RchiOBHm_Chr1g0353771

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
46942911 .. 46944599
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57939

Sequence Viewer

Length: 1128 bp
ATGTTGGCCCTGCCGGTGCCTGCTCCTCCCGACCAAACCCCTGTGATTTTCGACTCCCAAGTCATTCAGTATCAATCCAACATCCCTTACCAGTTCATATGGCCAGACCACGAGAAGCCGATCCCCAACCGGCCGGACATTCTCGCTCCGGCCATCGACCTGAACGGCTTCCTCAGCGGCGACCCTGCCATCGTCGCGAACTCAATTCGTTTAGTCGACGAGGCCTGCAAAAAGCATGGATTCTTCCTCATTGTAAACCATGGAGTTGATCCGGAGCTCCTTGCGAAAGCTCACGAGTACATGGACGTGTTCTTTGAGATGAAGCTCTCGGAGAAGAATAGGGCTCAGAGGAAGGTTGGTGAGAGCTACGGCTATGCTAGTAGCTTCACCGGCAGGTTTAACTCCAACCTTCCATGGAAAGAAACACTTTCTTTTAGGTACTCTGCTGAGAGCCAGAGCTCAACAGTCGTCAAGGACTACTTTGTGAATACGTTGGGTGAAGATTTCAGAGAAATCGGGAAGTTCTACCAAGAGTACTGTGAAGTGATGAACAAACTATCCAAGGGCATACTGGAGCTATTGGGACTAAGCCTGCGAGTTGGCCAGTACTTCAAAGAGTTCTACGAAGGAAACGATTCGATCATGAGGTTGAACTACTATCCAATGTGCCAAAAACCAGATTTAACACTGGGAACTGGGCCTCACTGTGATCCCACTTCCTTGACAATCCTTCATCAGGATCAAGTAGGGGGCCTTGAAGTGTTTTTCGATGAGAAGTGGCACACCGTTACTCCTGTCCTTGGTTCTTTCGTTGTCAACATTGGTGATACTTTTATGGCTTTGAGCAATGGGATTTACAAAAGCTGCTTGCACAGGGCTGTGGTAAATAACAAAGCTGTAAGGAAATCTCTTACTTTCTTTCTGAATTCAAACAAGGACAGAGTAGTGACTCCACCAGCAAGTTTGATTAGTGCTGATAACCAGAGGTTGTACCCGGACTTTACTTGGCCTGCTCTACTAGAGTTTACCCAGAAACAGTATAGGGCTGACAGGAGCACCATTGATGCTTTCTTGGCCTGGAGTAGTAAGCAGAAGGGTGGAGAGGAAAAGAAAGACCAAGGAAACTAG

Protein Analysis

375

Amino Acids

42.53

Weight (kDa)

