Rw1G020370

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
44016721 .. 44020361
3641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G020370.1

Sequence Viewer

Length: 1011 bp
ATGCTGGTGACTGCTCCTCCTGAGCAAACCCCTGTGGTTTTAGACTCCCAAGTCATTCAGTACCAATCCAACATCCCTTCCCAGTTCATATGGCCGGACCACGAGAAGCCGAGCCCCAACCGGCACGACCTTCTCGTTCCAGCCATCGACCCCAACGGCTTCCTCAGCGGCGATCCTACCATCCCCGCGAATTCGATTCGTTCGGTCTACGAGACCTGCAAGAAGCATGGATTCTTCCTCATCGTGAACCACGGAGTTGATCGGGAGCTCATTGCGAAAGGTCACGAGTACATGGACGTGTTCTTTAAGATGAAGCTCTCGGAGAAGCAAAGGGCTCAGAGGAAGGTTGGTGAGAGCAATGGTTATACTAGTAGCTTCACTGGCAGGTTTAACTCCAAGCTTCCATGGAAAGAAACACTTTGTTTCAGGTACTCTGCTGAGAGCCAGAGCTCAACAGTCGTCAAGGACTACTTTGTGAATGTTTTGGGTGAAGATTTCAAAGAAATCGGATCTAACACTGGGAAACGATTCGATCATGAGGAGTACTTCAAAGAGTTCTACGGAGGAAACGATTCGATCATGAGGTTGAACTACTATCCAATGTGCCAAAAACCAGATCTAACCCTGCGAACTGGCATGGGCCTCACAGATCAAGTAGGGGGCCTTGAAGTGTTTTTCGATGAGAAGTGGCACATCGTTACTCCTGTCCTTGGTTCTTTCGTTATTAACATTGGTGATACTTTCATGCTGCTTCCACAGGGCTGTGGTAAACAACAAAACTGTAAGGAAATCTCTTGCTTTCTTTCTCAATCCAAACAAGGACAGAGTAGTGACTCCTCCAGCAATTTGATCAGTGCTGATAACCCAAGGTTGTACCCAGACTTTACTTGGCCTACTCTGCTAGAGTTTACCCAGAAACATTACAGGGCTGACATGAGCACCATTGATGCCTTCTCGGACTGGATTAATAAGCAAAAGGGTGGAGAGGAAAAGAAAGACCGAAGAAACTAG

Protein Analysis

336

Amino Acids

38.34

Weight (kDa)

