FvH4_7g12600

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
11401891 .. 11404075
2185 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12600.t1

Sequence Viewer

Length: 1140 bp
ATGTTAGCCATGCCAATGCCTCCTTCTAACCATCCTTCATCACTAAACCAAACAAAGCATGAGAATGAACGAACCTCTTTGGTCTTTGATGCCCCAGTTCTACAATATGAGTCCAACATACCACCCCAGTTCATATGGCCAGACAACGAAAAGCCATGCCCCGATCGACTAGAGCTTCTAGTTCCTCCCATTGACCTGAAAGGCTTTCTCACCGGGGATGCTTCGGTTGTCTCCGAAGCCATTCGTACCGTCGACGAGGCATGCAAGAAACATGGATTCTTTCTCATTGTGAATCATGGAGTTGATTTCCAACTCATAGAAAAAGCTCATGAGTACATGGACGCGTTCTTCAGCATGAAACTCGCGGAGAAGCAAAGGGCTCAGAGAAAGGTTGGTGACAGCTGCGGATATGCTAGTAGCTTCACTGGCAGGTTCTCCTCCAAACTTCCTTGGAAAGAAACTCTTTCTTTCAGATCCTGTGCTGATAGCCAGTGCTCAACAATTGTGAAGGACTATTTCGTGAATGTGATGGGTGAAGATTTCGCAGAATTCGGGAAGGTGTACCAAGAATATGTTGAAGCCATGAACAATCTCACTAATGGAATCATGGAGCTACTAGGACTAAGCCTAGGAGTTGGTCGAGAGTATTTCAAAGAATTCTTCGAAGGAAATGATTCCATAATGAGGTTGAACTACTATCCAATATGCCAGAAACCAGATTTAACCCTAGGAACTGGTCCTCACTGTGATCCCACATCGTTGACGATCCTGCATCAGGACCAAGTTGGTGGCCTTGAAGTGTTTGTTGATGAAAAGTGGCATGCCATCACTCCTATCCTTGATTCCTTCGTTATCAACGTTGGTGACACATTTATGGCTCTATCAAATGGGATATACAAGAGCTGCTTACACAGAGCAGTTGTAAACAACAAAACTGTAAGGAAATCACTAGCTTTCTTTCTTTGCCCAAACAAAGACAAAGTGGTGACCCCGCCAACAAGCTTGGTCGATACTGAAACACCAAGGTTGTATCCTGACTTCACTTGGCCTAGTCTGCTCGAGTTTACACAGAAGCACTATAGGGCTGACATAAGAACCTTGGATGCTTTCTCTGACTGGATTTCACAGAATAGCAACTAA

Protein Analysis

380

Amino Acids

42.92

Weight (kDa)

5.34

Isoelectric Point (pI)

