Rh1AG048900

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001612
Physical Location & Seq
Forward (+)
8309238 .. 8309480
243 bp
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UTR
Exon/CDS
Intron
Rh1AG048900.1

Sequence Viewer

Length: 243 bp
ATGGCTACATCAACTGTTGGAAGAACAATAGAAGCGGAGAAAAGGGGCGCTTTGGTGTCTGCAGCTGGGAGTGTTGTTGGAAAGTTTGGGAGGAATTGCCAAGTTATGATGATGCCTCAAACAAAGGTGGCTATTACTCGTAGCATATCAGTCAAGGATGTGATCGCTGTTCTGGAAAAGGAACCCCAGGTGTCCAAGTCTACTCTGTTATATTTGCTAATGAACACTGCAGCTGGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

80

Amino Acids

8.47

Weight (kDa)

9.65

Isoelectric Point (pI)

28.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 38 - 71 1.6e-06 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 200
AciI CCGC 1 cut(s) 35
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 2 cut(s) 65, 233
AluI AGCT 2 cut(s) 65, 233
ApeKI GCWGC 2 cut(s) 62, 230
AspLEI GCGC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 188
BfmI CTRYAG 2 cut(s) 60, 228
BfoI RGCGCY 1 cut(s) 51
BisI GCNGC 2 cut(s) 63, 231
BlsI GCNGC 2 cut(s) 64, 232
Bme1390I CCNGG 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 74
BseYI CCCAGC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 162
BspACI CCGC 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 183
BspMAI CTGCAG 2 cut(s) 64, 232
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 16
BstF5I GGATG 1 cut(s) 163
BstH2I RGCGCY 1 cut(s) 51
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 1 cut(s) 165
BstMBI GATC 1 cut(s) 162
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 186
BstSFI CTRYAG 2 cut(s) 60, 228
BstV1I GCAGC 1 cut(s) 74
BtsCI GGATG 1 cut(s) 163
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
CfoI GCGC 1 cut(s) 50
CviJI RGCY 4 cut(s) 5, 65, 131, 233
CviKI_1 RGCY 4 cut(s) 5, 65, 131, 233
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 186
FaiI YATR 3 cut(s) 107, 146, 211
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FblI GTMKAC 1 cut(s) 200
Fnu4HI GCNGC 2 cut(s) 63, 231
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 2 cut(s) 63, 231
GlaI GCGC 1 cut(s) 49
GluI GCNGC 2 cut(s) 63, 231
GsaI CCCAGC 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 51
HhaI GCGC 1 cut(s) 50
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
Hpy166II GTNNAC 1 cut(s) 201
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 1 cut(s) 201
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 2 cut(s) 62, 230
HspAI GCGC 1 cut(s) 48
Kzo9I GATC 1 cut(s) 162
LpnPI CCDG 5 cut(s) 51, 158, 173, 200, 219
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 1 cut(s) 102
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 1 cut(s) 33
MluCI AATT 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 2 cut(s) 84, 126
MspA1I CMGCKG 2 cut(s) 65, 233
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
NdeII GATC 1 cut(s) 162
NlaIV GGNNCC 1 cut(s) 183
PkrI GCNGC 2 cut(s) 64, 232
Psp6I CCWGG 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 183
PstI CTGCAG 2 cut(s) 64, 232
PvuII CAGCTG 2 cut(s) 65, 233
SatI GCNGC 2 cut(s) 63, 231
Sau3AI GATC 1 cut(s) 162
ScrFI CCNGG 1 cut(s) 188
SetI ASST 4 cut(s) 67, 129, 192, 235
SfaNI GCATC 1 cut(s) 102
SfcI CTRYAG 2 cut(s) 60, 228
SgeI CNNG 8 cut(s) 78, 113, 150, 166, 185, 199, 200, 208
Sse9I AATT 1 cut(s) 94
SsiI CCGC 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 16
TasI AATT 1 cut(s) 94
TscAI CASTG 1 cut(s) 232
TseI GCWGC 2 cut(s) 62, 230
TspDTI ATGAA 1 cut(s) 236
TspRI CASTG 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.