Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001932.1

Orthogroup ID

OG0001612

Physical Location & Seq

Genomic Coordinates Reverse (-)

59670 .. 60668

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001932.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atggggttttcaccattcttcccaaaccctctgtttcctcctgtcaaaaaccctaacaagcgtagtgcttctccaccaccaagtaagaagcaaaaggtagctgatgatgagatagacacagatcaagaaggcattgagcaactccgcgacatcgtttctgtcagtggagtcaatcttgtggaagagcaagagcgcatgctgttgctttcggggcccaagaagcagcaagcatctcgaaaacttgtgcttcaagaaaaccaagaagggctggttttgcagaagattcccctgcagaaaaagttggcggcaatcatgggcaggtgtggtttgagagttggtatagataaagatgtggagagatgcttgtcaatgtgtgtggaggagagactgagggggatcatatttaatttgattagacagtcgaagcagcgggttgattgtgaaaaatcgagacatcacactgtttctacatctgatgtgaagcaagaaattatgattctcaacaagaaagctagggaaaagttgcaggaaaaggctcagaagcttaatgaagctaaggttagcaataacggatttgagggtgttgaggataaacatgacgatgaagatgacaaaatgaggagaagtacagcagcagcaaatgttgctgcccttgctgcacttggaggacatgacatattggcgaaatggaaacttaaggcggatcagctatcccgggagaagcgtcgaggtaaagatgtaaaccccaaggcttcatcaactgttggaagaacaatagaagcggagaaaaggggcggtgtagaagctatggtgtctgccgctgggagtgctgttggaaagtttgggaggaattgccaagttatgatgatgcctcaaacaaaggtggctagtactcgtagtatatctgtcaaggatgtgattgctgttctggaaaaggaacctcagacgtccaagtctattttgatatatttgctaatgaacactgcagccggtgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001650 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005730 GO:0005911 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0030054 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0051059 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901796 GO:1902494 GO:1902531 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05168 map03022 map05016 map05168

Pfam Domains

Protein Families

RST TAF4

Protein Analysis

332

Amino Acids

36.72

Weight (kDa)

