 2 cut(s) 715, 716
BcoDI GTCTC 1 cut(s) 445
BfaI CTAG 2 cut(s) 876, 975
BfmI CTRYAG 2 cut(s) 290, 804
BfrI CTTAAG 1 cut(s) 695
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 7 cut(s) 224, 428, 633, 636, 648, 657, 807
BlsI GCNGC 7 cut(s) 225, 429, 634, 637, 649, 658, 808
BmcAI AGTACT 1 cut(s) 880
Bme1390I CCNGG 2 cut(s) 715, 716
BmeT110I CYCGRG 1 cut(s) 714
BmgT120I GGNCC 3 cut(s) 212, 213, 712
BmiI GGNNCC 2 cut(s) 213, 214
BmrFI CCNGG 2 cut(s) 715, 716
BmsI GCATC 3 cut(s) 239, 350, 846
BmtI GCTAGC 1 cut(s) 978
Bpu10I CCTNAGC 1 cut(s) 555
BpuMI CCSGG 2 cut(s) 715, 716
BsaBI GATNNNNATC 1 cut(s) 741
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 714
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 1 cut(s) 868
Bse118I RCCGGY 1 cut(s) 978
Bse3DI GCAATG 1 cut(s) 790
Bse8I GATNNNNATC 1 cut(s) 741
BseDI CCNNGG 1 cut(s) 714
BseGI GGATG 1 cut(s) 907
BseJI GATNNNNATC 1 cut(s) 741
BseLI CCNNNNNNNGG 1 cut(s) 868
BseMI GCAATG 1 cut(s) 790
BseMII CTCAG 2 cut(s) 551, 944
BseRI GAGGAG 2 cut(s) 395, 634
BseSI GKGCMC 1 cut(s) 216
BseXI GCAGC 7 cut(s) 235, 439, 634, 643, 644, 647, 818
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 2 cut(s) 214, 713
BsiHKCI CYCGRG 1 cut(s) 714
BsiSI CCGG 2 cut(s) 715, 979
BslI CCNNNNNNNGG 1 cut(s) 868
BsmAI GTCTC 1 cut(s) 445
BsnI GGCC 2 cut(s) 214, 713
BsoBI CYCGRG 1 cut(s) 714
Bsp120I GGGCCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 6 cut(s) 111, 121, 172, 396, 703, 951
BspACI CCGC 6 cut(s) 74, 145, 305, 324, 430, 701
BspANI GGCC 2 cut(s) 214, 713
BspCNI CTCAG 2 cut(s) 550, 943
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 2 cut(s) 213, 214
BspMAI CTGCAG 2 cut(s) 294, 808
BspMI ACCTGC 1 cut(s) 259
BspOI GCTAGC 1 cut(s) 978
BspPI GGATC 2 cut(s) 404, 711
BspQI GCTCTTC 1 cut(s) 177
BspTI CTTAAG 1 cut(s) 695
BsrDI GCAATG 1 cut(s) 790
BsrFI RCCGGY 1 cut(s) 978
BssAI RCCGGY 1 cut(s) 978
BssECI CCNNGG 1 cut(s) 714
BssMI GATC 6 cut(s) 111, 121, 172, 396, 703, 951
BssNI GRCGYC 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 420, 463
Bst6I CTCTTC 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 695
BstAPI GCANNNNNTGC 2 cut(s) 274, 644
BstC8I GCNNGC 4 cut(s) 197, 228, 711, 976
BstDEI CTNAG 3 cut(s) 537, 555, 930
BstF5I GGATG 1 cut(s) 907
BstFNI CGCG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 6 cut(s) 114, 124, 175, 399, 706, 954
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 6 cut(s) 111, 121, 172, 396, 703, 951
BstMWI GCNNNNNNNGC 7 cut(s) 211, 220, 274, 644, 653, 656, 815
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 713, 714
BstSFI CTRYAG 2 cut(s) 290, 804
BstSLI GKGCMC 1 cut(s) 216
