Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000462

Physical Location & Seq

Genomic Coordinates Forward (+)

44872856 .. 44874912

Gene Structure 2057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57736

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCCGGAGTAGTAGTGCCGGACCACGAGAAGCCGAGCCCCAACCGGCAGGACCTTCTCGCTCCAGCCATCGACCTCAACGGCTTCCTCAGCGGCGATCCTACCATCCCCGCGAACTCGATTCGTTCGGTCTACGAGACCTGCAAGAAGCATGGATTCTTCCTCATCGTGAACCACGGAGTTGATCGGGAGCTGATTGCGAAAGCTCACGAGTACATGGACCTGTTCTTTAAGATGAAGCTCTCGGAGAAGCAAAGGGCTCAGAGGAAGAGCTCAACATTCGTCAAGGACTACTTTGTGAATGTTTTGGGTGAAGATTTCAAAGAAATCGGGAAGTTCTACCAAGAATACTCGGAAGTGATGAACAAACTATCCAATGGGATACTGGAGCTACTGGGACTGAGCCTGGGAGTTGGGCAGGAGTGCTTCAAAGAGTTCTACGGAGGAAACGATTCGATCATGAGTGATCCCACTTCCTTGACAATCCTTCATCAGGATCAAGTAGAAGGCCTTGAAGTGTTTTTCGATGAGAAGTGGCACACCGTTACTCCTGTCCTTGGTTCTTTCGTTATTAACATTGGTGATACTTTTATGGCTCTGTGCAATGGGATTTACAAGAGCTGCTTCCACAGGGCTGTGGTAAACAACAAAACTGTAAGGAAATCTCTTGCTTTCTTTCTCAATCCAAACAAGGACAGAGTAGTGACTCCACCAGCAAGTTTGATCAGGGCTGATAGCCCGAGGTTGTACCCAAACTTTACTTGGCCTACTCTGCTAGAGTTTACCCAGAAACATTACAGGGCTGACAGGAGCACCATTGATGCCTTCTCGGACTGGATTAATAAGCAAAAGGGTGGAGAGGAAAAGAAAGACCGAAGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010228 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045544 GO:0046394 GO:0048366 GO:0048367 GO:0048572 GO:0048573 GO:0048575 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

294

Amino Acids

33.49

Weight (kDa)

