Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002132.1

Orthogroup ID

OG0001612

Physical Location & Seq

Genomic Coordinates Reverse (-)

200546 .. 201553

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002132.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

atgggcttttcaccattcttcccaaaccctctgtttcctcctgtcaaaaaccctaacaagcgtcgtgcttcaccgccaccaactaagaagcaaaaggtagctgatgatgagatcgacacagatcaagaaggcattgagcaactccgcgacgtcgtttctgtcagtggagtcaatcttgtggaagagcaagagcgcatgctgttgctttcggggcccaagaagcagcaagcatctcgaaaacttgtgctgcaagaaaaccaagaagggctggttttgcagaagattcccctgcagaaaaagttggcgggaatcatggggagttgtggtttgagaattagtgttgacaaagatgtggagagatgcttgtcaatgtgtgtggaggagagaatgagggggatcatatgcaatttgattagacagtcgaagcagcgggttgattgcgaaaaatcgagacatcacactgtttctacatctgatgtgaagcaaaaaattatgattctcaacaagaaagctagagaagagttgcaggaaaaggctcagaagcataatgaagctaaggttagcactaacggatttgagggtgtcaaggataaacatgacgatggacatgacaaaatgaggagaaatacagcagcagcaaatgttgctgcccttgctgctcttggaggacatgacatattggcgaaatggcaacttaaggcggatcagctggcccgggagaagagtcgaggtaaagatgtaaatcacaaggctacatcaactgctggaagaacaatgaatggcaatgtagaagcggagaaaaggggcgatgtagaagctttggtgtctgcagctggaagtgctgtcggaaagtttgggaggaattgccaagttatgatgatgcctcaaacaatggtggctagtactcgtagtatatctgtcaaggatgtgattgctgttctggaaaaggagcctcagatgtccaagtctactctgatctatttgctaatgaacactgctagctggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05168 map03022 map05016 map05168

Pfam Domains

Protein Families

RST TAF4

Protein Analysis

335

Amino Acids

37.12

Weight (kDa)

