Rh1CG053300

Transcription initiation factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001612
Physical Location & Seq
Forward (+)
9845706 .. 9851005
5300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG053300.1

Sequence Viewer

Length: 636 bp
ATGATTCCACTTAACTCGAGCCTCAAGAAACCAAATTTCCTATTGAAATCTTGGGCAGTCTTCATCAATGGGTTTTCACCATTCCTCCCAAACCCTCTATTTCCTCCTGTCAAAAACCCTAACAAGCGTCGTGCTTCACCGCCACCAAGTAAGAAGCAAAAGGTAGCTGATGATGAGATCGACACAGATCAAGAAGGCATTAAGAAACTCCGCGACGTCGTTTCGGTCAGTGGAGTCAATCTTGTGGAAGAGCAAGAGCGCATGCTGTTGCTTTCGGGGCCCAAGAAGCAGCAAGCATCTCGAAACCTTGTGCTTCAAGAAAACCAAGAAGGGCTGGTTTTGCAAAAGATTCCCTTGCAGAAAAAGTTGGCCGGAATCATGGGGAGGTGTGGTTTGAGAATTGATGTAGACAAAGATGTGGAGAGATGCTTGTCAATGTTTGTGGAGGAGAGAATGAGGGGGATCATATGCAATTTGATTAGACAGTCGAAGCAGCGGGTTGATTGCGAAAAATTGAGACATCTCACTGTTTCTACATCTGATGTGAAGCAAAAAATTATGATTCTCAACAAGAAAGCTAGGGAAGAGTTGCAGGAAACGGCTCAGAAGCATAATGAAGCTAACATTAGCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05168 map03022 map05016 map05168
Pfam Domains
Protein Families
RST TAF4

Protein Analysis

211

Amino Acids

23.99

Weight (kDa)