7.09

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	22 - 93	3.5e-14	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	155 - 229	4.4e-21	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca	FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica	MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica	Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis	pycom02g16160
rosa_chinensis	RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata	RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora	Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa	Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha	Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana	Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	149
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	1 cut(s)	113
AciI	CCGC	2 cut(s)	93, 111
AclWI	GGATC	3 cut(s)	92, 461, 504
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	215, 749
AfiI	CCNNNNNNNGG	2 cut(s)	493, 557
AgsI	TTSAA	3 cut(s)	322, 430, 515
AjnI	CCWGG	1 cut(s)	405
AloI	GAACNNNNNNTCC	2 cut(s)	356, 388
AluBI	AGCT	6 cut(s)	193, 206, 241, 273, 391, 621
AluI	AGCT	6 cut(s)	193, 206, 241, 273, 391, 621
Alw21I	GWGCWC	2 cut(s)	275, 815
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	3 cut(s)	92, 461, 504
Ama87I	CYCGRG	1 cut(s)	739
AoxI	GGCC	3 cut(s)	3, 508, 764
ApeKI	GCWGC	1 cut(s)	621
AseI	ATTAAT	1 cut(s)	840
Asp700I	GAANNNNTTC	1 cut(s)	451
AspS9I	GGNCC	3 cut(s)	22, 52, 220
AsuHPI	GGTGA	2 cut(s)	323, 593
AvaI	CYCGRG	1 cut(s)	739
AvaII	GGWCC	3 cut(s)	22, 52, 220
BanII	GRGCYC	3 cut(s)	41, 262, 275
BauI	CACGAG	2 cut(s)	26, 209
Bbv12I	GWGCWC	2 cut(s)	275, 815
BbvCI	CCTCAGC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	608
BccI	CCATC	2 cut(s)	77, 113
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	407
BciVI	GTATCC	1 cut(s)	375
BclI	TGATCA	1 cut(s)	723
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	2 cut(s)	776, 883
BfuAI	ACCTGC	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	375
BisI	GCNGC	2 cut(s)	94, 622
BlsI	GCNGC	2 cut(s)	95, 623
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	3 cut(s)	22, 52, 220
BmeT110I	CYCGRG	1 cut(s)	739
BmgT120I	GGNCC	3 cut(s)	22, 52, 220
BmrFI	CCNGG	1 cut(s)	407
BmrI	ACTGGG	1 cut(s)	404
BmsI	GCATC	1 cut(s)	811
BmuI	ACTGGG	1 cut(s)	404
BpmI	CTGGAG	2 cut(s)	48, 407
Bpu10I	CCTNAGC	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	4 cut(s)	175, 406, 556, 740
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 532, 562
Bsc4I	CCNNNNNNNGG	2 cut(s)	493, 557
Bse118I	RCCGGY	1 cut(s)	45
Bse1I	ACTGG	3 cut(s)	390, 399, 839
Bse3DI	GCAATG	1 cut(s)	610
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	4 cut(s)	175, 406, 556, 740
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	2 cut(s)	493, 557
BseMI	GCAATG	1 cut(s)	610
BseMII	CTCAG	3 cut(s)	103, 275, 392
BseNI	ACTGG	3 cut(s)	390, 399, 839
BseXI	GCAGC	1 cut(s)	608
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	3 cut(s)	5, 510, 766
BsiHKAI	GWGCWC	2 cut(s)	275, 815
BsiHKCI	CYCGRG	1 cut(s)	739
BsiSI	CCGG	3 cut(s)	6, 20, 46
BslFI	GGGAC	1 cut(s)	411
BslI	CCNNNNNNNGG	2 cut(s)	493, 557
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	411
BsnI	GGCC	3 cut(s)	5, 510, 766
Bso31I	GGTCTC	1 cut(s)	131
BsoBI	CYCGRG	1 cut(s)	739
Bsp1286I	GDGCHC	4 cut(s)	41, 262, 275, 815
Bsp143I	GATC	6 cut(s)	97, 184, 456, 466, 496, 723
BspACI	CCGC	2 cut(s)	93, 111
BspANI	GGCC	3 cut(s)	5, 510, 766
BspCNI	CTCAG	3 cut(s)	102, 274, 393
BspFNI	CGCG	1 cut(s)	113
BspHI	TCATGA	1 cut(s)	459
BspMI	ACCTGC	1 cut(s)	149
BspPI	GGATC	3 cut(s)	92, 461, 504
BspQI	GCTCTTC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	610
BsrFI	RCCGGY	1 cut(s)	45
BsrI	ACTGG	3 cut(s)	390, 399, 839
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	4 cut(s)	175, 406, 556, 740
BssMI	GATC	6 cut(s)	97, 184, 456, 466, 496, 723
BssSI	CACGAG	2 cut(s)	26, 209
BssT1I	CCWWGG	1 cut(s)	556
Bst2BI	CACGAG	2 cut(s)	26, 209
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	2 cut(s)	544, 655
Bst6I	CTCTTC	1 cut(s)	263
BstDEI	CTNAG	3 cut(s)	89, 261, 401
BstDSI	CCRYGG	1 cut(s)	175
BstENI	CCTNNNNNAGG	1 cut(s)	491
BstF5I	GGATG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	6 cut(s)	100, 187, 459, 469, 499, 726
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	6 cut(s)	97, 184, 456, 466, 496, 723
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 772
BstNI	CCWGG	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	405
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	608
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	3 cut(s)	5, 510, 766
BtgI	CCRYGG	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	149
