RLG00000028396

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
22231010 .. 22232165
1156 bp
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UTR
Exon/CDS
Intron
RLM00000028396

Sequence Viewer

Length: 750 bp
ATGCCGGTGCCTGCTGCTGCTGAGCAAACCCCTGTGGTTTTCGACTCCCAAGTCATTCAGTACCAATCCAACATCGCTTCCAAGTTCATATGGCCGGCCCATGAGAAGCCGAGCCCCAACAGGCCGGACCTTCTCGCTCCGGCCATCGACCTCAGAAGCGATTCTGCCATTGTCGCGAACTCGATTCGTTCTGTCGACGAGGCCTGCAAGAAGCATGGATTCTTCCTCATTGTGAACCACGGAGTTGATCCGGTGCTTTTTGCGAAAGCTCACGAGTACATGGACGTGTTCTTTGAGATGAAGCTCTCGGAGAAGCAAAGGGCGCCTCAGAGGAAGATTGGTGAGAGCAATGGTTATTCTAGTAGCTTCACCGGCAGGTTTAACTCCAAGCTTCCGTGGAAAGAAACACTTTCTTTCAGGAAGTTCTACCAAGAATACTTGGAGGTGATGAACAAACTATCCAATGGGATACTGGAGCTACTGGGACTGAGCCTGGGAGTTGGGCAGGAGTACTTCAAAGAGTTCTACGAAGGAAACAATTCGATCATCAGGTTGAACTACTATCCAATGTGCCAAAAACCAGATTTAACACTAGGAGCTGGGCCTCACTGTGATCCCACTTCCTTGATAATCCTTCATCAGGATCAAGTAGGGGGACTTGAAGTGTTTTTGGATGAGAAGTGGCACACCGTTACTCCTGTCCTTGGTTCTTTCGTTGTCAACATTGGTGATACTTTTATGGTAAGTTAA

Protein Analysis

250

Amino Acids

28.02

Weight (kDa)

