Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000462

Physical Location & Seq

Genomic Coordinates Reverse (-)

28275407 .. 28277374

Gene Structure 1968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G286800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCAATTGAGTGCATGATCACAACAAGAAGAAGCACGCAATCCATGGCTCAACCCCCCTCCCTAAAAACAGAGCACAAACAAGATGACCAAAAACCATTAGTTTTTGATGCCTCAGTGCTCAGGTACCAGACAGAAATACCAAAACAGTTCATATGGCCTGATGAGGAAAAGCCCTGCGCAAACACCCCTGAGCTCCAAGTCCCTCTTATAGACTTGGGTGGTTTTCTCTCTGGAAACAAACAAGCTGCAACGAAAGCCTCCACAATTGTAGGCGAGGCCTGCCAAAAGCATGGCTTTTTCCTTGTTGTGAATCATGGTGTTGACAATCAACTCATAGCCGATGCTCATCGCTACATGGATGATTTTTTCGGGTTGCCTCTGTCTGAAAAACAGAGAGCGCAGAGGCTACTAGGGGAGCACTGTGGCTATGCCAGCAGCTTCACTGGTAGATTCTCGTCAAAACTTCCATGGAAGGAGACTCTTTCTTTTCGCTACTCTGCAGACAAAAGCTCATCCAGTATCGTCCAAGATTATCTCTGCAGTAAAATGGGAGAAGAATTCAAGGAATTCGGGAGGGTGTACCAAGATTACAGTGAGGCTATGAGCACTCTTTCTATTGGGATCATGGAGCTTCTGGGATTGAGCCTTGGAGTTGACAGAGCACATTTCAAGGAATTTTTCGAGGACAATGATTCGATAATGAGGCTGAATTACTACCCACCGTGCCAGAAACCTGATCAAACTTTAGGCACCGGTCCTCATTGCGATCCAACATCTTTAACTATTCTCCACCAAGACCAAGTTGGAGGGCTTGAGGTGTTTGTGGATGATAAATGGCATTCCATTAGCCCAAATTTAAATGCCTTTGTTGTTAACATTGGTGACACTTTCATGGCTCTTTCAAACGGGAGGTACAAGAGCTGCTTGCACAGGGCAGTGGTGAACAGCCAAACACCAAGGAAGTCTCTTGCATTCTTCTTGTGTCCCAGAGATGATAAGGTGGTGAAGCCACCAAATGGGCTGGTTGATGATACTTCGTGCCCAAGAATATATCCAGATTTCACATGGCCTATGCTGCTGGAGTTCACACAGAAGCATTACAGAGCAGACATGAAGACTCTCCAAGTCTTCTCAAACTGGCTTCAACAGAAAAGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009648 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010228 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045544 GO:0046394 GO:0048366 GO:0048367 GO:0048572 GO:0048573 GO:0048575 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080167 GO:0090567 GO:0099402 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

388

Amino Acids

43.84

Weight (kDa)