9.5

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02790
rosa_laevigata	RLG00000028661 RLG00000030349 RLG00000030352 RLG00000030356 RLG00000030371 RLG00000030378 RLG00000030380 RLG00000030384 RLG00000030386 RLG00000030388
rosa_multiflora	Rmu_sc0000749.1_g000030 Rmu_sc0000749.1_g000053 Rmu_sc0001932.1_g000014 Rmu_sc0001932.1_g000030 Rmu_sc0002132.1_g000050 Rmu_sc0002263.1_g000033 Rmu_sc0004185.1_g000003
rosa_roxburghii	Rroxscaffold_4G00327000 Rroxscaffold_4G00327020 Rroxscaffold_4G00327130 Rroxscaffold_4G00327210
rosa_rugosa	Rorug01G0035600 Rorug01G0035800 Rorug06G0044400
rosa_samantha	Rh1AG048700 Rh1AG048800 Rh1AG048900 Rh1AG050900 Rh1AG051400 Rh1AG051700 Rh1AG051800 Rh1AG052300 Rh1AG053000 Rh1AG053100 Rh1AG053900 Rh1BG046300 Rh1CG018200 Rh1CG052600 Rh1CG052700 Rh1CG052900 Rh1CG053300 Rh1CG053400 Rh2AG524800
rosa_wichuraiana	Rw1G004420 Rw1G004460 Rw1G004520 Rw1G004600 Rw1G004650 Rw1G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	968
AccII	CGCG	1 cut(s)	147
AciI	CCGC	6 cut(s)	74, 145, 305, 430, 701, 794
AclWI	GGATC	2 cut(s)	404, 711
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	904
AflII	CTTAAG	1 cut(s)	695
AluBI	AGCT	7 cut(s)	101, 512, 554, 709, 818, 833, 1002
AluI	AGCT	7 cut(s)	101, 512, 554, 709, 818, 833, 1002
Alw26I	GTCTC	1 cut(s)	445
AlwI	GGATC	2 cut(s)	404, 711
Ama87I	CYCGRG	1 cut(s)	714
AoxI	GGCC	2 cut(s)	212, 711
ApaI	GGGCCC	1 cut(s)	216
ApeKI	GCWGC	8 cut(s)	223, 247, 427, 632, 635, 647, 656, 830
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	3 cut(s)	212, 213, 712
AsuC2I	CCSGG	2 cut(s)	715, 716
AsuHPI	GGTGA	2 cut(s)	3, 63
AsuNHI	GCTAGC	1 cut(s)	998
AvaI	CYCGRG	1 cut(s)	714
BaeGI	GKGCMC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	216
BbvI	GCAGC	8 cut(s)	234, 235, 439, 634, 643, 644, 647, 842
BccI	CCATC	1 cut(s)	596
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BcnI	CCSGG	2 cut(s)	715, 716
BcoDI	GTCTC	1 cut(s)	445
BfaI	CTAG	3 cut(s)	513, 900, 999
BfmI	CTRYAG	2 cut(s)	290, 828
BfrI	CTTAAG	1 cut(s)	695
BisI	GCNGC	8 cut(s)	224, 248, 428, 633, 636, 648, 657, 831
BlsI	GCNGC	8 cut(s)	225, 249, 429, 634, 637, 649, 658, 832
BmcAI	AGTACT	1 cut(s)	904
Bme1390I	CCNGG	2 cut(s)	715, 716
BmeT110I	CYCGRG	1 cut(s)	714
BmgT120I	GGNCC	3 cut(s)	212, 213, 712
BmiI	GGNNCC	3 cut(s)	213, 214, 951
BmrFI	CCNGG	2 cut(s)	715, 716
BmsI	GCATC	3 cut(s)	239, 350, 870
BmtI	GCTAGC	1 cut(s)	1002
Bpu10I	CCTNAGC	1 cut(s)	555
BpuMI	CCSGG	2 cut(s)	715, 716
BsaBI	GATNNNNATC	1 cut(s)	741
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	714
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bse3DI	GCAATG	1 cut(s)	790
Bse8I	GATNNNNATC	1 cut(s)	741
BseDI	CCNNGG	1 cut(s)	714
BseGI	GGATG	1 cut(s)	931
BseJI	GATNNNNATC	1 cut(s)	741
BseMI	GCAATG	1 cut(s)	790
BseMII	CTCAG	2 cut(s)	551, 968
BseRI	GAGGAG	2 cut(s)	395, 634
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	8 cut(s)	234, 235, 439, 634, 643, 644, 647, 842
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	214, 713
BsiHKCI	CYCGRG	1 cut(s)	714
BsiSI	CCGG	1 cut(s)	715
BsmAI	GTCTC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	214, 713
BsoBI	CYCGRG	1 cut(s)	714
Bsp120I	GGGCCC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	5 cut(s)	111, 121, 396, 703, 975
