Rh1CG018200

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001612
Physical Location & Seq
Forward (+)
3010897 .. 3011187
291 bp
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UTR
Exon/CDS
Intron
Rh1CG018200.1

Sequence Viewer

Length: 291 bp
ATGAGGAGAAGTACAGCAGCTGCAAATGTTGCTGCCCTTGCTGCTCTTGGAGGACATGACATATTGGCGAAATGGAAACTTAAGGTGGATCAGCTATCCCAGGAGAAGCGAATAGGTAAAGATGTAAACCCCCAGGCATGTACAACTATTGGAAGAACAATGAATGGCAATGTACGTAGAAGTGGAGAAAAGGGGTGGTGTAGAAGCTTTGGTGTCTACGGCTGGGAGTGCTGTTGGAAAATATGGGAGGAATGCCCAAGTTATGATGATGCTTCAAACAAAGGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

96

Amino Acids

10.61

Weight (kDa)

9.12

Isoelectric Point (pI)

70.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 216
AclWI GGATC 1 cut(s) 96
AfaI GTAC 3 cut(s) 13, 142, 174
AflII CTTAAG 1 cut(s) 80
AgsI TTSAA 1 cut(s) 276
AjnI CCWGG 2 cut(s) 99, 132
AluBI AGCT 3 cut(s) 20, 94, 207
AluI AGCT 3 cut(s) 20, 94, 207
AlwI GGATC 1 cut(s) 96
AlwNI CAGNNNCTG 1 cut(s) 20
ApeKI GCWGC 4 cut(s) 17, 20, 32, 41
BbvI GCAGC 4 cut(s) 7, 19, 28, 29
BceAI ACGGC 1 cut(s) 235
BciT130I CCWGG 2 cut(s) 101, 134
BfaI CTAG 1 cut(s) 289
BfrI CTTAAG 1 cut(s) 80
BisI GCNGC 4 cut(s) 18, 21, 33, 42
BlsI GCNGC 4 cut(s) 19, 22, 34, 43
Bme1390I CCNGG 2 cut(s) 101, 134
BmrFI CCNGG 2 cut(s) 101, 134
BmsI GCATC 1 cut(s) 259
BsaAI YACGTR 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 99, 132
Bse3DI GCAATG 1 cut(s) 175
BseBI CCWGG 2 cut(s) 101, 134
BseDI CCNNGG 2 cut(s) 99, 132
BseMI GCAATG 1 cut(s) 175
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 4 cut(s) 7, 19, 28, 29
BseYI CCCAGC 1 cut(s) 222
BsmI GAATGC 1 cut(s) 257
Bsp1407I TGTACA 1 cut(s) 140
Bsp143I GATC 1 cut(s) 88
BspPI GGATC 1 cut(s) 96
BspTI CTTAAG 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 175
BsrGI TGTACA 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 99, 132
BssMI GATC 1 cut(s) 88
Bst2UI CCWGG 2 cut(s) 101, 134
BstAFI CTTAAG 1 cut(s) 80
BstAPI GCANNNNNTGC 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 176
BstKTI GATC 1 cut(s) 91
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 4 cut(s) 29, 38, 41, 228
BstNI CCWGG 2 cut(s) 101, 134
BstNSI RCATGY 1 cut(s) 141
BstSCI CCNGG 2 cut(s) 99, 132
BstSNI TACGTA 1 cut(s) 176
BstV1I GCAGC 4 cut(s) 7, 19, 28, 29
CaiI CAGNNNCTG 1 cut(s) 20
Csp6I GTAC 3 cut(s) 12, 141, 173
CviAII CATG 2 cut(s) 56, 138
CviJI RGCY 5 cut(s) 20, 94, 207, 222, 288
CviKI_1 RGCY 5 cut(s) 20, 94, 207, 222, 288
CviQI GTAC 3 cut(s) 12, 141, 173
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eco105I TACGTA 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 99, 132
FaeI CATG 2 cut(s) 59, 141
FaiI YATR 5 cut(s) 57, 62, 139, 244, 264
FatI CATG 2 cut(s) 55, 137
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 4 cut(s) 18, 21, 33, 42
Fsp4HI GCNGC 4 cut(s) 18, 21, 33, 42
FspBI CTAG 1 cut(s) 289
GluI GCNGC 4 cut(s) 18, 21, 33, 42
GsaI CCCAGC 1 cut(s) 226
Hin1II CATG 2 cut(s) 59, 141
HindIII AAGCTT 1 cut(s) 205
Hpy166II GTNNAC 2 cut(s) 127, 217
Hpy8I GTNNAC 2 cut(s) 127, 217
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 38, 41, 228
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 2 cut(s) 59, 141
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 5 cut(s) 86, 113, 119, 146, 208
Lsp1109I GCAGC 4 cut(s) 7, 19, 28, 29
LweI GCATC 1 cut(s) 259
MaeI CTAG 1 cut(s) 289
MaeII ACGT 1 cut(s) 175
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 2 cut(s) 44, 241
MseI TTAA 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 20
MspCI CTTAAG 1 cut(s) 80
MspR9I CCNGG 2 cut(s) 101, 134
Mva1269I GAATGC 1 cut(s) 257
MvaI CCWGG 2 cut(s) 101, 134
MwoI GCNNNNNNNGC 4 cut(s) 29, 38, 41, 228
NdeII GATC 1 cut(s) 88
NlaIII CATG 2 cut(s) 59, 141
NspI RCATGY 1 cut(s) 141
PctI GAATGC 1 cut(s) 257
PkrI GCNGC 4 cut(s) 19, 22, 34, 43
Ppu21I YACGTR 1 cut(s) 176
Psp6I CCWGG 2 cut(s) 99, 132
PspFI CCCAGC 1 cut(s) 222
PspGI CCWGG 2 cut(s) 99, 132
PstNI CAGNNNCTG 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 3 cut(s) 13, 142, 174
RsaNI GTAC 3 cut(s) 12, 141, 173
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 4 cut(s) 18, 21, 33, 42
Sau3AI GATC 1 cut(s) 88
ScrFI CCNGG 2 cut(s) 101, 134
SetI ASST 7 cut(s) 22, 87, 96, 118, 178, 209, 286
SfaNI GCATC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SnaBI TACGTA 1 cut(s) 176
SspMI CTAG 1 cut(s) 289
StyD4I CCNGG 2 cut(s) 99, 132
TaiI ACGT 1 cut(s) 178
TatI WGTACW 2 cut(s) 11, 140
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseI GCWGC 4 cut(s) 17, 20, 32, 41
TspDTI ATGAA 1 cut(s) 176
Vha464I CTTAAG 1 cut(s) 80
XceI RCATGY 1 cut(s) 141
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.