28.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 61 - 161 3.1e-22 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 225 - 323 2.8e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis pycom02g16160
rosa_chinensis RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 420
AccI GTMKAC 1 cut(s) 252
AccII CGCG 2 cut(s) 344, 365
AciI CCGC 3 cut(s) 365, 405, 992
AclI AACGTT 1 cut(s) 858
AclWI GGATC 3 cut(s) 468, 743, 760
AcoI YGGCCR 1 cut(s) 137
AcsI RAATTY 2 cut(s) 548, 656
AcuI CTGAAG 1 cut(s) 334
AfaI GTAC 3 cut(s) 247, 335, 563
AfiI CCNNNNNNNGG 2 cut(s) 684, 775
AflIII ACRYGT 1 cut(s) 342
AgsI TTSAA 4 cut(s) 578, 652, 691, 797
AjuI GAANNNNNNNTTGG 2 cut(s) 7, 39
AluBI AGCT 8 cut(s) 175, 326, 402, 420, 613, 903, 953, 1002
AluI AGCT 8 cut(s) 175, 326, 402, 420, 613, 903, 953, 1002
Alw21I GWGCWC 1 cut(s) 497
Alw26I GTCTC 1 cut(s) 235
AlwI GGATC 3 cut(s) 468, 743, 760
AlwNI CAGNNNCTG 1 cut(s) 477
Ama87I CYCGRG 1 cut(s) 1058
AoxI GGCC 3 cut(s) 137, 790, 1046
ApeKI GCWGC 2 cut(s) 402, 903
ApoI RAATTY 2 cut(s) 548, 656
Asp700I GAANNNNTTC 2 cut(s) 240, 673
AspA2I CCTAGG 2 cut(s) 628, 727
AspS9I GGNCC 2 cut(s) 737, 778
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 5 cut(s) 202, 407, 545, 875, 997
AsuII TTCGAA 1 cut(s) 663
AvaI CYCGRG 1 cut(s) 1058
AvaII GGWCC 2 cut(s) 737, 778
AvrII CCTAGG 2 cut(s) 628, 727
BalI TGGCCA 1 cut(s) 139
BanII GRGCYC 1 cut(s) 382
BarI GAAGNNNNNNTAC 2 cut(s) 1022, 1054
Bbv12I GWGCWC 1 cut(s) 497
BbvI GCAGC 2 cut(s) 389, 890
BccI CCATC 3 cut(s) 39, 523, 833
BcgI CGANNNNNNTGC 2 cut(s) 343, 377
BciVI GTATCC 1 cut(s) 1041
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 235
BfaI CTAG 8 cut(s) 170, 179, 414, 617, 629, 728, 950, 1050
BfmI CTRYAG 1 cut(s) 1078
BfuAI ACCTGC 1 cut(s) 420
BfuI GTATCC 1 cut(s) 1041
BisI GCNGC 2 cut(s) 403, 904
BlnI CCTAGG 2 cut(s) 628, 727
BlsI GCNGC 2 cut(s) 404, 905
Bme1390I CCNGG 1 cut(s) 214
Bme18I GGWCC 2 cut(s) 737, 778
BmeT110I CYCGRG 1 cut(s) 1058
BmgT120I GGNCC 2 cut(s) 737, 778
BmrFI CCNGG 1 cut(s) 214
BmrI ACTGGG 2 cut(s) 89, 121
BmsI GCATC 4 cut(s) 79, 208, 781, 1093
BmuI ACTGGG 2 cut(s) 89, 121
Bpu14I TTCGAA 1 cut(s) 663
BpuMI CCSGG 1 cut(s) 214
BsaJI CCNNGG 6 cut(s) 213, 449, 628, 727, 1022, 1098
Bsc4I CCNNNNNNNGG 2 cut(s) 684, 775
Bse1I ACTGG 6 cut(s) 95, 127, 430, 490, 739, 1121
BseDI CCNNGG 6 cut(s) 213, 449, 628, 727, 1022, 1098
BseGI GGATG 3 cut(s) 31, 223, 1108
BseLI CCNNNNNNNGG 2 cut(s) 684, 775
BseMII CTCAG 1 cut(s) 395
BseNI ACTGG 6 cut(s) 95, 127, 430, 490, 739, 1121
BseRI GAGGAG 1 cut(s) 427
BseXI GCAGC 2 cut(s) 389, 890
Bsh1236I CGCG 2 cut(s) 344, 365
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 3 cut(s) 139, 792, 1048
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 497
BsiHKCI CYCGRG 1 cut(s) 1058
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 2 cut(s) 684, 775
BsmAI GTCTC 1 cut(s) 235
BsnI GGCC 3 cut(s) 139, 792, 1048
BsoBI CYCGRG 1 cut(s) 1058
Bsp119I TTCGAA 1 cut(s) 663
Bsp1286I GDGCHC 2 cut(s) 382, 497
Bsp143I GATC 4 cut(s) 163, 473, 748, 765
BspACI CCGC 3 cut(s) 365, 405, 992
BspANI GGCC 3 cut(s) 139, 792, 1048
BspCNI CTCAG 1 cut(s) 394
BspFNI CGCG 2 cut(s) 344, 365
BspHI TCATGA 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 420
BspPI GGATC 3 cut(s) 468, 743, 760
