Rh1CG052900

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001612
Physical Location & Seq
Forward (+)
9780236 .. 9781054
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG052900.1

Sequence Viewer

Length: 819 bp
ATGCTGTTGCTTTCGGTGCCCAAGAAACGGCAAGCATCTGGAAAACTTGTGCTTCAAGAAAACCAAGAAGGGCTGGTTTTGCAGAAGATTCCCTTGCAGAAAAAGTTGGCGGGAATCATGGGGAGGTGTGGTTTGAGAATTGGTGTTGACAAAGATGTGGAGAGATGCTTGTCAATGTGTGTGGAGGAGAGAATGAGGAGGATCATATGCAATTTGATTAGACAGTCGAAGCAGCGGGTTGATTACGAAAAATCGAGACACCACACTGTTTCTACATCAGATGTGAAGCAAGAAATTATGATTCTCAACAAGAAAGCTGGGGAAGAGTTGCTGGAAAAGGCTCAGAAGCTTAATGAAGCTAAGGTTAGCACTAACGGATTTGAGGGTGTTAATTATAAGGACAAACATGACGATGGGCACGACAAAATGAGGAGAAGTACAGCAGCAGCAAATGTTGCTGCCCTTGCTGCTCTTGGAGGACATGACATATTGGCGAAATGGCAACTTAAGGCGGATCAGCTGGCCCGAGAGAAGCGTCGAGGTAAAGATGTAAACCACAAGGCTACATCAACTGCTGGAAGAACAATGAATGGCAATGTAGAAGCGGAGAAAAGGGGCGGTGTAGAAGCTTTGGTGTCTGCAGCTGGGAGTGTTGTTGGAAAATTTGGGAGGAATTGCCAAGTTATGATGATGCCTCAAACAAAGGTAGCTGGTACTCGTAGCATATCTGTCAAGGATGTGATTGCTGTTCTCGTAAAAGAACCTCAGATGTCCAAGTCTACTCTGATCTATTTACGAATGAACACTGCTAGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

272

Amino Acids

30.09

Weight (kDa)