5.95

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 50 - 153 6.1e-21 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 212 - 309 4.3e-34 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis pycom02g16160
rosa_chinensis RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 59
Acc36I ACCTGC 1 cut(s) 384
AccB1I GGYRCC 1 cut(s) 16
AccI GTMKAC 1 cut(s) 216
AccII CGCG 1 cut(s) 197
AccIII TCCGGA 1 cut(s) 271
AciI CCGC 1 cut(s) 177
AclWI GGATC 4 cut(s) 115, 263, 704, 747
AcoI YGGCCR 4 cut(s) 101, 131, 150, 601
AcsI RAATTY 1 cut(s) 925
AfaI GTAC 5 cut(s) 299, 440, 536, 608, 992
AfiI CCNNNNNNNGG 2 cut(s) 736, 800
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 4 cut(s) 613, 652, 758, 930
AjiI CACGTC 1 cut(s) 307
AjnI CCWGG 1 cut(s) 1076
AloI GAACNNNNNNTCC 2 cut(s) 542, 574
AluBI AGCT 9 cut(s) 277, 290, 325, 366, 384, 459, 577, 864, 896
AluI AGCT 9 cut(s) 277, 290, 325, 366, 384, 459, 577, 864, 896
Alw21I GWGCWC 3 cut(s) 279, 461, 1058
AlwI GGATC 4 cut(s) 115, 263, 704, 747
Aor13HI TCCGGA 1 cut(s) 271
ApeKI GCWGC 1 cut(s) 864
ApoI RAATTY 1 cut(s) 925
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
Asp700I GAANNNNTTC 2 cut(s) 167, 634
AspS9I GGNCC 3 cut(s) 7, 698, 751
AsuC2I CCSGG 1 cut(s) 995
AsuHPI GGTGA 4 cut(s) 371, 379, 509, 836
BalI TGGCCA 2 cut(s) 103, 603
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 3 cut(s) 279, 346, 461
BauI CACGAG 2 cut(s) 110, 293
Bbv12I GWGCWC 3 cut(s) 279, 461, 1058
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 851
BccI CCATC 2 cut(s) 161, 197
BceAI ACGGC 2 cut(s) 181, 385
BciT130I CCWGG 1 cut(s) 1078
BcnI CCSGG 1 cut(s) 995
BfaI CTAG 3 cut(s) 378, 1019, 1126
BfuAI ACCTGC 1 cut(s) 384
BisI GCNGC 2 cut(s) 178, 865
BlsI GCNGC 2 cut(s) 179, 866
BmcAI AGTACT 2 cut(s) 536, 608
Bme1390I CCNGG 2 cut(s) 995, 1078
BmgBI CACGTC 1 cut(s) 307
BmgT120I GGNCC 3 cut(s) 7, 698, 751
BmiI GGNNCC 2 cut(s) 18, 752
BmrFI CCNGG 2 cut(s) 995, 1078
BmrI ACTGGG 2 cut(s) 698, 705
BmsI GCATC 1 cut(s) 1054
BmuI ACTGGG 2 cut(s) 698, 705
BpmI CTGGAG 2 cut(s) 593, 1099
Bpu10I CCTNAGC 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 995
BsaJI CCNNGG 5 cut(s) 259, 413, 561, 799, 1117
BsaWI WCCGGW 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 775, 805
Bsc4I CCNNNNNNNGG 2 cut(s) 736, 800
Bse118I RCCGGY 3 cut(s) 13, 129, 389
Bse1I ACTGG 5 cut(s) 91, 576, 604, 693, 700
Bse3DI GCAATG 1 cut(s) 853
BseAI TCCGGA 1 cut(s) 271
BseBI CCWGG 1 cut(s) 1078
BseDI CCNNGG 5 cut(s) 259, 413, 561, 799, 1117
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 2 cut(s) 736, 800