BspT104I TTCGAA 1 cut(s) 663
BsrI ACTGG 6 cut(s) 95, 127, 430, 490, 739, 1121
BssECI CCNNGG 6 cut(s) 213, 449, 628, 727, 1022, 1098
BssMI GATC 4 cut(s) 163, 473, 748, 765
BssT1I CCWWGG 5 cut(s) 449, 628, 727, 1022, 1098
Bst4CI ACNGT 3 cut(s) 250, 746, 937
BstBI TTCGAA 1 cut(s) 663
BstC8I GCNNGC 2 cut(s) 262, 822
BstDEI CTNAG 2 cut(s) 381, 623
BstEII GGTNACC 1 cut(s) 985
BstENI CCTNNNNNAGG 1 cut(s) 773
BstF5I GGATG 3 cut(s) 31, 223, 1108
BstFNI CGCG 2 cut(s) 344, 365
BstKTI GATC 4 cut(s) 166, 476, 751, 768
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 4 cut(s) 163, 473, 748, 765
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 2 cut(s) 426, 1054
BstNSI RCATGY 2 cut(s) 264, 824
BstPI GGTNACC 1 cut(s) 985
BstSCI CCNGG 1 cut(s) 212
BstSFI CTRYAG 1 cut(s) 1078
BstUI CGCG 2 cut(s) 344, 365
BstV1I GCAGC 2 cut(s) 389, 890
BstX2I RGATCY 1 cut(s) 473
BstXI CCANNNNNNTGG 1 cut(s) 788
BstYI RGATCY 1 cut(s) 473
BsuI GTATCC 1 cut(s) 1041
BsuRI GGCC 3 cut(s) 139, 792, 1048
BtsCI GGATG 3 cut(s) 31, 223, 1108
BtsIMutI CAGTG 3 cut(s) 423, 497, 742
BveI ACCTGC 1 cut(s) 420
Cac8I GCNNGC 2 cut(s) 262, 822
CaiI CAGNNNCTG 1 cut(s) 477
CciI TCATGA 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 737, 778
CseI GACGC 1 cut(s) 350
Csp6I GTAC 3 cut(s) 246, 334, 562
CviQI GTAC 3 cut(s) 246, 334, 562
DdeI CTNAG 2 cut(s) 381, 623
DpnI GATC 4 cut(s) 165, 475, 750, 767
DpnII GATC 4 cut(s) 163, 473, 748, 765
EaeI YGGCCR 1 cut(s) 137
Eco130I CCWWGG 5 cut(s) 449, 628, 727, 1022, 1098
Eco24I GRGCYC 1 cut(s) 382
Eco47I GGWCC 2 cut(s) 737, 778
Eco57I CTGAAG 1 cut(s) 334
Eco88I CYCGRG 1 cut(s) 1058
Eco91I GGTNACC 1 cut(s) 985
EcoNI CCTNNNNNAGG 1 cut(s) 773
EcoO65I GGTNACC 1 cut(s) 985
EcoRI GAATTC 2 cut(s) 548, 656
EcoT14I CCWWGG 5 cut(s) 449, 628, 727, 1022, 1098
EcoT38I GRGCYC 1 cut(s) 382
ErhI CCWWGG 5 cut(s) 449, 628, 727, 1022, 1098
FalI AAGNNNNNCTT 4 cut(s) 447, 479, 890, 922
FauI CCCGC 1 cut(s) 999
FauNDI CATATG 1 cut(s) 134
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 2 cut(s) 403, 904
FokI GGATG 3 cut(s) 18, 230, 1115
FriOI GRGCYC 1 cut(s) 382
Fsp4HI GCNGC 2 cut(s) 403, 904
FspBI CTAG 8 cut(s) 170, 179, 414, 617, 629, 728, 950, 1050
GluI GCNGC 2 cut(s) 403, 904
HaeIII GGCC 3 cut(s) 139, 792, 1048
HapII CCGG 1 cut(s) 213
HgaI GACGC 1 cut(s) 350
HincII GTYRAC 2 cut(s) 253, 762
HindII GTYRAC 2 cut(s) 253, 762
HindIII AAGCTT 1 cut(s) 1000
HinfI GANTC 6 cut(s) 110, 276, 292, 603, 674, 842
HpaII CCGG 1 cut(s) 213
HphI GGTGA 5 cut(s) 202, 407, 545, 875, 997
Hpy166II GTNNAC 5 cut(s) 253, 562, 762, 925, 1065
Hpy188I TCNGA 4 cut(s) 235, 384, 473, 1114
Hpy188III TCNNGA 6 cut(s) 329, 520, 553, 641, 776, 1034
Hpy8I GTNNAC 5 cut(s) 253, 562, 762, 925, 1065
Hpy99I CGWCG 2 cut(s) 254, 257
HpyAV CCTTC 6 cut(s) 33, 45, 502, 550, 659, 856
HpyCH4III ACNGT 3 cut(s) 250, 746, 937
HpyCH4IV ACGT 1 cut(s) 858
HpyCH4V TGCA 2 cut(s) 264, 772
HpyF10VI GCNNNNNNNGC 2 cut(s) 426, 1054
HpyF3I CTNAG 2 cut(s) 381, 623
HpySE526I ACGT 1 cut(s) 858
Kzo9I GATC 4 cut(s) 163, 473, 748, 765
LmnI GCTCC 1 cut(s) 610
Lsp1109I GCAGC 2 cut(s) 389, 890
LweI GCATC 4 cut(s) 79, 208, 781, 1093
MaeI CTAG 8 cut(s) 170, 179, 414, 617, 629, 728, 950, 1050
MaeII ACGT 1 cut(s) 858
MaeIII GTNAC 3 cut(s) 395, 863, 985
