RLG00000030349

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001612
Physical Location & Seq
Reverse (-)
59906848 .. 59907664
817 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030349

Sequence Viewer

Length: 717 bp
ATGCTGTTGCTTTCGGGGCCCAAGAAGCAGCAAGCATCTCGAAAACTTGTGTTTCAAGAAAACCAAGAAGGGCAGTTTTTGCAGAAGATTCCCCTGCAGAAAAAGTTGGCGGGAGTCATGGGGAGTACGTCCAAGCAGCGGGTTGATTGTGAAAAATCGAGACACCACACTGTTTCTACATCTGATGTGAAGCAAGAAATTATGATTCTCAACAAGAAAGCTAGGGAAGAGTTGCAGGAAAAGGCTCAGAAGCTTAATGAAGCTAAGGTTAGCAATAACAAATTTGAGGGTGTTAAGGATAAACATGACGATGGAGATGACAAAATGAGGAGGAGTACAGCAGCAGCAAATATTGCTGCCCTTGCTGCTCTTGGAGGACATGACATATTGGCAAAATGGCAACTTAGGGAGGATCAGCTGGCCCGGGAGAAGCGTCGAGGTAAAGATGTAAACCACAAGGCTACATCAACTGCTGGAAGAACAATGAATGGCAATGTAGAAGCGGAGAAAAGGGGCGGTGTAGAAGCTTTGGTGTCTACAGCTGGAAGTGCTGTCGGAAAGTTTGGGAGGAATTGCCAAGTTATGATGATGCCTCAAACAAAGGTGGCTACTACTCGTAGTATATCTGTCAAGGATGTGATTGCTGTTCTGGAAAAGGAACCTCAGATGTCCAAGTCTACTCAGATCTATTTGCTAATGAACACTGCTAGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

239

Amino Acids

26.33

Weight (kDa)