9.47

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001612)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02790
rosa_laevigata	RLG00000028661 RLG00000030349 RLG00000030352 RLG00000030356 RLG00000030371 RLG00000030378 RLG00000030380 RLG00000030384 RLG00000030386 RLG00000030388
rosa_multiflora	Rmu_sc0000749.1_g000030 Rmu_sc0000749.1_g000053 Rmu_sc0001932.1_g000014 Rmu_sc0001932.1_g000030 Rmu_sc0002132.1_g000050 Rmu_sc0002263.1_g000033 Rmu_sc0004185.1_g000003
rosa_roxburghii	Rroxscaffold_4G00327000 Rroxscaffold_4G00327020 Rroxscaffold_4G00327130 Rroxscaffold_4G00327210
rosa_rugosa	Rorug01G0035600 Rorug01G0035800 Rorug06G0044400
rosa_samantha	Rh1AG048700 Rh1AG048800 Rh1AG048900 Rh1AG050900 Rh1AG051400 Rh1AG051700 Rh1AG051800 Rh1AG052300 Rh1AG053000 Rh1AG053100 Rh1AG053900 Rh1BG046300 Rh1CG018200 Rh1CG052600 Rh1CG052700 Rh1CG052900 Rh1CG053300 Rh1CG053400 Rh2AG524800
rosa_wichuraiana	Rw1G004420 Rw1G004460 Rw1G004520 Rw1G004600 Rw1G004650 Rw1G004690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	309
AasI	GACNNNNNNGTC	1 cut(s)	952
AatII	GACGTC	1 cut(s)	950
Acc36I	ACCTGC	1 cut(s)	309
AccII	CGCG	1 cut(s)	147
AciI	CCGC	7 cut(s)	145, 305, 430, 701, 782, 795, 819
AclWI	GGATC	2 cut(s)	404, 711
AcyI	GRCGYC	1 cut(s)	947
AfaI	GTAC	2 cut(s)	628, 892
AflII	CTTAAG	1 cut(s)	695
AgsI	TTSAA	1 cut(s)	251
AluBI	AGCT	6 cut(s)	101, 512, 544, 554, 709, 806
AluI	AGCT	6 cut(s)	101, 512, 544, 554, 709, 806
Alw26I	GTCTC	2 cut(s)	379, 445
AlwI	GGATC	2 cut(s)	404, 711
Ama87I	CYCGRG	1 cut(s)	714
AoxI	GGCC	1 cut(s)	212
ApaI	GGGCCC	1 cut(s)	216
ApeKI	GCWGC	7 cut(s)	223, 427, 632, 635, 647, 656, 986
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	2 cut(s)	212, 213
AsuC2I	CCSGG	2 cut(s)	715, 716
AsuHPI	GGTGA	1 cut(s)	3
AvaI	CYCGRG	1 cut(s)	714
BaeGI	GKGCMC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	216
BbvI	GCAGC	6 cut(s)	235, 439, 634, 643, 644, 647
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BcnI	CCSGG	2 cut(s)	715, 716
BcoDI	GTCTC	2 cut(s)	379, 445
BfaI	CTAG	2 cut(s)	513, 888
BfmI	CTRYAG	2 cut(s)	290, 984
BfrI	CTTAAG	1 cut(s)	695
BfuAI	ACCTGC	1 cut(s)	309
BisI	GCNGC	9 cut(s)	224, 306, 428, 633, 636, 648, 657, 819, 987
BlsI	GCNGC	9 cut(s)	225, 307, 429, 634, 637, 649, 658, 820, 988
BmcAI	AGTACT	1 cut(s)	892
Bme1390I	CCNGG	2 cut(s)	715, 716
BmeT110I	CYCGRG	1 cut(s)	714
BmgT120I	GGNCC	2 cut(s)	212, 213
BmiI	GGNNCC	3 cut(s)	213, 214, 939
BmrFI	CCNGG	2 cut(s)	715, 716
BmsI	GCATC	3 cut(s)	239, 350, 858
Bpu10I	CCTNAGC	1 cut(s)	555
BpuMI	CCSGG	2 cut(s)	715, 716
BsaHI	GRCGYC	1 cut(s)	947
BsaJI	CCNNGG	2 cut(s)	714, 747
Bse118I	RCCGGY	1 cut(s)	989
BseDI	CCNNGG	2 cut(s)	714, 747
BseGI	GGATG	1 cut(s)	919
BseMII	CTCAG	3 cut(s)	380, 551, 956
BseRI	GAGGAG	2 cut(s)	395, 634
BseSI	GKGCMC	1 cut(s)	216
BseXI	GCAGC	6 cut(s)	235, 439, 634, 643, 644, 647
BseYI	CCCAGC	1 cut(s)	821
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	714
BsiSI	CCGG	2 cut(s)	715, 990
BsmAI	GTCTC	2 cut(s)	379, 445
BsnI	GGCC	1 cut(s)	214
BsoBI	CYCGRG	1 cut(s)	714
Bsp120I	GGGCCC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	3 cut(s)	121, 396, 703