MalI GATC 4 cut(s) 165, 475, 750, 767
MboI GATC 4 cut(s) 163, 473, 748, 765
MboII GAAGA 3 cut(s) 340, 548, 652
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 1 cut(s) 473
MhlI GDGCHC 2 cut(s) 382, 497
MlsI TGGCCA 1 cut(s) 139
MluCI AATT 3 cut(s) 501, 548, 656
MluI ACGCGT 1 cut(s) 342
MluNI TGGCCA 1 cut(s) 139
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 2 cut(s) 138, 334
MnlI CCTC 7 cut(s) 30, 85, 195, 250, 448, 678, 750
Mox20I TGGCCA 1 cut(s) 139
MroXI GAANNNNTTC 2 cut(s) 240, 673
MscI TGGCCA 1 cut(s) 139
MseI TTAA 1 cut(s) 722
MslI CAYNNNNRTG 3 cut(s) 14, 63, 872
Msp20I TGGCCA 1 cut(s) 139
MspA1I CMGCKG 1 cut(s) 402
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 214
MunI CAATTG 1 cut(s) 501
MvnI CGCG 2 cut(s) 344, 365
MwoI GCNNNNNNNGC 2 cut(s) 426, 1054
NciI CCSGG 1 cut(s) 214
NdeI CATATG 1 cut(s) 134
NdeII GATC 4 cut(s) 163, 473, 748, 765
NmuCI GTSAC 3 cut(s) 395, 863, 985
NspI RCATGY 2 cut(s) 264, 824
NspV TTCGAA 1 cut(s) 663
PaeI GCATGC 2 cut(s) 264, 824
PaeR7I CTCGAG 1 cut(s) 1058
PagI TCATGA 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 855
PdmI GAANNNNTTC 2 cut(s) 240, 673
PfeI GAWTC 5 cut(s) 276, 292, 603, 674, 842
PkrI GCNGC 2 cut(s) 404, 905
Ple19I CGATCG 1 cut(s) 166
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
Psp1406I AACGTT 1 cut(s) 858
PspEI GGTNACC 1 cut(s) 985
PspPI GGNCC 2 cut(s) 737, 778
PspXI VCTCGAGB 1 cut(s) 1058
PstNI CAGNNNCTG 1 cut(s) 477
PsuI RGATCY 1 cut(s) 473
PvuI CGATCG 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 402
RsaI GTAC 3 cut(s) 247, 335, 563
RsaNI GTAC 3 cut(s) 246, 334, 562
RseI CAYNNNNRTG 3 cut(s) 14, 63, 872
SalI GTCGAC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 722
SatI GCNGC 2 cut(s) 403, 904
Sau3AI GATC 4 cut(s) 163, 473, 748, 765
Sau96I GGNCC 2 cut(s) 737, 778
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 214
SduI GDGCHC 2 cut(s) 382, 497
SfaNI GCATC 4 cut(s) 79, 208, 781, 1093
SfcI CTRYAG 1 cut(s) 1078
Sfr274I CTCGAG 1 cut(s) 1058
SfuI TTCGAA 1 cut(s) 663
SgrDI CGTCGACG 1 cut(s) 251
SinI GGWCC 2 cut(s) 737, 778
SlaI CTCGAG 1 cut(s) 1058
SmiMI CAYNNNNRTG 3 cut(s) 14, 63, 872
SmlI CTYRAG 1 cut(s) 1058
SmoI CTYRAG 1 cut(s) 1058
SphI GCATGC 2 cut(s) 264, 824
Sse9I AATT 3 cut(s) 501, 548, 656
SsiI CCGC 3 cut(s) 365, 405, 992
SspMI CTAG 8 cut(s) 170, 179, 414, 617, 629, 728, 950, 1050
StyD4I CCNGG 1 cut(s) 212
StyI CCWWGG 5 cut(s) 449, 628, 727, 1022, 1098
TaaI ACNGT 3 cut(s) 250, 746, 937
TaiI ACGT 1 cut(s) 861
TaqI TCGA 6 cut(s) 166, 252, 640, 663, 1008, 1059
TasI AATT 3 cut(s) 501, 548, 656
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 5 cut(s) 276, 292, 603, 674, 842
Tru1I TTAA 1 cut(s) 722
Tru9I TTAA 1 cut(s) 722
TscAI CASTG 3 cut(s) 430, 497, 749
TseFI GTSAC 3 cut(s) 395, 863, 985
TseI GCWGC 2 cut(s) 402, 903
Tsp45I GTSAC 3 cut(s) 395, 863, 985
TspDTI ATGAA 6 cut(s) 27, 81, 121, 371, 599, 825
TspRI CASTG 3 cut(s) 430, 497, 749
VpaK11BI GGWCC 2 cut(s) 737, 778
XagI CCTNNNNNAGG 1 cut(s) 773
XapI RAATTY 2 cut(s) 548, 656
XceI RCATGY 2 cut(s) 264, 824
XhoI CTCGAG 1 cut(s) 1058
XmaJI CCTAGG 2 cut(s) 628, 727
XmiI GTMKAC 1 cut(s) 252
XmnI GAANNNNTTC 2 cut(s) 240, 673
XspI CTAG 8 cut(s) 170, 179, 414, 617, 629, 728, 950, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.