9.96

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 14 - 264 1.1e-37 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AccB1I GGYRCC 1 cut(s) 16
AccI GTMKAC 1 cut(s) 779
AciI CCGC 5 cut(s) 110, 235, 512, 605, 618
AclWI GGATC 2 cut(s) 209, 522
AcsI RAATTY 1 cut(s) 662
AfaI GTAC 2 cut(s) 439, 715
AfiI CCNNNNNNNGG 1 cut(s) 27
AflII CTTAAG 1 cut(s) 506
AgsI TTSAA 1 cut(s) 56
AluBI AGCT 7 cut(s) 317, 349, 359, 520, 629, 644, 710
AluI AGCT 7 cut(s) 317, 349, 359, 520, 629, 644, 710
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 2 cut(s) 209, 522
Ama87I CYCGRG 1 cut(s) 525
AoxI GGCC 1 cut(s) 522
ApeKI GCWGC 6 cut(s) 232, 443, 446, 458, 467, 641
ApoI RAATTY 1 cut(s) 662
AspS9I GGNCC 1 cut(s) 523
AsuNHI GCTAGC 1 cut(s) 809
AvaI CYCGRG 1 cut(s) 525
BaeGI GKGCMC 2 cut(s) 21, 420
BanI GGYRCC 1 cut(s) 16
BbvI GCAGC 6 cut(s) 244, 445, 454, 455, 458, 653
BccI CCATC 1 cut(s) 407
BceAI ACGGC 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 250
BfaI CTAG 1 cut(s) 810
BfmI CTRYAG 1 cut(s) 639
BfrI CTTAAG 1 cut(s) 506
BisI GCNGC 6 cut(s) 233, 444, 447, 459, 468, 642
BlsI GCNGC 6 cut(s) 234, 445, 448, 460, 469, 643
BmeT110I CYCGRG 1 cut(s) 525
BmgT120I GGNCC 1 cut(s) 523
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 3 cut(s) 44, 155, 681
BmtI GCTAGC 1 cut(s) 813
Bpu10I CCTNAGC 1 cut(s) 360
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse118I RCCGGY 1 cut(s) 813
Bse3DI GCAATG 1 cut(s) 601
BseGI GGATG 1 cut(s) 742
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMI GCAATG 1 cut(s) 601
BseMII CTCAG 2 cut(s) 356, 779
BseRI GAGGAG 3 cut(s) 200, 211, 445
BseSI GKGCMC 2 cut(s) 21, 420
BseXI GCAGC 6 cut(s) 244, 445, 454, 455, 458, 653
BseYI CCCAGC 2 cut(s) 317, 644
BshFI GGCC 1 cut(s) 524
BshNI GGYRCC 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 525
BsiSI CCGG 1 cut(s) 814
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 250
BsnI GGCC 1 cut(s) 524
BsoBI CYCGRG 1 cut(s) 525
Bsp1286I GDGCHC 2 cut(s) 21, 420
Bsp143I GATC 3 cut(s) 201, 514, 786
BspACI CCGC 5 cut(s) 110, 235, 512, 605, 618
BspANI GGCC 1 cut(s) 524
BspCNI CTCAG 2 cut(s) 355, 778
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 643
BspOI GCTAGC 1 cut(s) 813
BspPI GGATC 2 cut(s) 209, 522
BspT107I GGYRCC 1 cut(s) 16
BspTI CTTAAG 1 cut(s) 506
BsrDI GCAATG 1 cut(s) 601
BsrFI RCCGGY 1 cut(s) 813
BssAI RCCGGY 1 cut(s) 813
BssMI GATC 3 cut(s) 201, 514, 786
Bst4CI ACNGT 2 cut(s) 225, 268
Bst6I CTCTTC 1 cut(s) 318
BstAFI CTTAAG 1 cut(s) 506
BstAPI GCANNNNNTGC 1 cut(s) 455
BstC8I GCNNGC 3 cut(s) 33, 522, 811
BstDEI CTNAG 3 cut(s) 342, 360, 765
BstF5I GGATG 1 cut(s) 742
BstKTI GATC 3 cut(s) 204, 517, 789
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 3 cut(s) 201, 514, 786
BstMWI GCNNNNNNNGC 5 cut(s) 16, 79, 455, 464, 467
BstSFI CTRYAG 1 cut(s) 639
BstSLI GKGCMC 2 cut(s) 21, 420
BstV1I GCAGC 6 cut(s) 244, 445, 454, 455, 458, 653
BsuRI GGCC 1 cut(s) 524
BtsCI GGATG 1 cut(s) 742
BtsI GCAGTG 1 cut(s) 804
BtsIMutI CAGTG 2 cut(s) 264, 804
Cac8I GCNNGC 3 cut(s) 33, 522, 811
Cfr10I RCCGGY 1 cut(s) 813
Cfr13I GGNCC 1 cut(s) 523
CseI GACGC 1 cut(s) 524
Csp6I GTAC 2 cut(s) 438, 714
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviAII CATG 3 cut(s) 118, 407, 482
CviQI GTAC 2 cut(s) 438, 714
DdeI CTNAG 3 cut(s) 342, 360, 765
DpnI GATC 3 cut(s) 203, 516, 788