6.13

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca	FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica	MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica	Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis	pycom02g16160
rosa_chinensis	RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata	RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora	Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa	Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha	Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana	Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	181
Acc65I	GGTACC	1 cut(s)	126
AccB1I	GGYRCC	2 cut(s)	126, 752
AccB7I	CCANNNNNTGG	1 cut(s)	1019
AclWI	GGATC	2 cut(s)	632, 764
AcsI	RAATTY	4 cut(s)	560, 569, 677, 856
AfaI	GTAC	3 cut(s)	128, 584, 917
AfiI	CCNNNNNNNGG	1 cut(s)	1019
AgeI	ACCGGT	1 cut(s)	755
AgsI	TTSAA	4 cut(s)	565, 673, 906, 1148
AluBI	AGCT	7 cut(s)	196, 248, 441, 513, 634, 924, 1161
AluI	AGCT	7 cut(s)	196, 248, 441, 513, 634, 924, 1161
Alw21I	GWGCWC	6 cut(s)	78, 123, 198, 423, 611, 667
Alw26I	GTCTC	2 cut(s)	473, 972
AlwI	GGATC	2 cut(s)	632, 764
AoxI	GGCC	3 cut(s)	158, 279, 1070
ApeKI	GCWGC	5 cut(s)	248, 438, 924, 1078, 1158
ApoI	RAATTY	4 cut(s)	560, 569, 677, 856
AsiGI	ACCGGT	1 cut(s)	755
Asp718I	GGTACC	1 cut(s)	126
AspLEI	GCGC	2 cut(s)	182, 403
AspS9I	GGNCC	1 cut(s)	758
AsuHPI	GGTGA	3 cut(s)	896, 955, 1018
AvaII	GGWCC	1 cut(s)	758
BaeGI	GKGCMC	1 cut(s)	1046
BanI	GGYRCC	2 cut(s)	126, 752
BanII	GRGCYC	1 cut(s)	198
BbsI	GAAGAC	2 cut(s)	1123, 1124
Bbv12I	GWGCWC	6 cut(s)	78, 123, 198, 423, 611, 667
BbvI	GCAGC	4 cut(s)	235, 450, 911, 1065
BclI	TGATCA	2 cut(s)	18, 739
BcoDI	GTCTC	2 cut(s)	473, 972
BfaI	CTAG	1 cut(s)	413
BfmI	CTRYAG	2 cut(s)	501, 541
BisI	GCNGC	5 cut(s)	249, 439, 925, 1079, 1159
BlsI	GCNGC	5 cut(s)	250, 440, 926, 1080, 1160
Bme18I	GGWCC	1 cut(s)	758
BmgT120I	GGNCC	1 cut(s)	758
BmiI	GGNNCC	2 cut(s)	128, 754
BmsI	GCATC	2 cut(s)	100, 334
BpiI	GAAGAC	2 cut(s)	1123, 1124
BpmI	CTGGAG	1 cut(s)	1103
Bpu10I	CCTNAGC	2 cut(s)	122, 192
BpuEI	CTTGAG	1 cut(s)	836
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	4 cut(s)	45, 470, 649, 959
BsaWI	WCCGGW	1 cut(s)	755
Bsc4I	CCNNNNNNNGG	1 cut(s)	1019
Bse118I	RCCGGY	1 cut(s)	755
Bse1I	ACTGG	3 cut(s)	451, 519, 1145
Bse3DI	GCAATG	1 cut(s)	763
Bse8I	GATNNNNATC	1 cut(s)	348
BseDI	CCNNGG	4 cut(s)	45, 470, 649, 959
BseGI	GGATG	3 cut(s)	367, 515, 835
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	1019
BseMI	GCAATG	1 cut(s)	763
BseMII	CTCAG	3 cut(s)	129, 136, 183
BseNI	ACTGG	3 cut(s)	451, 519, 1145
BseSI	GKGCMC	1 cut(s)	1046
BseXI	GCAGC	4 cut(s)	235, 450, 911, 1065
BshFI	GGCC	3 cut(s)	160, 281, 1072
BshNI	GGYRCC	2 cut(s)	126, 752
BshTI	ACCGGT	1 cut(s)	755
BsiHKAI	GWGCWC	6 cut(s)	78, 123, 198, 423, 611, 667
BsiSI	CCGG	1 cut(s)	756
BslFI	GGGAC	2 cut(s)	188, 972
BslI	CCNNNNNNNGG	1 cut(s)	1019
BsmAI	GTCTC	2 cut(s)	473, 972
BsmFI	GGGAC	2 cut(s)	188, 972
BsmI	GAATGC	2 cut(s)	841, 974
BsnI	GGCC	3 cut(s)	160, 281, 1072
Bsp1286I	GDGCHC	7 cut(s)	78, 123, 198, 423, 611, 667, 1046