BseMI GCAATG 1 cut(s) 853
BseMII CTCAG 3 cut(s) 187, 359, 438
BseNI ACTGG 5 cut(s) 91, 576, 604, 693, 700
BseRI GAGGAG 1 cut(s) 15
BseX3I CGGCCG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 851
Bsh1236I CGCG 1 cut(s) 197
Bsh1285I CGRYCG 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 16
BsiEI CGRYCG 1 cut(s) 134
BsiHKAI GWGCWC 3 cut(s) 279, 461, 1058
BsiSI CCGG 7 cut(s) 14, 130, 134, 149, 272, 390, 995
BslFI GGGAC 1 cut(s) 597
BslI CCNNNNNNNGG 2 cut(s) 736, 800
BsmFI GGGAC 1 cut(s) 597
Bsp1286I GDGCHC 4 cut(s) 279, 346, 461, 1058
Bsp13I TCCGGA 1 cut(s) 271
Bsp143I GATC 5 cut(s) 120, 268, 639, 709, 739
Bsp19I CCATGG 2 cut(s) 259, 413
Bsp68I TCGCGA 1 cut(s) 197
BspACI CCGC 1 cut(s) 177
BspCNI CTCAG 3 cut(s) 186, 358, 439
BspEI TCCGGA 1 cut(s) 271
BspFNI CGCG 1 cut(s) 197
BspHI TCATGA 1 cut(s) 642
BspLI GGNNCC 2 cut(s) 18, 752
BspMI ACCTGC 1 cut(s) 384
BspPI GGATC 4 cut(s) 115, 263, 704, 747
BspT107I GGYRCC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 853
BsrFI RCCGGY 3 cut(s) 13, 129, 389
BsrI ACTGG 5 cut(s) 91, 576, 604, 693, 700
BssAI RCCGGY 3 cut(s) 13, 129, 389
BssECI CCNNGG 5 cut(s) 259, 413, 561, 799, 1117
BssMI GATC 5 cut(s) 120, 268, 639, 709, 739
BssSI CACGAG 2 cut(s) 110, 293
BssT1I CCWWGG 5 cut(s) 259, 413, 561, 799, 1117
Bst2BI CACGAG 2 cut(s) 110, 293
Bst2UI CCWGG 1 cut(s) 1078
Bst4CI ACNGT 5 cut(s) 466, 539, 707, 787, 1038
BstC8I GCNNGC 5 cut(s) 21, 226, 593, 869, 1011
BstDEI CTNAG 4 cut(s) 173, 345, 447, 587
BstDSI CCRYGG 2 cut(s) 259, 413
BstENI CCTNNNNNAGG 1 cut(s) 734
BstF5I GGATG 1 cut(s) 81
BstFNI CGCG 1 cut(s) 197
BstKTI GATC 5 cut(s) 123, 271, 642, 712, 742
BstMBI GATC 5 cut(s) 120, 268, 639, 709, 739
BstMCI CGRYCG 1 cut(s) 134
BstMWI GCNNNNNNNGC 4 cut(s) 174, 194, 390, 1073
BstNI CCWGG 1 cut(s) 1078
BstSCI CCNGG 2 cut(s) 993, 1076
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 851
BstZI CGGCCG 1 cut(s) 131
BtgI CCRYGG 2 cut(s) 259, 413
BtrI CACGTC 1 cut(s) 307
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 2 cut(s) 686, 703
BtuMI TCGCGA 1 cut(s) 197
BveI ACCTGC 1 cut(s) 384
Cac8I GCNNGC 5 cut(s) 21, 226, 593, 869, 1011
CciI TCATGA 1 cut(s) 642
Cfr10I RCCGGY 3 cut(s) 13, 129, 389
Cfr13I GGNCC 3 cut(s) 7, 698, 751
Csp6I GTAC 5 cut(s) 298, 439, 535, 607, 991
CviAII CATG 5 cut(s) 236, 260, 301, 414, 643
CviQI GTAC 5 cut(s) 298, 439, 535, 607, 991
DdeI CTNAG 4 cut(s) 173, 345, 447, 587
DpnI GATC 5 cut(s) 122, 270, 641, 711, 741
DpnII GATC 5 cut(s) 120, 268, 639, 709, 739
DrdI GACNNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 59