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 7 cut(s) 235, 439, 634, 643, 644, 647, 818
BsuRI GGCC 2 cut(s) 214, 713
BtsCI GGATG 1 cut(s) 907
BtsI GCAGTG 1 cut(s) 969
BtsIMutI CAGTG 3 cut(s) 169, 459, 969
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 4 cut(s) 197, 228, 711, 976
CfoI GCGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 978
Cfr13I GGNCC 3 cut(s) 212, 213, 712
Cfr9I CCCGGG 1 cut(s) 714
CseI GACGC 1 cut(s) 50
Csp6I GTAC 2 cut(s) 627, 879
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviAII CATG 4 cut(s) 196, 313, 596, 671
CviQI GTAC 2 cut(s) 627, 879
DdeI CTNAG 3 cut(s) 537, 555, 930
DpnI GATC 6 cut(s) 113, 123, 174, 398, 705, 953
DpnII GATC 6 cut(s) 111, 121, 172, 396, 703, 951
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
EciI GGCGGA 1 cut(s) 716
Eco24I GRGCYC 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 714
EcoO109I RGGNCCY 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 216
FaeI CATG 4 cut(s) 199, 316, 599, 674
FatI CATG 4 cut(s) 195, 312, 595, 670
FauI CCCGC 2 cut(s) 298, 423
FauNDI CATATG 1 cut(s) 401
FblI GTMKAC 2 cut(s) 342, 944
Fnu4HI GCNGC 7 cut(s) 224, 428, 633, 636, 648, 657, 807
FokI GGATG 1 cut(s) 914
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 7 cut(s) 224, 428, 633, 636, 648, 657, 807
FspBI CTAG 2 cut(s) 876, 975
GlaI GCGC 1 cut(s) 194
GluI GCNGC 7 cut(s) 224, 428, 633, 636, 648, 657, 807
HaeIII GGCC 2 cut(s) 214, 713
HapII CCGG 2 cut(s) 715, 979
HgaI GACGC 1 cut(s) 50
HhaI GCGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 4 cut(s) 199, 316, 599, 674
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HindIII AAGCTT 2 cut(s) 542, 792
HinfI GANTC 5 cut(s) 168, 283, 309, 496, 724
HpaII CCGG 2 cut(s) 715, 979
HphI GGTGA 2 cut(s) 3, 63
Hpy166II GTNNAC 2 cut(s) 343, 945
Hpy188I TCNGA 5 cut(s) 475, 540, 824, 933, 951
Hpy188III TCNNGA 5 cut(s) 125, 234, 251, 450, 917
Hpy8I GTNNAC 2 cut(s) 343, 945
Hpy99I CGWCG 3 cut(s) 66, 152, 155
HpyAV CCTTC 3 cut(s) 122, 257, 475
HpyCH4III ACNGT 2 cut(s) 420, 463
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 5 cut(s) 277, 292, 405, 526, 806
HpyF10VI GCNNNNNNNGC 7 cut(s) 211, 220, 274, 644, 653, 656, 815
HpyF3I CTNAG 3 cut(s) 537, 555, 930
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 4 cut(s) 199, 316, 599, 674
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 6 cut(s) 111, 121, 172, 396, 703, 951
LguI GCTCTTC 1 cut(s) 177
LpnPI CCDG 8 cut(s) 54, 254, 302, 512, 695, 728, 750, 795
Lsp1109I GCAGC 7 cut(s) 235, 439, 634, 643, 644, 647, 818
LweI GCATC 3 cut(s) 239, 350, 846
MaeI CTAG 2 cut(s) 876, 975
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 904
MalI GATC 6 cut(s) 113, 123, 174, 398, 705, 953