CciI	TCATGA	1 cut(s)	459
Cfr10I	RCCGGY	1 cut(s)	45
Cfr13I	GGNCC	3 cut(s)	22, 52, 220
Csp6I	GTAC	2 cut(s)	214, 748
CviAII	CATG	3 cut(s)	152, 217, 460
CviQI	GTAC	2 cut(s)	214, 748
DdeI	CTNAG	3 cut(s)	89, 261, 401
DpnI	GATC	6 cut(s)	99, 186, 458, 468, 498, 725
DpnII	GATC	6 cut(s)	97, 184, 456, 466, 496, 723
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Ecl136II	GAGCTC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	556
Eco147I	AGGCCT	1 cut(s)	510
Eco24I	GRGCYC	3 cut(s)	41, 262, 275
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	3 cut(s)	22, 52, 220
Eco53kI	GAGCTC	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	739
EcoICRI	GAGCTC	1 cut(s)	273
EcoNI	CCTNNNNNAGG	1 cut(s)	491
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	556
EcoT38I	GRGCYC	3 cut(s)	41, 262, 275
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	3 cut(s)	155, 220, 463
FaiI	YATR	4 cut(s)	153, 218, 461, 593
FalI	AAGNNNNNCTT	4 cut(s)	278, 310, 608, 640
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	3 cut(s)	151, 216, 459
FauI	CCCGC	1 cut(s)	118
FbaI	TGATCA	1 cut(s)	723
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	2 cut(s)	94, 622
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	3 cut(s)	41, 262, 275
Fsp4HI	GCNGC	2 cut(s)	94, 622
FspBI	CTAG	2 cut(s)	776, 883
GluI	GCNGC	2 cut(s)	94, 622
GsuI	CTGGAG	2 cut(s)	48, 407
HaeIII	GGCC	3 cut(s)	5, 510, 766
HapII	CCGG	3 cut(s)	6, 20, 46
Hin1II	CATG	3 cut(s)	155, 220, 463
HinfI	GANTC	4 cut(s)	121, 156, 452, 706
HpaII	CCGG	3 cut(s)	6, 20, 46
HphI	GGTGA	2 cut(s)	323, 593
Hpy166II	GTNNAC	4 cut(s)	133, 172, 643, 783
Hpy188I	TCNGA	4 cut(s)	247, 264, 355, 832
Hpy188III	TCNNGA	6 cut(s)	169, 188, 209, 331, 460, 494
Hpy8I	GTNNAC	4 cut(s)	133, 172, 643, 783
HpyAV	CCTTC	4 cut(s)	65, 497, 500, 835
HpyCH4III	ACNGT	2 cut(s)	544, 655
HpyCH4V	TGCA	2 cut(s)	144, 603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 772
HpyF3I	CTNAG	3 cut(s)	89, 261, 401
Hsp92II	CATG	3 cut(s)	155, 220, 463
Ksp22I	TGATCA	1 cut(s)	723
Kzo9I	GATC	6 cut(s)	97, 184, 456, 466, 496, 723
LguI	GCTCTTC	1 cut(s)	263
LmnI	GCTCC	4 cut(s)	67, 190, 388, 810
Lsp1109I	GCAGC	1 cut(s)	608
LweI	GCATC	1 cut(s)	811
MaeI	CTAG	2 cut(s)	776, 883
MaeIII	GTNAC	2 cut(s)	544, 703
MalI	GATC	6 cut(s)	99, 186, 458, 468, 498, 725
MboI	GATC	6 cut(s)	97, 184, 456, 466, 496, 723
MboII	GAAGA	3 cut(s)	151, 280, 326
MhlI	GDGCHC	4 cut(s)	41, 262, 275, 815
MlyI	GAGTC	1 cut(s)	700
MnlI	CCTC	7 cut(s)	86, 98, 173, 258, 437, 735, 853
MroXI	GAANNNNTTC	1 cut(s)	451
MseI	TTAA	3 cut(s)	231, 573, 840
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	3 cut(s)	6, 20, 46
MspR9I	CCNGG	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	407
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	2 cut(s)	90, 772
NdeII	GATC	6 cut(s)	97, 184, 456, 466, 496, 723
NlaIII	CATG	3 cut(s)	155, 220, 463
NmeAIII	GCCGAG	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	703
PagI	TCATGA	1 cut(s)	459
PceI	AGGCCT	1 cut(s)	510
PciSI	GCTCTTC	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	447
PdmI	GAANNNNTTC	1 cut(s)	451
PfeI	GAWTC	3 cut(s)	121, 156, 452
PkrI	GCNGC	2 cut(s)	95, 623
PleI	GAGTC	1 cut(s)	700
PpsI	GAGTC	1 cut(s)	700
PpuMI	RGGWCCY	1 cut(s)	52
PshBI	ATTAAT	1 cut(s)	840
Psp124BI	GAGCTC	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspPI	GGNCC	3 cut(s)	22, 52, 220
PspPPI	RGGWCCY	1 cut(s)	52
RsaI	GTAC	2 cut(s)	215, 749
RsaNI	GTAC	2 cut(s)	214, 748
SacI	GAGCTC	1 cut(s)	275
SapI	GCTCTTC	1 cut(s)	263
SaqAI	TTAA	3 cut(s)	231, 573, 840
SatI	GCNGC	2 cut(s)	94, 622
Sau3AI	GATC	6 cut(s)	97, 184, 456, 466, 496, 723
Sau96I	GGNCC	3 cut(s)	22, 52, 220
SchI	GAGTC	1 cut(s)	700
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	4 cut(s)	41, 262, 275, 815
SfaNI	GCATC	1 cut(s)	811
SinI	GGWCC	3 cut(s)	22, 52, 220
SseBI	AGGCCT	1 cut(s)	510
SsiI	CCGC	2 cut(s)	93, 111
SspMI	CTAG	2 cut(s)	776, 883
SstI	GAGCTC	1 cut(s)	275
StuI	AGGCCT	1 cut(s)	510
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	2 cut(s)	544, 655
TaqI	TCGA	4 cut(s)	72, 119, 455, 525
TaqII	GACCGA	1 cut(s)	118
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	3 cut(s)	121, 156, 452
Tru1I	TTAA	3 cut(s)	231, 573, 840
Tru9I	TTAA	3 cut(s)	231, 573, 840
TseFI	GTSAC	1 cut(s)	703
TseI	GCWGC	1 cut(s)	621
Tsp45I	GTSAC	1 cut(s)	703
TspDTI	ATGAA	3 cut(s)	251, 377, 479
TspGWI	ACGGA	2 cut(s)	192, 456
VpaK11BI	GGWCC	3 cut(s)	22, 52, 220
VspI	ATTAAT	1 cut(s)	840
XagI	CCTNNNNNAGG	1 cut(s)	491
XcmI	CCANNNNNNNNNTGG	2 cut(s)	382, 759
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	451
XspI	CTAG	2 cut(s)	776, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.