Bsp143I	GATC	4 cut(s)	18, 624, 739, 769
Bsp19I	CCATGG	2 cut(s)	45, 470
BspANI	GGCC	3 cut(s)	160, 281, 1072
BspCNI	CTCAG	3 cut(s)	128, 135, 184
BspLI	GGNNCC	2 cut(s)	128, 754
BspMAI	CTGCAG	2 cut(s)	505, 545
BspPI	GGATC	2 cut(s)	632, 764
BspT107I	GGYRCC	2 cut(s)	126, 752
BsrDI	GCAATG	1 cut(s)	763
BsrFI	RCCGGY	1 cut(s)	755
BsrI	ACTGG	3 cut(s)	451, 519, 1145
BssAI	RCCGGY	1 cut(s)	755
BssECI	CCNNGG	4 cut(s)	45, 470, 649, 959
BssMI	GATC	4 cut(s)	18, 624, 739, 769
BssT1I	CCWWGG	4 cut(s)	45, 470, 649, 959
Bst4CI	ACNGT	4 cut(s)	150, 425, 596, 726
BstC8I	GCNNGC	4 cut(s)	38, 283, 436, 929
BstDEI	CTNAG	3 cut(s)	115, 122, 192
BstDSI	CCRYGG	2 cut(s)	45, 470
BstF5I	GGATG	3 cut(s)	367, 515, 835
BstHHI	GCGC	2 cut(s)	182, 403
BstKTI	GATC	4 cut(s)	21, 627, 742, 772
BstMAI	GTCTC	2 cut(s)	473, 972
BstMBI	GATC	4 cut(s)	18, 624, 739, 769
BstMWI	GCNNNNNNNGC	4 cut(s)	257, 282, 435, 1078
BstSFI	CTRYAG	2 cut(s)	501, 541
BstSLI	GKGCMC	1 cut(s)	1046
BstV1I	GCAGC	4 cut(s)	235, 450, 911, 1065
BstV2I	GAAGAC	2 cut(s)	1123, 1124
BstXI	CCANNNNNNTGG	1 cut(s)	293
BsuRI	GGCC	3 cut(s)	160, 281, 1072
BtgI	CCRYGG	2 cut(s)	45, 470
BtgZI	GCGATG	1 cut(s)	335
BtsCI	GGATG	3 cut(s)	367, 515, 835
BtsI	GCAGTG	1 cut(s)	945
BtsIMutI	CAGTG	5 cut(s)	123, 421, 444, 601, 945
Cac8I	GCNNGC	4 cut(s)	38, 283, 436, 929
CfoI	GCGC	2 cut(s)	182, 403
Cfr10I	RCCGGY	1 cut(s)	755
Cfr13I	GGNCC	1 cut(s)	758
Csp6I	GTAC	3 cut(s)	127, 583, 916
CspAI	ACCGGT	1 cut(s)	755
CviQI	GTAC	3 cut(s)	127, 583, 916
DdeI	CTNAG	3 cut(s)	115, 122, 192
DpnI	GATC	4 cut(s)	20, 626, 741, 771
DpnII	GATC	4 cut(s)	18, 624, 739, 769
DraI	TTTAAA	1 cut(s)	861
Ecl136II	GAGCTC	1 cut(s)	196
Eco130I	CCWWGG	4 cut(s)	45, 470, 649, 959
Eco147I	AGGCCT	1 cut(s)	281
Eco24I	GRGCYC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	758
Eco53kI	GAGCTC	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	196
EcoRI	GAATTC	2 cut(s)	560, 569
EcoT14I	CCWWGG	4 cut(s)	45, 470, 649, 959
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	4 cut(s)	45, 470, 649, 959
FalI	AAGNNNNNCTT	6 cut(s)	192, 224, 281, 313, 911, 943
FaqI	GGGAC	2 cut(s)	188, 972
FauNDI	CATATG	1 cut(s)	155
FbaI	TGATCA	2 cut(s)	18, 739
Fnu4HI	GCNGC	5 cut(s)	249, 439, 925, 1079, 1159
FokI	GGATG	3 cut(s)	374, 502, 842
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	5 cut(s)	249, 439, 925, 1079, 1159
FspBI	CTAG	1 cut(s)	413
FspI	TGCGCA	1 cut(s)	181
GlaI	GCGC	2 cut(s)	181, 402
GluI	GCNGC	5 cut(s)	249, 439, 925, 1079, 1159
GsuI	CTGGAG	1 cut(s)	1103
HaeIII	GGCC	3 cut(s)	160, 281, 1072
HapII	CCGG	1 cut(s)	756
HhaI	GCGC	2 cut(s)	182, 403
Hin6I	GCGC	2 cut(s)	180, 401
HinP1I	GCGC	2 cut(s)	180, 401
HincII	GTYRAC	3 cut(s)	325, 658, 877
HindII	GTYRAC	3 cut(s)	325, 658, 877
HinfI	GANTC	5 cut(s)	313, 453, 481, 695, 1120
HpaI	GTTAAC	1 cut(s)	877
HpaII	CCGG	1 cut(s)	756
HphI	GGTGA	3 cut(s)	896, 955, 1018
Hpy166II	GTNNAC	6 cut(s)	325, 583, 658, 877, 946, 1089
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	3 cut(s)	234, 574, 1058
Hpy8I	GTNNAC	6 cut(s)	325, 583, 658, 877, 946, 1089