BspACI	CCGC	7 cut(s)	145, 305, 430, 701, 782, 795, 819
BspANI	GGCC	1 cut(s)	214
BspCNI	CTCAG	3 cut(s)	381, 550, 955
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	3 cut(s)	213, 214, 939
BspMAI	CTGCAG	2 cut(s)	294, 988
BspMI	ACCTGC	1 cut(s)	309
BspPI	GGATC	2 cut(s)	404, 711
BspQI	GCTCTTC	1 cut(s)	177
BspTI	CTTAAG	1 cut(s)	695
BsrFI	RCCGGY	1 cut(s)	989
BssAI	RCCGGY	1 cut(s)	989
BssECI	CCNNGG	2 cut(s)	714, 747
BssMI	GATC	3 cut(s)	121, 396, 703
BssNI	GRCGYC	1 cut(s)	947
BssT1I	CCWWGG	1 cut(s)	747
Bst4CI	ACNGT	3 cut(s)	420, 463, 763
Bst6I	CTCTTC	1 cut(s)	177
BstACI	GRCGYC	1 cut(s)	947
BstAFI	CTTAAG	1 cut(s)	695
BstAPI	GCANNNNNTGC	1 cut(s)	644
BstC8I	GCNNGC	2 cut(s)	197, 228
BstDEI	CTNAG	4 cut(s)	389, 537, 555, 942
BstF5I	GGATG	1 cut(s)	919
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	3 cut(s)	124, 399, 706
BstMAI	GTCTC	2 cut(s)	379, 445
BstMBI	GATC	3 cut(s)	121, 396, 703
BstMWI	GCNNNNNNNGC	7 cut(s)	211, 220, 274, 644, 653, 656, 827
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	713, 714
BstSFI	CTRYAG	2 cut(s)	290, 984
BstSLI	GKGCMC	1 cut(s)	216
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	6 cut(s)	235, 439, 634, 643, 644, 647
BsuRI	GGCC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	919
BtsI	GCAGTG	1 cut(s)	981
BtsIMutI	CAGTG	3 cut(s)	169, 459, 981
BveI	ACCTGC	1 cut(s)	309
Cac8I	GCNNGC	2 cut(s)	197, 228
CfoI	GCGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	989
Cfr13I	GGNCC	2 cut(s)	212, 213
Cfr9I	CCCGGG	1 cut(s)	714
CseI	GACGC	1 cut(s)	713
Csp6I	GTAC	2 cut(s)	627, 891
CspCI	CAANNNNNGTGG	2 cut(s)	357, 392
CviAII	CATG	4 cut(s)	196, 313, 596, 671
CviQI	GTAC	2 cut(s)	627, 891
DdeI	CTNAG	4 cut(s)	389, 537, 555, 942
DpnI	GATC	3 cut(s)	123, 398, 705
DpnII	GATC	3 cut(s)	121, 396, 703
DrdI	GACNNNNNNGTC	1 cut(s)	952
DseDI	GACNNNNNNGTC	1 cut(s)	952
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
EciI	GGCGGA	1 cut(s)	716
Eco130I	CCWWGG	1 cut(s)	747
Eco24I	GRGCYC	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	714
EcoO109I	RGGNCCY	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	747
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	747
FaeI	CATG	4 cut(s)	199, 316, 599, 674
FatI	CATG	4 cut(s)	195, 312, 595, 670
FauI	CCCGC	1 cut(s)	423
Fnu4HI	GCNGC	9 cut(s)	224, 306, 428, 633, 636, 648, 657, 819, 987
FokI	GGATG	1 cut(s)	926
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	9 cut(s)	224, 306, 428, 633, 636, 648, 657, 819, 987
FspBI	CTAG	2 cut(s)	513, 888
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	9 cut(s)	224, 306, 428, 633, 636, 648, 657, 819, 987
GsaI	CCCAGC	1 cut(s)	825
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	2 cut(s)	715, 990
HgaI	GACGC	1 cut(s)	713
HhaI	GCGC	1 cut(s)	195
Hin1I	GRCGYC	1 cut(s)	947
Hin1II	CATG	4 cut(s)	199, 316, 599, 674
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	3 cut(s)	168, 283, 496
HpaII	CCGG	2 cut(s)	715, 990
HphI	GGTGA	1 cut(s)	3
Hpy166II	GTNNAC	1 cut(s)	742
Hpy188I	TCNGA	3 cut(s)	475, 540, 945
Hpy188III	TCNNGA	5 cut(s)	125, 234, 251, 450, 929
Hpy8I	GTNNAC	1 cut(s)	742
Hpy99I	CGWCG	1 cut(s)	729
HpyAV	CCTTC	2 cut(s)	122, 257
HpyCH4III	ACNGT	3 cut(s)	420, 463, 763