9.92

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 43 - 230 1.8e-18 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 702
Acc36I ACCTGC 1 cut(s) 702
AccI GTMKAC 2 cut(s) 536, 677
AciI CCGC 4 cut(s) 110, 139, 503, 516
AclWI GGATC 1 cut(s) 420
AcsI RAATTY 1 cut(s) 281
AfaI GTAC 2 cut(s) 127, 337
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 1 cut(s) 56
AluBI AGCT 6 cut(s) 221, 253, 263, 418, 527, 542
AluI AGCT 6 cut(s) 221, 253, 263, 418, 527, 542
Alw26I GTCTC 1 cut(s) 154
AlwI GGATC 1 cut(s) 420
Ama87I CYCGRG 1 cut(s) 423
AoxI GGCC 2 cut(s) 17, 420
ApaI GGGCCC 1 cut(s) 21
ApeKI GCWGC 6 cut(s) 28, 136, 341, 344, 356, 365
ApoI RAATTY 1 cut(s) 281
AspS9I GGNCC 3 cut(s) 17, 18, 421
AsuC2I CCSGG 2 cut(s) 424, 425
AsuNHI GCTAGC 1 cut(s) 707
AvaI CYCGRG 1 cut(s) 423
BaeGI GKGCMC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 21
BbvI GCAGC 6 cut(s) 40, 148, 343, 352, 353, 356
BccI CCATC 1 cut(s) 305
BcgI CGANNNNNNTGC 2 cut(s) 20, 54
BcnI CCSGG 2 cut(s) 424, 425
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 2 cut(s) 222, 708
BfmI CTRYAG 2 cut(s) 95, 537
BfuAI ACCTGC 1 cut(s) 702
BglII AGATCT 1 cut(s) 684
BisI GCNGC 6 cut(s) 29, 137, 342, 345, 357, 366
BlsI GCNGC 6 cut(s) 30, 138, 343, 346, 358, 367
Bme1390I CCNGG 2 cut(s) 424, 425
BmeT110I CYCGRG 1 cut(s) 423
BmgT120I GGNCC 3 cut(s) 17, 18, 421
BmiI GGNNCC 3 cut(s) 18, 19, 660
BmrFI CCNGG 2 cut(s) 424, 425
BmsI GCATC 2 cut(s) 44, 579
BmtI GCTAGC 1 cut(s) 711
Bpu10I CCTNAGC 1 cut(s) 264
BpuMI CCSGG 2 cut(s) 424, 425
BsaJI CCNNGG 1 cut(s) 423
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 499
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 1 cut(s) 640
BseLI CCNNNNNNNGG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 499
BseMII CTCAG 3 cut(s) 260, 677, 695
BseRI GAGGAG 2 cut(s) 343, 346
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 6 cut(s) 40, 148, 343, 352, 353, 356
BshFI GGCC 2 cut(s) 19, 422
BsiHKCI CYCGRG 1 cut(s) 423
BsiSI CCGG 1 cut(s) 424
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 154
BsnI GGCC 2 cut(s) 19, 422
BsoBI CYCGRG 1 cut(s) 423
Bsp120I GGGCCC 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 2 cut(s) 412, 684
BspACI CCGC 4 cut(s) 110, 139, 503, 516
BspANI GGCC 2 cut(s) 19, 422
BspCNI CTCAG 3 cut(s) 259, 676, 694
BspLI GGNNCC 3 cut(s) 18, 19, 660
BspMAI CTGCAG 1 cut(s) 99
BspMI ACCTGC 1 cut(s) 702
BspOI GCTAGC 1 cut(s) 711
BspPI GGATC 1 cut(s) 420
BsrDI GCAATG 1 cut(s) 499
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 2 cut(s) 412, 684
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 222
BstAPI GCANNNNNTGC 2 cut(s) 79, 353
BstC8I GCNNGC 3 cut(s) 33, 420, 709
BstDEI CTNAG 5 cut(s) 246, 264, 404, 663, 681
BstF5I GGATG 1 cut(s) 640
BstKTI GATC 2 cut(s) 415, 687
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 2 cut(s) 412, 684
BstMWI GCNNNNNNNGC 7 cut(s) 16, 25, 79, 353, 362, 365, 548
BstSCI CCNGG 2 cut(s) 422, 423
BstSFI CTRYAG 2 cut(s) 95, 537
BstSLI GKGCMC 1 cut(s) 21
BstV1I GCAGC 6 cut(s) 40, 148, 343, 352, 353, 356
BstX2I RGATCY 1 cut(s) 684
BstYI RGATCY 1 cut(s) 684
BsuRI GGCC 2 cut(s) 19, 422
BtsCI GGATG 1 cut(s) 640
BtsI GCAGTG 1 cut(s) 702
BtsIMutI CAGTG 2 cut(s) 168, 702
BveI ACCTGC 1 cut(s) 702
Cac8I GCNNGC 3 cut(s) 33, 420, 709
Cfr13I GGNCC 3 cut(s) 17, 18, 421
Cfr9I CCCGGG 1 cut(s) 423
CseI GACGC 1 cut(s) 422
Csp6I GTAC 2 cut(s) 126, 336
CviAII CATG 3 cut(s) 118, 305, 380
CviQI GTAC 2 cut(s) 126, 336
DdeI CTNAG 5 cut(s) 246, 264, 404, 663, 681
DpnI GATC 2 cut(s) 414, 686
DpnII GATC 2 cut(s) 412, 684
