Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000462

Physical Location & Seq

Genomic Coordinates Reverse (-)

24081390 .. 24081755

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00303690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCTGGTGACTGCTCCTGCTGAGCAAACCCCTGTGGTTTTTGACTCCCAAGTCATTCAGTATCAATCCAACATCCCTTCCCAGTTCATATGGCCGGACCACGAGAAGACGAGCCCCGACCGGCAGGACCTTCTCTCTCCGGCTATCGACCTCAACGGCTTCCTCAGCGGCGACCCTGCCATCGTCGCGAACTCGATTCGTTCGGTCGACGAGGCCTGCAAGAAGCATGGATTCTTCCTCCTTGTGAACCACGGAGTTGATCGGGAGCTCATTGCGAAAGCTCACGAGTACATGGACGTGTTCTTTGAGATGAAGCTCTCGGAGAAGCAAAGGGCTCAGAGGAAGGTTGGTGAGAGCAATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010228 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045544 GO:0046394 GO:0048366 GO:0048367 GO:0048572 GO:0048573 GO:0048575 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

121

Amino Acids

13.59

Weight (kDa)

5.25

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	47 - 115	4.9e-16	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca	FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica	MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica	Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis	pycom02g16160
rosa_chinensis	RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata	RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora	Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa	Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha	Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana	Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	188
AciI	CCGC	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	92
AfaI	GTAC	1 cut(s)	290
AflIII	ACRYGT	1 cut(s)	297
AjiI	CACGTC	1 cut(s)	298
AluBI	AGCT	3 cut(s)	268, 281, 316
AluI	AGCT	3 cut(s)	268, 281, 316
Alw21I	GWGCWC	1 cut(s)	270
AoxI	GGCC	2 cut(s)	92, 213
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AspS9I	GGNCC	2 cut(s)	97, 127
AsuHPI	GGTGA	2 cut(s)	19, 362
AvaII	GGWCC	2 cut(s)	97, 127
BanII	GRGCYC	3 cut(s)	116, 270, 337
BauI	CACGAG	2 cut(s)	101, 284
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	270
BbvCI	CCTCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	172
BisI	GCNGC	1 cut(s)	169
BlpI	GCTNAGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	170
Bme18I	GGWCC	2 cut(s)	97, 127
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	97, 127
BmrI	ACTGGG	1 cut(s)	76
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu1102I	GCTNAGC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	250
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	82
Bse3DI	GCAATG	2 cut(s)	270, 364
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	72
BseMI	GCAATG	2 cut(s)	270, 364
BseMII	CTCAG	3 cut(s)	12, 178, 350
BseNI	ACTGG	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	2 cut(s)	121, 207
BshFI	GGCC	2 cut(s)	94, 215
BsiEI	CGRYCG	2 cut(s)	121, 207
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	3 cut(s)	95, 121, 140
BsnI	GGCC	2 cut(s)	94, 215
Bsp1286I	GDGCHC	3 cut(s)	116, 270, 337
Bsp143I	GATC	1 cut(s)	259
Bsp1720I	GCTNAGC	1 cut(s)	21
Bsp68I	TCGCGA	1 cut(s)	188
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	2 cut(s)	94, 215
BspCNI	CTCAG	3 cut(s)	13, 177, 349
BspFNI	CGCG	1 cut(s)	188
BsrDI	GCAATG	2 cut(s)	270, 364
BsrFI	RCCGGY	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	82
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	1 cut(s)	259
BssSI	CACGAG	2 cut(s)	101, 284
Bst2BI	CACGAG	2 cut(s)	101, 284
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	3 cut(s)	21, 164, 336
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	188
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMCI	CGRYCG	2 cut(s)	121, 207