BspACI	CCGC	6 cut(s)	74, 145, 305, 430, 701, 794
BspANI	GGCC	2 cut(s)	214, 713
BspCNI	CTCAG	2 cut(s)	550, 967
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	3 cut(s)	213, 214, 951
BspMAI	CTGCAG	2 cut(s)	294, 832
BspOI	GCTAGC	1 cut(s)	1002
BspPI	GGATC	2 cut(s)	404, 711
BspQI	GCTCTTC	1 cut(s)	177
BspTI	CTTAAG	1 cut(s)	695
BsrDI	GCAATG	1 cut(s)	790
BssECI	CCNNGG	1 cut(s)	714
BssMI	GATC	5 cut(s)	111, 121, 396, 703, 975
BssNI	GRCGYC	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	420, 463
Bst6I	CTCTTC	3 cut(s)	177, 513, 716
BstACI	GRCGYC	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	695
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	4 cut(s)	197, 228, 711, 1000
BstDEI	CTNAG	4 cut(s)	84, 537, 555, 954
BstF5I	GGATG	1 cut(s)	931
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	5 cut(s)	114, 124, 399, 706, 978
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	5 cut(s)	111, 121, 396, 703, 975
BstMWI	GCNNNNNNNGC	7 cut(s)	211, 220, 274, 644, 653, 656, 839
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	713, 714
BstSFI	CTRYAG	2 cut(s)	290, 828
BstSLI	GKGCMC	1 cut(s)	216
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	8 cut(s)	234, 235, 439, 634, 643, 644, 647, 842
BsuRI	GGCC	2 cut(s)	214, 713
BtgZI	GCGATG	1 cut(s)	822
BtsCI	GGATG	1 cut(s)	931
BtsI	GCAGTG	1 cut(s)	993
BtsIMutI	CAGTG	3 cut(s)	169, 459, 993
Cac8I	GCNNGC	4 cut(s)	197, 228, 711, 1000
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	3 cut(s)	212, 213, 712
Cfr9I	CCCGGG	1 cut(s)	714
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	903
CspCI	CAANNNNNGTGG	2 cut(s)	357, 392
CviAII	CATG	5 cut(s)	196, 313, 596, 608, 671
CviQI	GTAC	1 cut(s)	903
DdeI	CTNAG	4 cut(s)	84, 537, 555, 954
DpnI	GATC	5 cut(s)	113, 123, 398, 705, 977
DpnII	GATC	5 cut(s)	111, 121, 396, 703, 975
Eam1104I	CTCTTC	3 cut(s)	177, 513, 716
EarI	CTCTTC	3 cut(s)	177, 513, 716
EciI	GGCGGA	1 cut(s)	716
Eco24I	GRGCYC	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	714
EcoO109I	RGGNCCY	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	5 cut(s)	199, 316, 599, 611, 674
FatI	CATG	5 cut(s)	195, 312, 595, 607, 670
FauI	CCCGC	2 cut(s)	298, 423
FauNDI	CATATG	1 cut(s)	401
FblI	GTMKAC	1 cut(s)	968
Fnu4HI	GCNGC	8 cut(s)	224, 248, 428, 633, 636, 648, 657, 831
FokI	GGATG	1 cut(s)	938
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	8 cut(s)	224, 248, 428, 633, 636, 648, 657, 831
FspBI	CTAG	3 cut(s)	513, 900, 999
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	8 cut(s)	224, 248, 428, 633, 636, 648, 657, 831
HaeIII	GGCC	2 cut(s)	214, 713
HapII	CCGG	1 cut(s)	715
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	195
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	5 cut(s)	199, 316, 599, 611, 674
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	816
HinfI	GANTC	5 cut(s)	168, 283, 309, 496, 724
HpaII	CCGG	1 cut(s)	715
HphI	GGTGA	2 cut(s)	3, 63
Hpy166II	GTNNAC	2 cut(s)	343, 969
Hpy188I	TCNGA	5 cut(s)	475, 540, 848, 957, 975
Hpy188III	TCNNGA	4 cut(s)	125, 234, 450, 941
Hpy8I	GTNNAC	2 cut(s)	343, 969
Hpy99I	CGWCG	3 cut(s)	66, 152, 155
HpyAV	CCTTC	2 cut(s)	122, 257
HpyCH4III	ACNGT	2 cut(s)	420, 463