MboI GATC 6 cut(s) 111, 121, 172, 396, 703, 951
MboII GAAGA 6 cut(s) 10, 194, 292, 497, 530, 780
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 5 cut(s) 333, 406, 489, 521, 838
MlyI GAGTC 2 cut(s) 177, 733
MmeI TCCRAC 1 cut(s) 802
MseI TTAA 3 cut(s) 546, 585, 696
MslI CAYNNNNRTG 1 cut(s) 600
MspA1I CMGCKG 3 cut(s) 430, 709, 809
MspCI CTTAAG 1 cut(s) 695
MspI CCGG 2 cut(s) 715, 979
MspR9I CCNGG 2 cut(s) 715, 716
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 7 cut(s) 211, 220, 274, 644, 653, 656, 815
NciI CCSGG 2 cut(s) 715, 716
NdeI CATATG 1 cut(s) 401
NdeII GATC 6 cut(s) 111, 121, 172, 396, 703, 951
NheI GCTAGC 1 cut(s) 974
NlaIII CATG 4 cut(s) 199, 316, 599, 674
NlaIV GGNNCC 2 cut(s) 213, 214
NmuCI GTSAC 1 cut(s) 904
NspI RCATGY 1 cut(s) 199
PaeI GCATGC 1 cut(s) 199
PciSI GCTCTTC 1 cut(s) 177
PfeI GAWTC 3 cut(s) 283, 309, 496
PkrI GCNGC 7 cut(s) 225, 429, 634, 637, 649, 658, 808
PleI GAGTC 2 cut(s) 176, 732
PpsI GAGTC 2 cut(s) 176, 732
PspN4I GGNNCC 2 cut(s) 213, 214
PspOMI GGGCCC 1 cut(s) 212
PspPI GGNCC 3 cut(s) 212, 213, 712
PstI CTGCAG 2 cut(s) 294, 808
PvuII CAGCTG 2 cut(s) 709, 809
RsaI GTAC 2 cut(s) 628, 880
RsaNI GTAC 2 cut(s) 627, 879
RseI CAYNNNNRTG 1 cut(s) 600
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 3 cut(s) 546, 585, 696
SatI GCNGC 7 cut(s) 224, 428, 633, 636, 648, 657, 807
Sau3AI GATC 6 cut(s) 111, 121, 172, 396, 703, 951
Sau96I GGNCC 3 cut(s) 212, 213, 712
ScaI AGTACT 1 cut(s) 880
SchI GAGTC 2 cut(s) 177, 733
ScrFI CCNGG 2 cut(s) 715, 716
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 3 cut(s) 239, 350, 846
SfcI CTRYAG 2 cut(s) 290, 804
SmaI CCCGGG 1 cut(s) 716
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
SphI GCATGC 1 cut(s) 199
Sse9I AATT 5 cut(s) 333, 406, 489, 521, 838
SsiI CCGC 6 cut(s) 74, 145, 305, 324, 430, 701
SspMI CTAG 2 cut(s) 876, 975
StyD4I CCNGG 2 cut(s) 713, 714
TaaI ACNGT 2 cut(s) 420, 463
TaiI ACGT 1 cut(s) 153
TaqI TCGA 6 cut(s) 114, 171, 235, 422, 449, 727
TaqII GACCGA 1 cut(s) 148
TasI AATT 5 cut(s) 333, 406, 489, 521, 838
TatI WGTACW 2 cut(s) 626, 878
TfiI GAWTC 3 cut(s) 283, 309, 496
Tru1I TTAA 3 cut(s) 546, 585, 696
Tru9I TTAA 3 cut(s) 546, 585, 696
TscAI CASTG 3 cut(s) 169, 466, 976
TseFI GTSAC 1 cut(s) 904
TseI GCWGC 7 cut(s) 223, 427, 632, 635, 647, 656, 806
Tsp45I GTSAC 1 cut(s) 904
TspDTI ATGAA 3 cut(s) 564, 791, 980
TspMI CCCGGG 1 cut(s) 714
TspRI CASTG 3 cut(s) 169, 466, 976
Vha464I CTTAAG 1 cut(s) 695
XceI RCATGY 1 cut(s) 199
XmaI CCCGGG 1 cut(s) 714
XmiI GTMKAC 2 cut(s) 342, 944
XspI CTAG 2 cut(s) 876, 975
ZraI GACGTC 1 cut(s) 151
ZrmI AGTACT 1 cut(s) 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.