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 185
BstUI	CGCG	1 cut(s)	188
BstV2I	GAAGAC	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	94, 215
BtgI	CCRYGG	1 cut(s)	250
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	72
BtuMI	TCGCGA	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	217
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	2 cut(s)	97, 127
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	2 cut(s)	227, 292
CviJI	RGCY	9 cut(s)	94, 114, 143, 159, 215, 268, 281, 316, 335
CviKI_1	RGCY	9 cut(s)	94, 114, 143, 159, 215, 268, 281, 316, 335
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	3 cut(s)	21, 164, 336
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
EaeI	YGGCCR	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	268
Eco147I	AGGCCT	1 cut(s)	215
Eco24I	GRGCYC	3 cut(s)	116, 270, 337
Eco47I	GGWCC	2 cut(s)	97, 127
Eco53kI	GAGCTC	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	127
EcoT38I	GRGCYC	3 cut(s)	116, 270, 337
FaeI	CATG	2 cut(s)	230, 295
FaiI	YATR	4 cut(s)	89, 91, 228, 293
FatI	CATG	2 cut(s)	226, 291
FauNDI	CATATG	1 cut(s)	89
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	3 cut(s)	116, 270, 337
Fsp4HI	GCNGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	169
HaeIII	GGCC	2 cut(s)	94, 215
HapII	CCGG	3 cut(s)	95, 121, 140
Hin1II	CATG	2 cut(s)	230, 295
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	3 cut(s)	44, 196, 231
HpaII	CCGG	3 cut(s)	95, 121, 140
HphI	GGTGA	2 cut(s)	19, 362
Hpy166II	GTNNAC	2 cut(s)	208, 247
Hpy188I	TCNGA	2 cut(s)	322, 339
Hpy188III	TCNNGA	3 cut(s)	187, 263, 284
Hpy8I	GTNNAC	2 cut(s)	208, 247
Hpy99I	CGWCG	2 cut(s)	188, 212
HpyAV	CCTTC	3 cut(s)	87, 140, 337
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 185
HpyF3I	CTNAG	3 cut(s)	21, 164, 336
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	230, 295
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	2 cut(s)	19, 265
LpnPI	CCDG	9 cut(s)	30, 45, 95, 108, 110, 134, 153, 189, 229
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	2 cut(s)	118, 226
MhlI	GDGCHC	3 cut(s)	116, 270, 337
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	5 cut(s)	161, 173, 205, 248, 333
MseI	TTAA	1 cut(s)	364
MslI	CAYNNNNRTG	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	3 cut(s)	95, 121, 140
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	2 cut(s)	165, 185
NdeI	CATATG	1 cut(s)	89
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	2 cut(s)	230, 295
NmuCI	GTSAC	1 cut(s)	7
NruI	TCGCGA	1 cut(s)	188
PceI	AGGCCT	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	196, 231
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PpuMI	RGGWCCY	1 cut(s)	127
Psp124BI	GAGCTC	1 cut(s)	270
Psp5II	RGGWCCY	1 cut(s)	127
PspPI	GGNCC	2 cut(s)	97, 127
PspPPI	RGGWCCY	1 cut(s)	127
RruI	TCGCGA	1 cut(s)	188
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	296
SacI	GAGCTC	1 cut(s)	270
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	364
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	2 cut(s)	97, 127
SchI	GAGTC	1 cut(s)	38
SduI	GDGCHC	3 cut(s)	116, 270, 337
SetI	ASST	7 cut(s)	132, 153, 270, 283, 300, 318, 348
SinI	GGWCC	2 cut(s)	97, 127
SmiMI	CAYNNNNRTG	1 cut(s)	296
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	270
StuI	AGGCCT	1 cut(s)	215
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	3 cut(s)	147, 194, 207
TaqII	GACCGA	1 cut(s)	193
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	196, 231
Tru1I	TTAA	1 cut(s)	364
Tru9I	TTAA	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	76, 326
TspGWI	ACGGA	1 cut(s)	267
VpaK11BI	GGWCC	2 cut(s)	97, 127
XmiI	GTMKAC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.