5.81

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 47 - 142 7.2e-20 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 180 - 248 2.1e-20 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis pycom02g16160
rosa_chinensis RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 50
Acc36I ACCTGC 1 cut(s) 366
AccB1I GGYRCC 2 cut(s) 7, 322
AccI GTMKAC 1 cut(s) 195
AccII CGCG 1 cut(s) 176
AclWI GGATC 3 cut(s) 242, 608, 651
AcoI YGGCCR 2 cut(s) 92, 141
AcyI GRCGYC 1 cut(s) 323
AfaI GTAC 3 cut(s) 62, 278, 512
AfiI CCNNNNNNNGG 2 cut(s) 640, 704
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 3 cut(s) 517, 556, 662
AjiI CACGTC 1 cut(s) 286
AjnI CCWGG 1 cut(s) 492
AloI GAACNNNNNNTCC 2 cut(s) 443, 475
AluBI AGCT 6 cut(s) 269, 304, 366, 391, 478, 599
AluI AGCT 6 cut(s) 269, 304, 366, 391, 478, 599
AlwI GGATC 3 cut(s) 242, 608, 651
AoxI GGCC 6 cut(s) 92, 96, 122, 141, 201, 602
ApeKI GCWGC 2 cut(s) 14, 17
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
Asp700I GAANNNNTTC 2 cut(s) 160, 538
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 3 cut(s) 97, 127, 602
AsuHPI GGTGA 4 cut(s) 353, 361, 457, 740
AvaII GGWCC 1 cut(s) 127
BanI GGYRCC 2 cut(s) 7, 322
BanII GRGCYC 1 cut(s) 116
BauI CACGAG 1 cut(s) 272
BbvI GCAGC 1 cut(s) 4
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 494
BciVI GTATCC 1 cut(s) 462
BfaI CTAG 2 cut(s) 360, 593
BfoI RGCGCY 1 cut(s) 326
BfuAI ACCTGC 1 cut(s) 366
BfuI GTATCC 1 cut(s) 462
BisI GCNGC 2 cut(s) 15, 18
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 2 cut(s) 16, 19
BmcAI AGTACT 1 cut(s) 512
Bme1390I CCNGG 1 cut(s) 494
Bme18I GGWCC 1 cut(s) 127
BmgBI CACGTC 1 cut(s) 286
BmgT120I GGNCC 3 cut(s) 97, 127, 602
BmiI GGNNCC 2 cut(s) 9, 324
BmrFI CCNGG 1 cut(s) 494
BmrI ACTGGG 1 cut(s) 491
BmuI ACTGGG 1 cut(s) 491
BpmI CTGGAG 1 cut(s) 494
Bpu1102I GCTNAGC 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 323
BsaJI CCNNGG 4 cut(s) 238, 395, 493, 703
BsaWI WCCGGW 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 679, 709
Bsc4I CCNNNNNNNGG 2 cut(s) 640, 704
Bse118I RCCGGY 3 cut(s) 4, 94, 371
Bse1I ACTGG 2 cut(s) 477, 486
Bse3DI GCAATG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 494
BseDI CCNNGG 4 cut(s) 238, 395, 493, 703
BseGI GGATG 1 cut(s) 679
BseLI CCNNNNNNNGG 2 cut(s) 640, 704
BseMI GCAATG 1 cut(s) 355
BseMII CTCAG 4 cut(s) 12, 166, 341, 479
BseNI ACTGG 2 cut(s) 477, 486
BseXI GCAGC 1 cut(s) 4
BseYI CCCAGC 1 cut(s) 599
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 6 cut(s) 94, 98, 124, 143, 203, 604
BshNI GGYRCC 2 cut(s) 7, 322
BsiSI CCGG 6 cut(s) 5, 95, 125, 140, 251, 372
BslFI GGGAC 2 cut(s) 498, 669
BslI CCNNNNNNNGG 2 cut(s) 640, 704
BsmFI GGGAC 2 cut(s) 498, 669
BsnI GGCC 6 cut(s) 94, 98, 124, 143, 203, 604
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 4 cut(s) 247, 543, 613, 643
Bsp1720I GCTNAGC 1 cut(s) 21
Bsp68I TCGCGA 1 cut(s) 176
BspANI GGCC 6 cut(s) 94, 98, 124, 143, 203, 604
BspCNI CTCAG 4 cut(s) 13, 165, 340, 480
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 2 cut(s) 9, 324
BspMI ACCTGC 1 cut(s) 366
BspPI GGATC 3 cut(s) 242, 608, 651
BspT107I GGYRCC 2 cut(s) 7, 322
