Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000462

Physical Location & Seq

Genomic Coordinates Forward (+)

44435680 .. 44436822

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG234000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCCGGTGCCTGCTGCTGCTGAGCAAACCCCTGTGGTTTTCGACTCCCAAGTTATTCAGTACCAATCCAACATCCCTTCCAAGTTCATATGGCCGGACCACGAGAAGCCGAGCCCCAACCGGCCGGACCTTCTCGCTCCGGCCATCGACCTCAGAAGCGATTCTGCCATCGTCGCGAACTCGATTCGTTCGGTCGACGAGGCCTGCAAGAAGCATGGATTCTTCCTCATTGTGAACCACGGAGTTGATCCGGTGCTTTTTGCCAAAGCTCACGAGTACATGGACGTGTTCTTTGAGATGAAGCTCTCCGAGGAGCAAAGGGCTCAGAGGAAGATTGGTGAGAGCAATGGTTATTCTAGTAGCTTCACCGGCGGGTTTAACTCCAAGCTTCCATGGAAAGAAACACTTTCTTTCAGGTACTCTGCTGAGAGGCAGAGCTCAACAGTCGTCAAGGACTACTTTGTGAATGTGTTGGGTGAAGATTTCAGAGAAATCAGGAAGTTCTACCAAGAATACTTGGAGGTGATAAACAAACTATCCAATGGGATACTGGAGCTACTGGGACTGAGCCTGGGAGTTGGGCAGGAGTACTTCAAAGAGTTCTACGAAGGAAACAATTCGATCATCAGGTTGAACTACTATCCAATGTGCCAAAAACCATATTCAACACTGGGAACTGGGCCTCACTGTGATCCCACTTCCTTGATAATCCTTCATCAGGATCAAGTAGGGGACTTGAAGTGTTTTTCGATGAGAAGTGGCACACCGTTACTCCTGTCCTTGGTTCTTTCGTTGTCAACATTGGTGATACTTTTATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010228 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045544 GO:0046394 GO:0048366 GO:0048367 GO:0048572 GO:0048573 GO:0048575 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

273

Amino Acids

30.9

Weight (kDa)