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	6 cut(s)	250, 277, 292, 405, 526, 830
HpyF10VI	GCNNNNNNNGC	7 cut(s)	211, 220, 274, 644, 653, 656, 839
HpyF3I	CTNAG	4 cut(s)	84, 537, 555, 954
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	5 cut(s)	199, 316, 599, 611, 674
HspAI	GCGC	1 cut(s)	193
Kzo9I	GATC	5 cut(s)	111, 121, 396, 703, 975
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	949
Lsp1109I	GCAGC	8 cut(s)	234, 235, 439, 634, 643, 644, 647, 842
LweI	GCATC	3 cut(s)	239, 350, 870
MaeI	CTAG	3 cut(s)	513, 900, 999
MaeII	ACGT	1 cut(s)	150
MalI	GATC	5 cut(s)	113, 123, 398, 705, 977
MboI	GATC	5 cut(s)	111, 121, 396, 703, 975
MboII	GAAGA	6 cut(s)	10, 194, 292, 530, 733, 780
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	4 cut(s)	333, 406, 489, 862
MlyI	GAGTC	2 cut(s)	177, 733
MmeI	TCCRAC	1 cut(s)	826
MseI	TTAA	1 cut(s)	696
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	3 cut(s)	430, 709, 833
MspCI	CTTAAG	1 cut(s)	695
MspI	CCGG	1 cut(s)	715
MspR9I	CCNGG	2 cut(s)	715, 716
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	7 cut(s)	211, 220, 274, 644, 653, 656, 839
NciI	CCSGG	2 cut(s)	715, 716
NdeI	CATATG	1 cut(s)	401
NdeII	GATC	5 cut(s)	111, 121, 396, 703, 975
NheI	GCTAGC	1 cut(s)	998
NlaIII	CATG	5 cut(s)	199, 316, 599, 611, 674
NlaIV	GGNNCC	3 cut(s)	213, 214, 951
NspI	RCATGY	1 cut(s)	199
PaeI	GCATGC	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	177
PfeI	GAWTC	3 cut(s)	283, 309, 496
PkrI	GCNGC	8 cut(s)	225, 249, 429, 634, 637, 649, 658, 832
PleI	GAGTC	2 cut(s)	176, 732
PpsI	GAGTC	2 cut(s)	176, 732
PspN4I	GGNNCC	3 cut(s)	213, 214, 951
PspOMI	GGGCCC	1 cut(s)	212
PspPI	GGNCC	3 cut(s)	212, 213, 712
PstI	CTGCAG	2 cut(s)	294, 832
PvuII	CAGCTG	2 cut(s)	709, 833
RsaI	GTAC	1 cut(s)	904
RsaNI	GTAC	1 cut(s)	903
RseI	CAYNNNNRTG	1 cut(s)	600
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	8 cut(s)	224, 248, 428, 633, 636, 648, 657, 831
Sau3AI	GATC	5 cut(s)	111, 121, 396, 703, 975
Sau96I	GGNCC	3 cut(s)	212, 213, 712
ScaI	AGTACT	1 cut(s)	904
SchI	GAGTC	2 cut(s)	177, 733
ScrFI	CCNGG	2 cut(s)	715, 716
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	3 cut(s)	239, 350, 870
SfcI	CTRYAG	2 cut(s)	290, 828
SmaI	CCCGGG	1 cut(s)	716
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
SphI	GCATGC	1 cut(s)	199
Sse9I	AATT	4 cut(s)	333, 406, 489, 862
SsiI	CCGC	6 cut(s)	74, 145, 305, 430, 701, 794
SspMI	CTAG	3 cut(s)	513, 900, 999
StyD4I	CCNGG	2 cut(s)	713, 714
TaaI	ACNGT	2 cut(s)	420, 463
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	5 cut(s)	114, 235, 422, 449, 727
TasI	AATT	4 cut(s)	333, 406, 489, 862
TatI	WGTACW	1 cut(s)	902
TfiI	GAWTC	3 cut(s)	283, 309, 496
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TscAI	CASTG	3 cut(s)	169, 466, 1000
TseI	GCWGC	8 cut(s)	223, 247, 427, 632, 635, 647, 656, 830
TspDTI	ATGAA	3 cut(s)	564, 791, 1004
TspGWI	ACGGA	1 cut(s)	585
TspMI	CCCGGG	1 cut(s)	714
TspRI	CASTG	3 cut(s)	169, 466, 1000
Vha464I	CTTAAG	1 cut(s)	695
XceI	RCATGY	1 cut(s)	199
XmaI	CCCGGG	1 cut(s)	714
XmiI	GTMKAC	1 cut(s)	968
XspI	CTAG	3 cut(s)	513, 900, 999
ZraI	GACGTC	1 cut(s)	151
ZrmI	AGTACT	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.