BsrDI GCAATG 1 cut(s) 355
BsrFI RCCGGY 3 cut(s) 4, 94, 371
BsrI ACTGG 2 cut(s) 477, 486
BssAI RCCGGY 3 cut(s) 4, 94, 371
BssECI CCNNGG 4 cut(s) 238, 395, 493, 703
BssMI GATC 4 cut(s) 247, 543, 613, 643
BssNI GRCGYC 1 cut(s) 323
BssSI CACGAG 1 cut(s) 272
BssT1I CCWWGG 1 cut(s) 703
Bst2BI CACGAG 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 2 cut(s) 611, 691
BstACI GRCGYC 1 cut(s) 323
BstC8I GCNNGC 3 cut(s) 12, 96, 205
BstDEI CTNAG 4 cut(s) 21, 152, 327, 488
BstDSI CCRYGG 2 cut(s) 238, 395
BstENI CCTNNNNNAGG 1 cut(s) 638
BstF5I GGATG 1 cut(s) 679
BstFNI CGCG 1 cut(s) 176
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 4 cut(s) 250, 546, 616, 646
BstMBI GATC 4 cut(s) 247, 543, 613, 643
BstMWI GCNNNNNNNGC 3 cut(s) 173, 322, 372
BstNI CCWGG 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 492
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 4
BsuI GTATCC 1 cut(s) 462
BsuRI GGCC 6 cut(s) 94, 98, 124, 143, 203, 604
BtgI CCRYGG 2 cut(s) 238, 395
BtgZI GCGATG 1 cut(s) 58
BtrI CACGTC 1 cut(s) 286
BtsCI GGATG 1 cut(s) 679
BtsIMutI CAGTG 1 cut(s) 607
BtuMI TCGCGA 1 cut(s) 176
BveI ACCTGC 1 cut(s) 366
Cac8I GCNNGC 3 cut(s) 12, 96, 205
CfoI GCGC 1 cut(s) 325
Cfr10I RCCGGY 3 cut(s) 4, 94, 371
Cfr13I GGNCC 3 cut(s) 97, 127, 602
Csp6I GTAC 3 cut(s) 61, 277, 511
CviAII CATG 3 cut(s) 101, 215, 280
CviQI GTAC 3 cut(s) 61, 277, 511
DdeI CTNAG 4 cut(s) 21, 152, 327, 488
DinI GGCGCC 1 cut(s) 324
DpnI GATC 4 cut(s) 249, 545, 615, 645
DpnII GATC 4 cut(s) 247, 543, 613, 643
DrdI GACNNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 50
EaeI YGGCCR 2 cut(s) 92, 141
Eco130I CCWWGG 1 cut(s) 703
Eco147I AGGCCT 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 127
EcoNI CCTNNNNNAGG 1 cut(s) 638
EcoRII CCWGG 1 cut(s) 492
EcoT14I CCWWGG 1 cut(s) 703
EcoT38I GRGCYC 1 cut(s) 116
EgeI GGCGCC 1 cut(s) 324
EheI GGCGCC 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 703
FaeI CATG 3 cut(s) 104, 218, 283
FaiI YATR 6 cut(s) 89, 91, 102, 216, 281, 740
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FaqI GGGAC 2 cut(s) 498, 669
FatI CATG 3 cut(s) 100, 214, 279
FauNDI CATATG 1 cut(s) 89
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 15, 18
FokI GGATG 1 cut(s) 686
FriOI GRGCYC 1 cut(s) 116
FseI GGCCGGCC 1 cut(s) 98
Fsp4HI GCNGC 2 cut(s) 15, 18
FspBI CTAG 2 cut(s) 360, 593
GlaI GCGC 1 cut(s) 324
GluI GCNGC 2 cut(s) 15, 18
GsaI CCCAGC 1 cut(s) 603
GsuI CTGGAG 1 cut(s) 494
HaeII RGCGCY 1 cut(s) 326
HaeIII GGCC 6 cut(s) 94, 98, 124, 143, 203, 604
HapII CCGG 6 cut(s) 5, 95, 125, 140, 251, 372
HhaI GCGC 1 cut(s) 325
Hin1I GRCGYC 1 cut(s) 323
Hin1II CATG 3 cut(s) 104, 218, 283
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HincII GTYRAC 2 cut(s) 196, 721
HindII GTYRAC 2 cut(s) 196, 721
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 4 cut(s) 44, 161, 184, 219
HpaII CCGG 6 cut(s) 5, 95, 125, 140, 251, 372
HphI GGTGA 4 cut(s) 353, 361, 457, 740
Hpy166II GTNNAC 3 cut(s) 196, 235, 721
Hpy188I TCNGA 3 cut(s) 155, 310, 330
Hpy188III TCNNGA 4 cut(s) 175, 272, 418, 641
Hpy8I GTNNAC 3 cut(s) 196, 235, 721