EaeI YGGCCR 4 cut(s) 101, 131, 150, 601
EagI CGGCCG 1 cut(s) 131
Ecl136II GAGCTC 2 cut(s) 277, 459
EclXI CGGCCG 1 cut(s) 131
Eco130I CCWWGG 5 cut(s) 259, 413, 561, 799, 1117
Eco147I AGGCCT 1 cut(s) 224
Eco24I GRGCYC 3 cut(s) 279, 346, 461
Eco52I CGGCCG 1 cut(s) 131
Eco53kI GAGCTC 2 cut(s) 277, 459
EcoICRI GAGCTC 2 cut(s) 277, 459
EcoNI CCTNNNNNAGG 1 cut(s) 734
EcoO109I RGGNCCY 1 cut(s) 751
EcoRI GAATTC 1 cut(s) 925
EcoRII CCWGG 1 cut(s) 1076
EcoT14I CCWWGG 5 cut(s) 259, 413, 561, 799, 1117
EcoT38I GRGCYC 3 cut(s) 279, 346, 461
ErhI CCWWGG 5 cut(s) 259, 413, 561, 799, 1117
FaeI CATG 5 cut(s) 239, 263, 304, 417, 646
FalI AAGNNNNNCTT 4 cut(s) 411, 443, 464, 496
FaqI GGGAC 1 cut(s) 597
FatI CATG 5 cut(s) 235, 259, 300, 413, 642
FauNDI CATATG 1 cut(s) 98
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 178, 865
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 3 cut(s) 279, 346, 461
Fsp4HI GCNGC 2 cut(s) 178, 865
FspBI CTAG 3 cut(s) 378, 1019, 1126
GluI GCNGC 2 cut(s) 178, 865
GsuI CTGGAG 2 cut(s) 593, 1099
HapII CCGG 7 cut(s) 14, 130, 134, 149, 272, 390, 995
Hin1II CATG 5 cut(s) 239, 263, 304, 417, 646
HincII GTYRAC 2 cut(s) 217, 817
HindII GTYRAC 2 cut(s) 217, 817
HinfI GANTC 4 cut(s) 53, 240, 635, 949
HpaII CCGG 7 cut(s) 14, 130, 134, 149, 272, 390, 995
HphI GGTGA 4 cut(s) 371, 379, 509, 836
Hpy166II GTNNAC 4 cut(s) 217, 256, 817, 1026
Hpy188I TCNGA 4 cut(s) 331, 348, 509, 924
Hpy188III TCNNGA 7 cut(s) 29, 196, 272, 293, 517, 643, 737
Hpy8I GTNNAC 4 cut(s) 217, 256, 817, 1026
Hpy99I CGWCG 2 cut(s) 197, 221
HpyAV CCTTC 5 cut(s) 346, 419, 620, 740, 1087
HpyCH4III ACNGT 5 cut(s) 466, 539, 707, 787, 1038
HpyCH4IV ACGT 2 cut(s) 306, 491
HpyCH4V TGCA 2 cut(s) 228, 871
HpyF10VI GCNNNNNNNGC 4 cut(s) 174, 194, 390, 1073
HpyF3I CTNAG 4 cut(s) 173, 345, 447, 587
HpySE526I ACGT 2 cut(s) 306, 491
Hsp92II CATG 5 cut(s) 239, 263, 304, 417, 646
Kpn2I TCCGGA 1 cut(s) 271
Kzo9I GATC 5 cut(s) 120, 268, 639, 709, 739
LmnI GCTCC 6 cut(s) 28, 151, 274, 282, 574, 1053
Lsp1109I GCAGC 1 cut(s) 851
LweI GCATC 1 cut(s) 1054
MaeI CTAG 3 cut(s) 378, 1019, 1126
MaeII ACGT 2 cut(s) 306, 491
MaeIII GTNAC 2 cut(s) 787, 946
MalI GATC 5 cut(s) 122, 270, 641, 711, 741
MboI GATC 5 cut(s) 120, 268, 639, 709, 739
MboII GAAGA 3 cut(s) 235, 346, 512
MhlI GDGCHC 4 cut(s) 279, 346, 461, 1058
MlsI TGGCCA 2 cut(s) 103, 603
MluCI AATT 2 cut(s) 204, 925
MluNI TGGCCA 2 cut(s) 103, 603
MlyI GAGTC 2 cut(s) 47, 943
MmeI TCCRAC 2 cut(s) 102, 429
MnlI CCTC 9 cut(s) 36, 182, 214, 257, 342, 639, 711, 978, 1096
Mox20I TGGCCA 2 cut(s) 103, 603