DpnII GATC 3 cut(s) 201, 514, 786
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
EciI GGCGGA 1 cut(s) 527
Eco88I CYCGRG 1 cut(s) 525
FaeI CATG 3 cut(s) 121, 410, 485
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FatI CATG 3 cut(s) 117, 406, 481
FauI CCCGC 2 cut(s) 103, 228
FauNDI CATATG 1 cut(s) 206
FblI GTMKAC 1 cut(s) 779
Fnu4HI GCNGC 6 cut(s) 233, 444, 447, 459, 468, 642
FokI GGATG 1 cut(s) 749
Fsp4HI GCNGC 6 cut(s) 233, 444, 447, 459, 468, 642
FspBI CTAG 1 cut(s) 810
GluI GCNGC 6 cut(s) 233, 444, 447, 459, 468, 642
GsaI CCCAGC 2 cut(s) 321, 648
HaeIII GGCC 1 cut(s) 524
HapII CCGG 1 cut(s) 814
HgaI GACGC 1 cut(s) 524
Hin1II CATG 3 cut(s) 121, 410, 485
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HindIII AAGCTT 2 cut(s) 347, 627
HinfI GANTC 3 cut(s) 88, 114, 301
HpaII CCGG 1 cut(s) 814
Hpy166II GTNNAC 3 cut(s) 148, 553, 780
Hpy188I TCNGA 4 cut(s) 280, 345, 768, 786
Hpy188III TCNNGA 3 cut(s) 39, 56, 255
Hpy8I GTNNAC 3 cut(s) 148, 553, 780
Hpy99I CGWCG 1 cut(s) 540
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 2 cut(s) 225, 268
HpyCH4V TGCA 4 cut(s) 82, 97, 210, 641
HpyF10VI GCNNNNNNNGC 5 cut(s) 16, 79, 455, 464, 467
HpyF3I CTNAG 3 cut(s) 342, 360, 765
Hsp92II CATG 3 cut(s) 121, 410, 485
Kzo9I GATC 3 cut(s) 201, 514, 786
LpnPI CCDG 8 cut(s) 24, 59, 303, 317, 506, 561, 630, 696
Lsp1109I GCAGC 6 cut(s) 244, 445, 454, 455, 458, 653
LweI GCATC 3 cut(s) 44, 155, 681
MaeI CTAG 1 cut(s) 810
MalI GATC 3 cut(s) 203, 516, 788
MboI GATC 3 cut(s) 201, 514, 786
MboII GAAGA 3 cut(s) 97, 335, 591
MhlI GDGCHC 2 cut(s) 21, 420
MluCI AATT 6 cut(s) 138, 211, 294, 391, 662, 673
MmeI TCCRAC 1 cut(s) 637
MseI TTAA 3 cut(s) 351, 390, 507
MslI CAYNNNNRTG 1 cut(s) 411
MspA1I CMGCKG 3 cut(s) 235, 520, 644
MspCI CTTAAG 1 cut(s) 506
MspI CCGG 1 cut(s) 814
MwoI GCNNNNNNNGC 5 cut(s) 16, 79, 455, 464, 467
NdeI CATATG 1 cut(s) 206
NdeII GATC 3 cut(s) 201, 514, 786
NheI GCTAGC 1 cut(s) 809
NlaIII CATG 3 cut(s) 121, 410, 485
NlaIV GGNNCC 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 417
PfeI GAWTC 3 cut(s) 88, 114, 301
PkrI GCNGC 6 cut(s) 234, 445, 448, 460, 469, 643
PsiI TTATAA 1 cut(s) 396
PspFI CCCAGC 2 cut(s) 317, 644
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 523
PstI CTGCAG 1 cut(s) 643
PvuII CAGCTG 2 cut(s) 520, 644
RsaI GTAC 2 cut(s) 439, 715
RsaNI GTAC 2 cut(s) 438, 714
RseI CAYNNNNRTG 1 cut(s) 411
SaqAI TTAA 3 cut(s) 351, 390, 507
SatI GCNGC 6 cut(s) 233, 444, 447, 459, 468, 642
Sau3AI GATC 3 cut(s) 201, 514, 786
Sau96I GGNCC 1 cut(s) 523
SduI GDGCHC 2 cut(s) 21, 420
SfaNI GCATC 3 cut(s) 44, 155, 681
SfcI CTRYAG 1 cut(s) 639
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 6 cut(s) 138, 211, 294, 391, 662, 673
SsiI CCGC 5 cut(s) 110, 235, 512, 605, 618
SspMI CTAG 1 cut(s) 810
TaaI ACNGT 2 cut(s) 225, 268
TaqI TCGA 3 cut(s) 227, 254, 538
TasI AATT 6 cut(s) 138, 211, 294, 391, 662, 673
TatI WGTACW 1 cut(s) 437
TfiI GAWTC 3 cut(s) 88, 114, 301
Tru1I TTAA 3 cut(s) 351, 390, 507
Tru9I TTAA 3 cut(s) 351, 390, 507
TscAI CASTG 2 cut(s) 271, 811
TseI GCWGC 6 cut(s) 232, 443, 446, 458, 467, 641
TspDTI ATGAA 3 cut(s) 369, 602, 815
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 2 cut(s) 271, 811
Vha464I CTTAAG 1 cut(s) 506
XapI RAATTY 1 cut(s) 662
XmiI GTMKAC 1 cut(s) 779
XspI CTAG 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.