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 3 cut(s) 140, 524, 644
HpyCH4III ACNGT 2 cut(s) 611, 691
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 322, 372
HpyF3I CTNAG 4 cut(s) 21, 152, 327, 488
HpySE526I ACGT 1 cut(s) 285
Hsp92I GRCGYC 1 cut(s) 323
Hsp92II CATG 3 cut(s) 104, 218, 283
HspAI GCGC 1 cut(s) 323
KasI GGCGCC 1 cut(s) 322
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
Kzo9I GATC 4 cut(s) 247, 543, 613, 643
LmnI GCTCC 3 cut(s) 142, 475, 596
Lsp1109I GCAGC 1 cut(s) 4
MaeI CTAG 2 cut(s) 360, 593
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 1 cut(s) 691
MalI GATC 4 cut(s) 249, 545, 615, 645
MboI GATC 4 cut(s) 247, 543, 613, 643
MboII GAAGA 2 cut(s) 214, 346
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 1 cut(s) 538
Mly113I GGCGCC 1 cut(s) 323
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 7 cut(s) 161, 193, 236, 324, 336, 436, 615
MroNI GCCGGC 1 cut(s) 94
MroXI GAANNNNTTC 2 cut(s) 160, 538
MseI TTAA 3 cut(s) 381, 587, 748
MslI CAYNNNNRTG 1 cut(s) 284
MspI CCGG 6 cut(s) 5, 95, 125, 140, 251, 372
MspR9I CCNGG 1 cut(s) 494
MvaI CCWGG 1 cut(s) 494
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 3 cut(s) 173, 322, 372
NaeI GCCGGC 1 cut(s) 96
NarI GGCGCC 1 cut(s) 323
NdeI CATATG 1 cut(s) 89
NdeII GATC 4 cut(s) 247, 543, 613, 643
NgoMIV GCCGGC 1 cut(s) 94
NlaIII CATG 3 cut(s) 104, 218, 283
NlaIV GGNNCC 2 cut(s) 9, 324
NmeAIII GCCGAG 1 cut(s) 135
NruI TCGCGA 1 cut(s) 176
PceI AGGCCT 1 cut(s) 203
PdiI GCCGGC 1 cut(s) 96
PdmI GAANNNNTTC 2 cut(s) 160, 538
PfeI GAWTC 3 cut(s) 161, 184, 219
PkrI GCNGC 2 cut(s) 16, 19
PleI GAGTC 1 cut(s) 38
PluTI GGCGCC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 492
PspFI CCCAGC 1 cut(s) 599
PspGI CCWGG 1 cut(s) 492
PspN4I GGNNCC 2 cut(s) 9, 324
PspPI GGNCC 3 cut(s) 97, 127, 602
RigI GGCCGGCC 1 cut(s) 98
RruI TCGCGA 1 cut(s) 176
RsaI GTAC 3 cut(s) 62, 278, 512
RsaNI GTAC 3 cut(s) 61, 277, 511
RseI CAYNNNNRTG 1 cut(s) 284
SalI GTCGAC 1 cut(s) 194
SaqAI TTAA 3 cut(s) 381, 587, 748
SatI GCNGC 2 cut(s) 15, 18
Sau3AI GATC 4 cut(s) 247, 543, 613, 643
Sau96I GGNCC 3 cut(s) 97, 127, 602
ScaI AGTACT 1 cut(s) 512
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 494
SduI GDGCHC 1 cut(s) 116
SfoI GGCGCC 1 cut(s) 324
SinI GGWCC 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 284
Sse9I AATT 1 cut(s) 538
SseBI AGGCCT 1 cut(s) 203
SspDI GGCGCC 1 cut(s) 322
SspMI CTAG 2 cut(s) 360, 593
StuI AGGCCT 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 703
TaaI ACNGT 2 cut(s) 611, 691
TaiI ACGT 1 cut(s) 288
TaqI TCGA 5 cut(s) 42, 147, 182, 195, 542
TasI AATT 1 cut(s) 538
TatI WGTACW 2 cut(s) 276, 510
TfiI GAWTC 3 cut(s) 161, 184, 219
Tru1I TTAA 3 cut(s) 381, 587, 748
Tru9I TTAA 3 cut(s) 381, 587, 748
TscAI CASTG 1 cut(s) 614
TseI GCWGC 2 cut(s) 14, 17
TspDTI ATGAA 4 cut(s) 76, 314, 464, 626
TspGWI ACGGA 2 cut(s) 255, 384
TspRI CASTG 1 cut(s) 614
VpaK11BI GGWCC 1 cut(s) 127
XagI CCTNNNNNAGG 1 cut(s) 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 195
XmnI GAANNNNTTC 2 cut(s) 160, 538
XspI CTAG 2 cut(s) 360, 593
ZrmI AGTACT 1 cut(s) 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.