MroI TCCGGA 1 cut(s) 271
MroXI GAANNNNTTC 2 cut(s) 167, 634
MscI TGGCCA 2 cut(s) 103, 603
MseI TTAA 2 cut(s) 399, 683
MslI CAYNNNNRTG 1 cut(s) 305
Msp20I TGGCCA 2 cut(s) 103, 603
MspA1I CMGCKG 1 cut(s) 177
MspI CCGG 7 cut(s) 14, 130, 134, 149, 272, 390, 995
MspR9I CCNGG 2 cut(s) 995, 1078
MvaI CCWGG 1 cut(s) 1078
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 4 cut(s) 174, 194, 390, 1073
NciI CCSGG 1 cut(s) 995
NcoI CCATGG 2 cut(s) 259, 413
NdeI CATATG 1 cut(s) 98
NdeII GATC 5 cut(s) 120, 268, 639, 709, 739
NlaIII CATG 5 cut(s) 239, 263, 304, 417, 646
NlaIV GGNNCC 2 cut(s) 18, 752
NmuCI GTSAC 1 cut(s) 946
NruI TCGCGA 1 cut(s) 197
PagI TCATGA 1 cut(s) 642
PceI AGGCCT 1 cut(s) 224
PcsI WCGNNNNNNNCGW 1 cut(s) 630
PdmI GAANNNNTTC 2 cut(s) 167, 634
PfeI GAWTC 2 cut(s) 240, 635
PkrI GCNGC 2 cut(s) 179, 866
PleI GAGTC 2 cut(s) 47, 943
PpsI GAGTC 2 cut(s) 47, 943
Psp124BI GAGCTC 2 cut(s) 279, 461
Psp6I CCWGG 1 cut(s) 1076
PspGI CCWGG 1 cut(s) 1076
PspN4I GGNNCC 2 cut(s) 18, 752
PspPI GGNCC 3 cut(s) 7, 698, 751
RruI TCGCGA 1 cut(s) 197
RsaI GTAC 5 cut(s) 299, 440, 536, 608, 992
RsaNI GTAC 5 cut(s) 298, 439, 535, 607, 991
RseI CAYNNNNRTG 1 cut(s) 305
SacI GAGCTC 2 cut(s) 279, 461
SalI GTCGAC 1 cut(s) 215
SaqAI TTAA 2 cut(s) 399, 683
SatI GCNGC 2 cut(s) 178, 865
Sau3AI GATC 5 cut(s) 120, 268, 639, 709, 739
Sau96I GGNCC 3 cut(s) 7, 698, 751
ScaI AGTACT 2 cut(s) 536, 608
SchI GAGTC 2 cut(s) 47, 943
ScrFI CCNGG 2 cut(s) 995, 1078
SduI GDGCHC 4 cut(s) 279, 346, 461, 1058
SfaNI GCATC 1 cut(s) 1054
SmiMI CAYNNNNRTG 1 cut(s) 305
Sse9I AATT 2 cut(s) 204, 925
SseBI AGGCCT 1 cut(s) 224
SsiI CCGC 1 cut(s) 177
SspMI CTAG 3 cut(s) 378, 1019, 1126
SstI GAGCTC 2 cut(s) 279, 461
StuI AGGCCT 1 cut(s) 224
StyD4I CCNGG 2 cut(s) 993, 1076
StyI CCWWGG 5 cut(s) 259, 413, 561, 799, 1117
TaaI ACNGT 5 cut(s) 466, 539, 707, 787, 1038
TaiI ACGT 2 cut(s) 309, 494
TaqI TCGA 5 cut(s) 51, 156, 216, 638, 768
TasI AATT 2 cut(s) 204, 925
TatI WGTACW 3 cut(s) 297, 534, 606
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 2 cut(s) 240, 635
Tru1I TTAA 2 cut(s) 399, 683
Tru9I TTAA 2 cut(s) 399, 683
TscAI CASTG 2 cut(s) 693, 710
TseFI GTSAC 1 cut(s) 946
TseI GCWGC 1 cut(s) 864
Tsp45I GTSAC 1 cut(s) 946
TspDTI ATGAA 4 cut(s) 85, 335, 563, 722
TspRI CASTG 2 cut(s) 693, 710
XagI CCTNNNNNAGG 1 cut(s) 734
XapI RAATTY 1 cut(s) 925
XcmI CCANNNNNNNNNTGG 1 cut(s) 568
XmiI GTMKAC 1 cut(s) 216
XmnI GAANNNNTTC 2 cut(s) 167, 634
XspI CTAG 3 cut(s) 378, 1019, 1126
ZrmI AGTACT 2 cut(s) 536, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.