5.72

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	47 - 146	1.3e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	206 - 250	1.1e-10	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca	FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica	MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica	Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis	pycom02g16160
rosa_chinensis	RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata	RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora	Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa	Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha	Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana	Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	176
AciI	CCGC	1 cut(s)	372
AclWI	GGATC	3 cut(s)	242, 686, 729
AcoI	YGGCCR	3 cut(s)	92, 122, 141
AfaI	GTAC	4 cut(s)	62, 278, 419, 590
AfiI	CCNNNNNNNGG	2 cut(s)	718, 781
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	4 cut(s)	595, 634, 666, 739
AjiI	CACGTC	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	6 cut(s)	269, 304, 363, 388, 438, 556
AluI	AGCT	6 cut(s)	269, 304, 363, 388, 438, 556
Alw21I	GWGCWC	1 cut(s)	440
AlwI	GGATC	3 cut(s)	242, 686, 729
AoxI	GGCC	5 cut(s)	92, 122, 141, 201, 680
ApeKI	GCWGC	2 cut(s)	14, 17
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
Asp700I	GAANNNNTTC	2 cut(s)	160, 616
AspS9I	GGNCC	3 cut(s)	97, 127, 680
AsuHPI	GGTGA	5 cut(s)	350, 358, 488, 535, 817
AvaII	GGWCC	2 cut(s)	97, 127
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	3 cut(s)	116, 325, 440
BauI	CACGAG	2 cut(s)	101, 272
Bbv12I	GWGCWC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	2 cut(s)	152, 176
BciT130I	CCWGG	1 cut(s)	572
BciVI	GTATCC	1 cut(s)	540
BfaI	CTAG	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	540
BisI	GCNGC	2 cut(s)	15, 18
BlpI	GCTNAGC	1 cut(s)	21
BlsI	GCNGC	2 cut(s)	16, 19
BmcAI	AGTACT	1 cut(s)	590
Bme1390I	CCNGG	1 cut(s)	572
Bme18I	GGWCC	2 cut(s)	97, 127
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	3 cut(s)	97, 127, 680
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	572
BmrI	ACTGGG	3 cut(s)	569, 680, 687
BmuI	ACTGGG	3 cut(s)	569, 680, 687
BpmI	CTGGAG	1 cut(s)	572
Bpu1102I	GCTNAGC	1 cut(s)	21
BsaJI	CCNNGG	5 cut(s)	238, 309, 392, 571, 780
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	756, 786
Bsc4I	CCNNNNNNNGG	2 cut(s)	718, 781
Bse118I	RCCGGY	3 cut(s)	4, 120, 368
Bse1I	ACTGG	4 cut(s)	555, 564, 675, 682
Bse3DI	GCAATG	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	572
BseDI	CCNNGG	5 cut(s)	238, 309, 392, 571, 780
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	2 cut(s)	718, 781
BseMI	GCAATG	1 cut(s)	352
BseMII	CTCAG	5 cut(s)	12, 166, 338, 417, 557
BseNI	ACTGG	4 cut(s)	555, 564, 675, 682
BseRI	GAGGAG	1 cut(s)	326
BseX3I	CGGCCG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	2 cut(s)	125, 195
BshFI	GGCC	5 cut(s)	94, 124, 143, 203, 682
BshNI	GGYRCC	1 cut(s)	7
BsiEI	CGRYCG	2 cut(s)	125, 195
BsiHKAI	GWGCWC	1 cut(s)	440
BsiSI	CCGG	7 cut(s)	5, 95, 121, 125, 140, 251, 369
BslFI	GGGAC	2 cut(s)	576, 746
BslI	CCNNNNNNNGG	2 cut(s)	718, 781
BsmFI	GGGAC	2 cut(s)	576, 746
BsnI	GGCC	5 cut(s)	94, 124, 143, 203, 682
Bsp1286I	GDGCHC	3 cut(s)	116, 325, 440
Bsp143I	GATC	4 cut(s)	247, 621, 691, 721
Bsp1720I	GCTNAGC	1 cut(s)	21
Bsp19I	CCATGG	1 cut(s)	392
Bsp68I	TCGCGA	1 cut(s)	176
BspACI	CCGC	1 cut(s)	372
BspANI	GGCC	5 cut(s)	94, 124, 143, 203, 682
BspCNI	CTCAG	5 cut(s)	13, 165, 337, 418, 558
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	3 cut(s)	242, 686, 729
BspT107I	GGYRCC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	352
BsrFI	RCCGGY	3 cut(s)	4, 120, 368
BsrI	ACTGG	4 cut(s)	555, 564, 675, 682
BssAI	RCCGGY	3 cut(s)	4, 120, 368
BssECI	CCNNGG	5 cut(s)	238, 309, 392, 571, 780
BssMI	GATC	4 cut(s)	247, 621, 691, 721
BssSI	CACGAG	2 cut(s)	101, 272
BssT1I	CCWWGG	2 cut(s)	392, 780
Bst2BI	CACGAG	2 cut(s)	101, 272
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	3 cut(s)	445, 689, 768
BstC8I	GCNNGC	2 cut(s)	12, 205
BstDEI	CTNAG	5 cut(s)	21, 152, 324, 426, 566
BstDSI	CCRYGG	2 cut(s)	238, 392
BstENI	CCTNNNNNAGG	1 cut(s)	716
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	176
BstKTI	GATC	4 cut(s)	250, 624, 694, 724
BstMBI	GATC	4 cut(s)	247, 621, 691, 721
BstMCI	CGRYCG	2 cut(s)	125, 195
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 369
BstNI	CCWGG	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	570
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	122
BsuI	GTATCC	1 cut(s)	540
BsuRI	GGCC	5 cut(s)	94, 124, 143, 203, 682
BtgI	CCRYGG	2 cut(s)	238, 392
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	668, 685
BtuMI	TCGCGA	1 cut(s)	176
Cac8I	GCNNGC	2 cut(s)	12, 205