9.69

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 70 - 202 6.3e-31 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 219
AccI GTMKAC 1 cut(s) 408
AccII CGCG 1 cut(s) 213
AciI CCGC 3 cut(s) 140, 211, 496
AclWI GGATC 1 cut(s) 470
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 34
AcyI GRCGYC 1 cut(s) 216
AgsI TTSAA 2 cut(s) 46, 317
AluBI AGCT 3 cut(s) 167, 578, 620
AluI AGCT 3 cut(s) 167, 578, 620
Alw26I GTCTC 1 cut(s) 511
AlwI GGATC 1 cut(s) 470
Ama87I CYCGRG 1 cut(s) 16
AoxI GGCC 2 cut(s) 278, 369
ApaI GGGCCC 1 cut(s) 282
ApeKI GCWGC 2 cut(s) 289, 493
ApoI RAATTY 1 cut(s) 34
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 2 cut(s) 278, 279
AsuHPI GGTGA 2 cut(s) 69, 129
AvaI CYCGRG 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 282
BanII GRGCYC 1 cut(s) 282
BbsI GAAGAC 1 cut(s) 52
BbvI GCAGC 2 cut(s) 301, 505
BceAI ACGGC 1 cut(s) 615
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BcoDI GTCTC 1 cut(s) 511
BfaI CTAG 1 cut(s) 579
BisI GCNGC 2 cut(s) 290, 494
BlsI GCNGC 2 cut(s) 291, 495
BmeT110I CYCGRG 1 cut(s) 16
BmgT120I GGNCC 2 cut(s) 278, 279
BmiI GGNNCC 2 cut(s) 279, 280
BmsI GCATC 2 cut(s) 305, 416
BpiI GAAGAC 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 216
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 376, 406
BseMII CTCAG 1 cut(s) 617
BseRI GAGGAG 1 cut(s) 461
BseSI GKGCMC 1 cut(s) 282
BseXI GCAGC 2 cut(s) 301, 505
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 2 cut(s) 280, 371
BsiHKCI CYCGRG 1 cut(s) 16
BsiSI CCGG 1 cut(s) 372
BsmAI GTCTC 1 cut(s) 511
BsnI GGCC 2 cut(s) 280, 371
BsoBI CYCGRG 1 cut(s) 16
Bsp120I GGGCCC 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 282
Bsp143I GATC 3 cut(s) 177, 187, 462
BspACI CCGC 3 cut(s) 140, 211, 496
BspANI GGCC 2 cut(s) 280, 371
BspCNI CTCAG 1 cut(s) 616
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 279, 280
BspPI GGATC 1 cut(s) 470
BspQI GCTCTTC 1 cut(s) 243
BssMI GATC 3 cut(s) 177, 187, 462
BssNI GRCGYC 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 486, 529
Bst6I CTCTTC 2 cut(s) 243, 579
BstACI GRCGYC 1 cut(s) 216
BstC8I GCNNGC 2 cut(s) 263, 294
BstDEI CTNAG 2 cut(s) 603, 633
BstFNI CGCG 1 cut(s) 213
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 3 cut(s) 180, 190, 465
BstMAI GTCTC 1 cut(s) 511
BstMBI GATC 3 cut(s) 177, 187, 462
BstMWI GCNNNNNNNGC 3 cut(s) 277, 286, 340
BstNSI RCATGY 1 cut(s) 265
BstSLI GKGCMC 1 cut(s) 282
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 301, 505
BstV2I GAAGAC 1 cut(s) 52
BsuRI GGCC 2 cut(s) 280, 371
BtsIMutI CAGTG 2 cut(s) 235, 525
Cac8I GCNNGC 2 cut(s) 263, 294
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 2 cut(s) 278, 279
CseI GACGC 1 cut(s) 116
CspCI CAANNNNNGTGG 2 cut(s) 423, 458
CviAII CATG 2 cut(s) 262, 379
CviJI RGCY 8 cut(s) 21, 167, 280, 334, 371, 578, 602, 620
CviKI_1 RGCY 8 cut(s) 21, 167, 280, 334, 371, 578, 602, 620
DdeI CTNAG 2 cut(s) 603, 633
DpnI GATC 3 cut(s) 179, 189, 464
DpnII GATC 3 cut(s) 177, 187, 462
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 2 cut(s) 243, 579
EarI CTCTTC 2 cut(s) 243, 579
Eco24I GRGCYC 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 16
EcoO109I RGGNCCY 1 cut(s) 278
EcoT38I GRGCYC 1 cut(s) 282
FaeI CATG 2 cut(s) 265, 382
FaiI YATR 6 cut(s) 263, 380, 467, 469, 560, 612
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FatI CATG 2 cut(s) 261, 378
FauI CCCGC 1 cut(s) 489
FauNDI CATATG 1 cut(s) 467
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 2 cut(s) 290, 494
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 2 cut(s) 290, 494
FspBI CTAG 1 cut(s) 579
GlaI GCGC 1 cut(s) 260
GluI GCNGC 2 cut(s) 290, 494
HaeIII GGCC 2 cut(s) 280, 371
HapII CCGG 1 cut(s) 372
HgaI GACGC 1 cut(s) 116
HhaI GCGC 1 cut(s) 261
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 2 cut(s) 265, 382
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HinfI GANTC 5 cut(s) 4, 234, 349, 375, 562
HpaII CCGG 1 cut(s) 372
HphI GGTGA 2 cut(s) 69, 129
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 2 cut(s) 541, 606
Hpy188III TCNNGA 4 cut(s) 25, 191, 300, 317
Hpy8I GTNNAC 1 cut(s) 409
Hpy99I CGWCG 3 cut(s) 132, 218, 221
HpyAV CCTTC 2 cut(s) 188, 323
HpyCH4III ACNGT 2 cut(s) 486, 529
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 4 cut(s) 343, 358, 471, 592
HpyF10VI GCNNNNNNNGC 3 cut(s) 277, 286, 340
HpyF3I CTNAG 2 cut(s) 603, 633
HpySE526I ACGT 1 cut(s) 216
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 2 cut(s) 265, 382
HspAI GCGC 1 cut(s) 259
Kzo9I GATC 3 cut(s) 177, 187, 462
LguI GCTCTTC 1 cut(s) 243
LpnPI CCDG 4 cut(s) 120, 320, 385, 578
Lsp1109I GCAGC 2 cut(s) 301, 505
LweI GCATC 2 cut(s) 305, 416
MaeI CTAG 1 cut(s) 579
MaeII ACGT 1 cut(s) 216
MalI GATC 3 cut(s) 179, 189, 464
MboI GATC 3 cut(s) 177, 187, 462
MboII GAAGA 3 cut(s) 52, 260, 596
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 5 cut(s) 34, 399, 472, 512, 555
MlyI GAGTC 1 cut(s) 243
MnlI CCTC 7 cut(s) 32, 95, 105, 114, 378, 439, 450
MseI TTAA 2 cut(s) 12, 201
MspA1I CMGCKG 1 cut(s) 496
MspI CCGG 1 cut(s) 372
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 3 cut(s) 277, 286, 340
NdeI CATATG 1 cut(s) 467
NdeII GATC 3 cut(s) 177, 187, 462
NlaIII CATG 2 cut(s) 265, 382
NlaIV GGNNCC 2 cut(s) 279, 280
NspI RCATGY 1 cut(s) 265
PaeI GCATGC 1 cut(s) 265
PaeR7I CTCGAG 1 cut(s) 16
PciSI GCTCTTC 1 cut(s) 243
PfeI GAWTC 4 cut(s) 4, 349, 375, 562
PkrI GCNGC 2 cut(s) 291, 495
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PspN4I GGNNCC 2 cut(s) 279, 280
PspOMI GGGCCC 1 cut(s) 278
PspPI GGNCC 2 cut(s) 278, 279
PspXI VCTCGAGB 1 cut(s) 16
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 12, 201
SatI GCNGC 2 cut(s) 290, 494
Sau3AI GATC 3 cut(s) 177, 187, 462
Sau96I GGNCC 2 cut(s) 278, 279
SchI GAGTC 1 cut(s) 243
SduI GDGCHC 1 cut(s) 282
SetI ASST 7 cut(s) 165, 169, 219, 309, 389, 580, 622
SfaNI GCATC 2 cut(s) 305, 416
Sfr274I CTCGAG 1 cut(s) 16
SlaI CTCGAG 1 cut(s) 16
SmlI CTYRAG 2 cut(s) 16, 23
SmoI CTYRAG 2 cut(s) 16, 23
SphI GCATGC 1 cut(s) 265
Sse9I AATT 5 cut(s) 34, 399, 472, 512, 555
SsiI CCGC 3 cut(s) 140, 211, 496
SspMI CTAG 1 cut(s) 579
TaaI ACNGT 2 cut(s) 486, 529
TaiI ACGT 1 cut(s) 219
TaqI TCGA 4 cut(s) 17, 180, 301, 488
TaqII GACCGA 1 cut(s) 214
TasI AATT 5 cut(s) 34, 399, 472, 512, 555
TfiI GAWTC 4 cut(s) 4, 349, 375, 562
Tru1I TTAA 2 cut(s) 12, 201
Tru9I TTAA 2 cut(s) 12, 201
TscAI CASTG 2 cut(s) 235, 532
TseI GCWGC 2 cut(s) 289, 493
TspDTI ATGAA 2 cut(s) 52, 630
TspRI CASTG 2 cut(s) 235, 532
XapI RAATTY 1 cut(s) 34
XceI RCATGY 1 cut(s) 265
XhoI CTCGAG 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 408
XspI CTAG 1 cut(s) 579
ZraI GACGTC 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.