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 3 cut(s) 121, 308, 383
FaiI YATR 7 cut(s) 119, 203, 306, 381, 386, 584, 623
FatI CATG 3 cut(s) 117, 304, 379
FauI CCCGC 2 cut(s) 103, 132
FblI GTMKAC 2 cut(s) 536, 677
Fnu4HI GCNGC 6 cut(s) 29, 137, 342, 345, 357, 366
FokI GGATG 1 cut(s) 647
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 6 cut(s) 29, 137, 342, 345, 357, 366
FspBI CTAG 2 cut(s) 222, 708
GluI GCNGC 6 cut(s) 29, 137, 342, 345, 357, 366
HaeIII GGCC 2 cut(s) 19, 422
HapII CCGG 1 cut(s) 424
HgaI GACGC 1 cut(s) 422
Hin1II CATG 3 cut(s) 121, 308, 383
HindIII AAGCTT 2 cut(s) 251, 525
HinfI GANTC 3 cut(s) 88, 114, 205
HpaII CCGG 1 cut(s) 424
Hpy166II GTNNAC 3 cut(s) 451, 537, 678
Hpy188I TCNGA 5 cut(s) 184, 249, 557, 666, 684
Hpy188III TCNNGA 4 cut(s) 39, 56, 159, 650
Hpy8I GTNNAC 3 cut(s) 451, 537, 678
Hpy99I CGWCG 1 cut(s) 438
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 3 cut(s) 82, 97, 235
HpyF10VI GCNNNNNNNGC 7 cut(s) 16, 25, 79, 353, 362, 365, 548
HpyF3I CTNAG 5 cut(s) 246, 264, 404, 663, 681
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 3 cut(s) 121, 308, 383
Kzo9I GATC 2 cut(s) 412, 684
LpnPI CCDG 8 cut(s) 107, 221, 404, 437, 459, 528, 635, 697
Lsp1109I GCAGC 6 cut(s) 40, 148, 343, 352, 353, 356
LweI GCATC 2 cut(s) 44, 579
MaeI CTAG 2 cut(s) 222, 708
MaeII ACGT 1 cut(s) 128
MalI GATC 2 cut(s) 414, 686
MboI GATC 2 cut(s) 412, 684
MboII GAAGA 3 cut(s) 97, 239, 489
MflI RGATCY 1 cut(s) 684
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 3 cut(s) 198, 281, 571
MlyI GAGTC 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 535
MnlI CCTC 9 cut(s) 280, 321, 324, 368, 403, 431, 561, 603, 672
MseI TTAA 2 cut(s) 255, 294
MslI CAYNNNNRTG 1 cut(s) 309
MspA1I CMGCKG 3 cut(s) 139, 418, 542
MspI CCGG 1 cut(s) 424
MspR9I CCNGG 2 cut(s) 424, 425
MwoI GCNNNNNNNGC 7 cut(s) 16, 25, 79, 353, 362, 365, 548
NciI CCSGG 2 cut(s) 424, 425
NdeII GATC 2 cut(s) 412, 684
NheI GCTAGC 1 cut(s) 707
NlaIII CATG 3 cut(s) 121, 308, 383
NlaIV GGNNCC 3 cut(s) 18, 19, 660
PaqCI CACCTGC 1 cut(s) 702
PfeI GAWTC 2 cut(s) 88, 205
PkrI GCNGC 6 cut(s) 30, 138, 343, 346, 358, 367
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PspN4I GGNNCC 3 cut(s) 18, 19, 660
PspOMI GGGCCC 1 cut(s) 17
PspPI GGNCC 3 cut(s) 17, 18, 421
PstI CTGCAG 1 cut(s) 99
PsuI RGATCY 1 cut(s) 684
PvuII CAGCTG 2 cut(s) 418, 542
RsaI GTAC 2 cut(s) 127, 337
RsaNI GTAC 2 cut(s) 126, 336
RseI CAYNNNNRTG 1 cut(s) 309
SaqAI TTAA 2 cut(s) 255, 294
SatI GCNGC 6 cut(s) 29, 137, 342, 345, 357, 366
Sau3AI GATC 2 cut(s) 412, 684
Sau96I GGNCC 3 cut(s) 17, 18, 421
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 2 cut(s) 424, 425
SduI GDGCHC 1 cut(s) 21
SfaNI GCATC 2 cut(s) 44, 579
SfcI CTRYAG 2 cut(s) 95, 537
SmaI CCCGGG 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 309
Sse9I AATT 3 cut(s) 198, 281, 571
SsiI CCGC 4 cut(s) 110, 139, 503, 516
SspI AATATT 1 cut(s) 352
SspMI CTAG 2 cut(s) 222, 708
StyD4I CCNGG 2 cut(s) 422, 423
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 1 cut(s) 131
TaqI TCGA 3 cut(s) 40, 158, 436
TasI AATT 3 cut(s) 198, 281, 571
TatI WGTACW 1 cut(s) 335
TfiI GAWTC 2 cut(s) 88, 205
Tru1I TTAA 2 cut(s) 255, 294
Tru9I TTAA 2 cut(s) 255, 294
TscAI CASTG 2 cut(s) 175, 709
TseI GCWGC 6 cut(s) 28, 136, 341, 344, 356, 365
TspDTI ATGAA 3 cut(s) 273, 500, 713
TspMI CCCGGG 1 cut(s) 423
TspRI CASTG 2 cut(s) 175, 709
XapI RAATTY 1 cut(s) 281
XmaI CCCGGG 1 cut(s) 423
XmiI GTMKAC 2 cut(s) 536, 677
XspI CTAG 2 cut(s) 222, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.