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	4 cut(s)	150, 425, 596, 726
HpyCH4V	TGCA	6 cut(s)	15, 251, 503, 543, 931, 974
HpyF10VI	GCNNNNNNNGC	4 cut(s)	257, 282, 435, 1078
HpyF3I	CTNAG	3 cut(s)	115, 122, 192
HspAI	GCGC	2 cut(s)	180, 401
KpnI	GGTACC	1 cut(s)	130
Ksp22I	TGATCA	2 cut(s)	18, 739
KspAI	GTTAAC	1 cut(s)	877
Kzo9I	GATC	4 cut(s)	18, 624, 739, 769
LmnI	GCTCC	3 cut(s)	201, 418, 631
Lsp1109I	GCAGC	4 cut(s)	235, 450, 911, 1065
LweI	GCATC	2 cut(s)	100, 334
MaeI	CTAG	1 cut(s)	413
MaeIII	GTNAC	1 cut(s)	884
MalI	GATC	4 cut(s)	20, 626, 741, 771
MboI	GATC	4 cut(s)	18, 624, 739, 769
MboII	GAAGA	5 cut(s)	42, 569, 970, 1123, 1129
MfeI	CAATTG	2 cut(s)	6, 267
MhlI	GDGCHC	7 cut(s)	78, 123, 198, 423, 611, 667, 1046
MluCI	AATT	7 cut(s)	6, 267, 560, 569, 677, 712, 856
MlyI	GAGTC	2 cut(s)	475, 1114
MmeI	TCCRAC	2 cut(s)	787, 797
MseI	TTAA	3 cut(s)	782, 860, 876
MslI	CAYNNNNRTG	1 cut(s)	893
MspA1I	CMGCKG	1 cut(s)	1161
MspI	CCGG	1 cut(s)	756
MunI	CAATTG	2 cut(s)	6, 267
Mva1269I	GAATGC	2 cut(s)	841, 974
MwoI	GCNNNNNNNGC	4 cut(s)	257, 282, 435, 1078
NcoI	CCATGG	2 cut(s)	45, 470
NdeI	CATATG	1 cut(s)	155
NdeII	GATC	4 cut(s)	18, 624, 739, 769
NlaIV	GGNNCC	2 cut(s)	128, 754
NmuCI	GTSAC	1 cut(s)	884
NsbI	TGCGCA	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	281
PctI	GAATGC	2 cut(s)	841, 974
PfeI	GAWTC	3 cut(s)	313, 453, 695
PflMI	CCANNNNNTGG	1 cut(s)	1019
PinAI	ACCGGT	1 cut(s)	755
PkrI	GCNGC	5 cut(s)	250, 440, 926, 1080, 1160
PleI	GAGTC	2 cut(s)	475, 1114
PpsI	GAGTC	2 cut(s)	475, 1114
Psp124BI	GAGCTC	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	128, 754
PspPI	GGNCC	1 cut(s)	758
PstI	CTGCAG	2 cut(s)	505, 545
PvuII	CAGCTG	1 cut(s)	1161
RsaI	GTAC	3 cut(s)	128, 584, 917
RsaNI	GTAC	3 cut(s)	127, 583, 916
RseI	CAYNNNNRTG	1 cut(s)	893
SacI	GAGCTC	1 cut(s)	198
SaqAI	TTAA	3 cut(s)	782, 860, 876
SatI	GCNGC	5 cut(s)	249, 439, 925, 1079, 1159
Sau3AI	GATC	4 cut(s)	18, 624, 739, 769
Sau96I	GGNCC	1 cut(s)	758
SchI	GAGTC	2 cut(s)	475, 1114
SduI	GDGCHC	7 cut(s)	78, 123, 198, 423, 611, 667, 1046
SfaNI	GCATC	2 cut(s)	100, 334
SfcI	CTRYAG	2 cut(s)	501, 541
SinI	GGWCC	1 cut(s)	758
SmiI	ATTTAAAT	1 cut(s)	861
SmiMI	CAYNNNNRTG	1 cut(s)	893
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	7 cut(s)	6, 267, 560, 569, 677, 712, 856
SseBI	AGGCCT	1 cut(s)	281
SspMI	CTAG	1 cut(s)	413
SstI	GAGCTC	1 cut(s)	198
StuI	AGGCCT	1 cut(s)	281
StyI	CCWWGG	4 cut(s)	45, 470, 649, 959
SwaI	ATTTAAAT	1 cut(s)	861
TaaI	ACNGT	4 cut(s)	150, 425, 596, 726
TaqI	TCGA	2 cut(s)	684, 698
TasI	AATT	7 cut(s)	6, 267, 560, 569, 677, 712, 856
TfiI	GAWTC	3 cut(s)	313, 453, 695
Tru1I	TTAA	3 cut(s)	782, 860, 876
Tru9I	TTAA	3 cut(s)	782, 860, 876
TscAI	CASTG	5 cut(s)	123, 428, 451, 601, 945
TseFI	GTSAC	1 cut(s)	884
TseI	GCWGC	5 cut(s)	248, 438, 924, 1078, 1158
Tsp45I	GTSAC	1 cut(s)	884
TspDTI	ATGAA	3 cut(s)	142, 883, 1130
TspRI	CASTG	5 cut(s)	123, 428, 451, 601, 945
Van91I	CCANNNNNTGG	1 cut(s)	1019
VpaK11BI	GGWCC	1 cut(s)	758
XapI	RAATTY	4 cut(s)	560, 569, 677, 856
XcmI	CCANNNNNNNNNTGG	2 cut(s)	803, 1065
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.