Cfr10I	RCCGGY	3 cut(s)	4, 120, 368
Cfr13I	GGNCC	3 cut(s)	97, 127, 680
Csp6I	GTAC	4 cut(s)	61, 277, 418, 589
CviAII	CATG	3 cut(s)	215, 280, 393
CviQI	GTAC	4 cut(s)	61, 277, 418, 589
DdeI	CTNAG	5 cut(s)	21, 152, 324, 426, 566
DpnI	GATC	4 cut(s)	249, 623, 693, 723
DpnII	GATC	4 cut(s)	247, 621, 691, 721
EaeI	YGGCCR	3 cut(s)	92, 122, 141
EagI	CGGCCG	1 cut(s)	122
Ecl136II	GAGCTC	1 cut(s)	438
EclXI	CGGCCG	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	392, 780
Eco147I	AGGCCT	1 cut(s)	203
Eco24I	GRGCYC	3 cut(s)	116, 325, 440
Eco47I	GGWCC	2 cut(s)	97, 127
Eco52I	CGGCCG	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	438
EcoNI	CCTNNNNNAGG	1 cut(s)	716
EcoRII	CCWGG	1 cut(s)	570
EcoT14I	CCWWGG	2 cut(s)	392, 780
EcoT38I	GRGCYC	3 cut(s)	116, 325, 440
ErhI	CCWWGG	2 cut(s)	392, 780
FaeI	CATG	3 cut(s)	218, 283, 396
FaiI	YATR	7 cut(s)	89, 91, 216, 281, 394, 661, 817
FalI	AAGNNNNNCTT	4 cut(s)	390, 422, 443, 475
FaqI	GGGAC	2 cut(s)	576, 746
FatI	CATG	3 cut(s)	214, 279, 392
FauI	CCCGC	1 cut(s)	365
FauNDI	CATATG	1 cut(s)	89
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	15, 18
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	3 cut(s)	116, 325, 440
Fsp4HI	GCNGC	2 cut(s)	15, 18
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	2 cut(s)	15, 18
GsuI	CTGGAG	1 cut(s)	572
HaeIII	GGCC	5 cut(s)	94, 124, 143, 203, 682
HapII	CCGG	7 cut(s)	5, 95, 121, 125, 140, 251, 369
Hin1II	CATG	3 cut(s)	218, 283, 396
HincII	GTYRAC	2 cut(s)	196, 798
HindII	GTYRAC	2 cut(s)	196, 798
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	4 cut(s)	44, 161, 184, 219
HpaII	CCGG	7 cut(s)	5, 95, 121, 125, 140, 251, 369
HphI	GGTGA	5 cut(s)	350, 358, 488, 535, 817
Hpy166II	GTNNAC	3 cut(s)	196, 235, 798
Hpy188I	TCNGA	4 cut(s)	155, 310, 327, 488
Hpy188III	TCNNGA	4 cut(s)	175, 272, 496, 719
Hpy8I	GTNNAC	3 cut(s)	196, 235, 798
Hpy99I	CGWCG	2 cut(s)	176, 200
HpyAV	CCTTC	4 cut(s)	87, 140, 602, 722
HpyCH4III	ACNGT	3 cut(s)	445, 689, 768
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 369
HpyF3I	CTNAG	5 cut(s)	21, 152, 324, 426, 566
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	218, 283, 396
Kzo9I	GATC	4 cut(s)	247, 621, 691, 721
LmnI	GCTCC	3 cut(s)	142, 313, 553
Lsp1109I	GCAGC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	768
MalI	GATC	4 cut(s)	249, 623, 693, 723
MboI	GATC	4 cut(s)	247, 621, 691, 721
MboII	GAAGA	3 cut(s)	214, 343, 491
MhlI	GDGCHC	3 cut(s)	116, 325, 440
MluCI	AATT	1 cut(s)	616
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	8 cut(s)	161, 193, 236, 304, 321, 423, 514, 693
MroXI	GAANNNNTTC	2 cut(s)	160, 616
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	1 cut(s)	284
MspI	CCGG	7 cut(s)	5, 95, 121, 125, 140, 251, 369
MspR9I	CCNGG	1 cut(s)	572
MvaI	CCWGG	1 cut(s)	572
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	173, 369
NcoI	CCATGG	1 cut(s)	392
NdeI	CATATG	1 cut(s)	89
NdeII	GATC	4 cut(s)	247, 621, 691, 721
NlaIII	CATG	3 cut(s)	218, 283, 396
NlaIV	GGNNCC	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	135
NruI	TCGCGA	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	203
PdmI	GAANNNNTTC	2 cut(s)	160, 616
PfeI	GAWTC	3 cut(s)	161, 184, 219
PkrI	GCNGC	2 cut(s)	16, 19
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	3 cut(s)	97, 127, 680
RruI	TCGCGA	1 cut(s)	176
RsaI	GTAC	4 cut(s)	62, 278, 419, 590
RsaNI	GTAC	4 cut(s)	61, 277, 418, 589
RseI	CAYNNNNRTG	1 cut(s)	284
SacI	GAGCTC	1 cut(s)	440
SalI	GTCGAC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	2 cut(s)	15, 18
Sau3AI	GATC	4 cut(s)	247, 621, 691, 721
Sau96I	GGNCC	3 cut(s)	97, 127, 680
ScaI	AGTACT	1 cut(s)	590
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	572
SduI	GDGCHC	3 cut(s)	116, 325, 440
SgrAI	CRCCGGYG	1 cut(s)	368
SinI	GGWCC	2 cut(s)	97, 127
SmiMI	CAYNNNNRTG	1 cut(s)	284
Sse9I	AATT	1 cut(s)	616
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	1 cut(s)	372
SspMI	CTAG	1 cut(s)	357
SstI	GAGCTC	1 cut(s)	440
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	570
StyI	CCWWGG	2 cut(s)	392, 780
TaaI	ACNGT	3 cut(s)	445, 689, 768
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	6 cut(s)	42, 147, 182, 195, 620, 749
TaqII	GACCGA	1 cut(s)	181
TasI	AATT	1 cut(s)	616
TatI	WGTACW	2 cut(s)	276, 588
TfiI	GAWTC	3 cut(s)	161, 184, 219
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	2 cut(s)	675, 692
TseI	GCWGC	2 cut(s)	14, 17
TspDTI	ATGAA	3 cut(s)	76, 314, 704
TspGWI	ACGGA	1 cut(s)	255
TspRI	CASTG	2 cut(s)	675, 692
VpaK11BI	GGWCC	2 cut(s)	97, 127
XagI	CCTNNNNNAGG	1 cut(s)	716
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XmiI	GTMKAC	1 cut(s)	195
XmnI	GAANNNNTTC	2 cut(s)	160, 616
XspI	CTAG	1 cut(s)	357
ZrmI	AGTACT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.