HpyCH4IV	ACGT	1 cut(s)	947
HpyCH4V	TGCA	5 cut(s)	277, 292, 526, 659, 986
HpyF10VI	GCNNNNNNNGC	7 cut(s)	211, 220, 274, 644, 653, 656, 827
HpyF3I	CTNAG	4 cut(s)	389, 537, 555, 942
HpySE526I	ACGT	1 cut(s)	947
Hsp92I	GRCGYC	1 cut(s)	947
Hsp92II	CATG	4 cut(s)	199, 316, 599, 674
HspAI	GCGC	1 cut(s)	193
Kzo9I	GATC	3 cut(s)	121, 396, 703
LguI	GCTCTTC	1 cut(s)	177
LpnPI	CCDG	8 cut(s)	54, 254, 302, 304, 512, 728, 807, 914
Lsp1109I	GCAGC	6 cut(s)	235, 439, 634, 643, 644, 647
LweI	GCATC	3 cut(s)	239, 350, 858
MaeI	CTAG	2 cut(s)	513, 888
MaeII	ACGT	1 cut(s)	947
MalI	GATC	3 cut(s)	123, 398, 705
MboI	GATC	3 cut(s)	121, 396, 703
MboII	GAAGA	5 cut(s)	10, 194, 292, 617, 780
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	3 cut(s)	406, 489, 850
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	2 cut(s)	745, 814
MseI	TTAA	3 cut(s)	405, 546, 696
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	2 cut(s)	430, 821
MspCI	CTTAAG	1 cut(s)	695
MspI	CCGG	2 cut(s)	715, 990
MspR9I	CCNGG	2 cut(s)	715, 716
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	7 cut(s)	211, 220, 274, 644, 653, 656, 827
NciI	CCSGG	2 cut(s)	715, 716
NdeII	GATC	3 cut(s)	121, 396, 703
NlaIII	CATG	4 cut(s)	199, 316, 599, 674
NlaIV	GGNNCC	3 cut(s)	213, 214, 939
NspI	RCATGY	1 cut(s)	199
PaeI	GCATGC	1 cut(s)	199
PaqCI	CACCTGC	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	283, 496
PkrI	GCNGC	9 cut(s)	225, 307, 429, 634, 637, 649, 658, 820, 988
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	821
PspN4I	GGNNCC	3 cut(s)	213, 214, 939
PspOMI	GGGCCC	1 cut(s)	212
PspPI	GGNCC	2 cut(s)	212, 213
PstI	CTGCAG	2 cut(s)	294, 988
RsaI	GTAC	2 cut(s)	628, 892
RsaNI	GTAC	2 cut(s)	627, 891
RseI	CAYNNNNRTG	1 cut(s)	600
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	405, 546, 696
SatI	GCNGC	9 cut(s)	224, 306, 428, 633, 636, 648, 657, 819, 987
Sau3AI	GATC	3 cut(s)	121, 396, 703
Sau96I	GGNCC	2 cut(s)	212, 213
ScaI	AGTACT	1 cut(s)	892
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	2 cut(s)	715, 716
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	3 cut(s)	239, 350, 858
SfcI	CTRYAG	2 cut(s)	290, 984
SmaI	CCCGGG	1 cut(s)	716
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
SphI	GCATGC	1 cut(s)	199
Sse9I	AATT	3 cut(s)	406, 489, 850
SsiI	CCGC	7 cut(s)	145, 305, 430, 701, 782, 795, 819
SspMI	CTAG	2 cut(s)	513, 888
StyD4I	CCNGG	2 cut(s)	713, 714
StyI	CCWWGG	1 cut(s)	747
TaaI	ACNGT	3 cut(s)	420, 463, 763
TaiI	ACGT	1 cut(s)	950
TaqI	TCGA	4 cut(s)	235, 422, 449, 727
TasI	AATT	3 cut(s)	406, 489, 850
TatI	WGTACW	2 cut(s)	626, 890
TauI	GCSGC	2 cut(s)	308, 821
TfiI	GAWTC	2 cut(s)	283, 496
Tru1I	TTAA	3 cut(s)	405, 546, 696
Tru9I	TTAA	3 cut(s)	405, 546, 696
TscAI	CASTG	3 cut(s)	169, 466, 988
TseI	GCWGC	7 cut(s)	223, 427, 632, 635, 647, 656, 986
TspDTI	ATGAA	4 cut(s)	564, 618, 744, 992
TspGWI	ACGGA	1 cut(s)	585
TspMI	CCCGGG	1 cut(s)	714
TspRI	CASTG	3 cut(s)	169, 466, 988
Vha464I	CTTAAG	1 cut(s)	695
XceI	RCATGY	1 cut(s)	199
XmaI	CCCGGG	1 cut(s)	714
XspI	CTAG	2 cut(s)	513, 888
ZraI	GACGTC	1 cut(s)	948
ZrmI	AGTACT	1 cut(s)	892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.