6.09

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 46 - 150 1.3e-18 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 191 - 260 5.2e-09 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis pycom02g16160
rosa_chinensis RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 50
Acc36I ACCTGC 2 cut(s) 224, 375
AccI GTMKAC 1 cut(s) 207
AccII CGCG 1 cut(s) 188
AciI CCGC 2 cut(s) 168, 186
AclWI GGATC 2 cut(s) 167, 517
AcoI YGGCCR 1 cut(s) 92
AcsI RAATTY 1 cut(s) 190
AfaI GTAC 5 cut(s) 62, 290, 431, 545, 875
AfiI CCNNNNNNNGG 1 cut(s) 710
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 4 cut(s) 499, 550, 589, 668
AhlI ACTAGT 1 cut(s) 368
AjiI CACGTC 1 cut(s) 298
AluBI AGCT 5 cut(s) 268, 316, 375, 400, 450
AluI AGCT 5 cut(s) 268, 316, 375, 400, 450
Alw21I GWGCWC 3 cut(s) 270, 452, 941
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 2 cut(s) 167, 517
AoxI GGCC 4 cut(s) 92, 640, 661, 890
ApeKI GCWGC 1 cut(s) 748
ApoI RAATTY 1 cut(s) 190
AseI ATTAAT 1 cut(s) 966
Asp700I GAANNNNTTC 2 cut(s) 527, 571
AspS9I GGNCC 3 cut(s) 97, 640, 661
AsuHPI GGTGA 4 cut(s) 19, 362, 500, 746
AvaII GGWCC 1 cut(s) 97
BanII GRGCYC 4 cut(s) 116, 270, 337, 452
BauI CACGAG 2 cut(s) 101, 284
Bbv12I GWGCWC 3 cut(s) 270, 452, 941
BbvCI CCTCAGC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 735
BccI CCATC 2 cut(s) 152, 188
BceAI ACGGC 1 cut(s) 172
BclI TGATCA 1 cut(s) 849
BcoDI GTCTC 1 cut(s) 206
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 3 cut(s) 369, 902, 1009
BfuAI ACCTGC 2 cut(s) 224, 375
BglII AGATCT 1 cut(s) 616
BisI GCNGC 2 cut(s) 169, 749
BlsI GCNGC 2 cut(s) 170, 750
BmcAI AGTACT 1 cut(s) 545
Bme18I GGWCC 1 cut(s) 97
BmgBI CACGTC 1 cut(s) 298
BmgT120I GGNCC 3 cut(s) 97, 640, 661
BmiI GGNNCC 1 cut(s) 662
BmrI ACTGGG 2 cut(s) 76, 528
BmsI GCATC 1 cut(s) 937
BmuI ACTGGG 2 cut(s) 76, 528
BpmI CTGGAG 1 cut(s) 823
Bpu10I CCTNAGC 2 cut(s) 21, 164
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 4 cut(s) 250, 404, 709, 866
BsaXI ACNNNNNCTCC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 710
Bse118I RCCGGY 1 cut(s) 120
Bse1I ACTGG 5 cut(s) 82, 385, 523, 637, 965
Bse3DI GCAATG 2 cut(s) 270, 364
BseDI CCNNGG 4 cut(s) 250, 404, 709, 866
BseGI GGATG 2 cut(s) 72, 180
BseLI CCNNNNNNNGG 1 cut(s) 710
BseMI GCAATG 2 cut(s) 270, 364
BseMII CTCAG 4 cut(s) 12, 178, 350, 429
BseNI ACTGG 5 cut(s) 82, 385, 523, 637, 965
BseRI GAGGAG 3 cut(s) 6, 554, 826
BseXI GCAGC 1 cut(s) 735
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 4 cut(s) 94, 642, 663, 892
BsiHKAI GWGCWC 3 cut(s) 270, 452, 941
BsiSI CCGG 2 cut(s) 95, 121
BslI CCNNNNNNNGG 1 cut(s) 710
BsmAI GTCTC 1 cut(s) 206
BsnI GGCC 4 cut(s) 94, 642, 663, 892
Bso31I GGTCTC 1 cut(s) 206
Bsp1286I GDGCHC 5 cut(s) 116, 270, 337, 452, 941
Bsp143I GATC 8 cut(s) 172, 259, 509, 532, 576, 616, 649, 849
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 2 cut(s) 168, 186
BspANI GGCC 4 cut(s) 94, 642, 663, 892
BspCNI CTCAG 4 cut(s) 13, 177, 349, 430
BspFNI CGCG 1 cut(s) 188
BspHI TCATGA 2 cut(s) 535, 579
BspLI GGNNCC 1 cut(s) 662
BspMI ACCTGC 2 cut(s) 224, 375
BspPI GGATC 2 cut(s) 167, 517
BspTNI GGTCTC 1 cut(s) 206
BsrDI GCAATG 2 cut(s) 270, 364
BsrFI RCCGGY 1 cut(s) 120
BsrI ACTGG 5 cut(s) 82, 385, 523, 637, 965
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 4 cut(s) 250, 404, 709, 866
BssMI GATC 8 cut(s) 172, 259, 509, 532, 576, 616, 649, 849
BssSI CACGAG 2 cut(s) 101, 284
BssT1I CCWWGG 3 cut(s) 404, 709, 866
Bst2BI CACGAG 2 cut(s) 101, 284
Bst4CI ACNGT 2 cut(s) 457, 782
BstDEI CTNAG 4 cut(s) 21, 164, 336, 438
BstDSI CCRYGG 2 cut(s) 250, 404
BstF5I GGATG 2 cut(s) 72, 180
BstFNI CGCG 1 cut(s) 188
BstKTI GATC 8 cut(s) 175, 262, 512, 535, 579, 619, 652, 852
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 8 cut(s) 172, 259, 509, 532, 576, 616, 649, 849
BstMWI GCNNNNNNNGC 3 cut(s) 165, 381, 898
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 735
BstX2I RGATCY 2 cut(s) 509, 616
BstYI RGATCY 2 cut(s) 509, 616
BsuRI GGCC 4 cut(s) 94, 642, 663, 892
BtgI CCRYGG 2 cut(s) 250, 404
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 2 cut(s) 72, 180
BtsIMutI CAGTG 3 cut(s) 378, 516, 859
BveI ACCTGC 2 cut(s) 224, 375
CciI TCATGA 2 cut(s) 535, 579
Cfr10I RCCGGY 1 cut(s) 120
Cfr13I GGNCC 3 cut(s) 97, 640, 661
Csp6I GTAC 5 cut(s) 61, 289, 430, 544, 874
CviAII CATG 8 cut(s) 227, 292, 405, 536, 580, 637, 745, 934
CviQI GTAC 5 cut(s) 61, 289, 430, 544, 874
DdeI CTNAG 4 cut(s) 21, 164, 336, 438
DpnI GATC 8 cut(s) 174, 261, 511, 534, 578, 618, 651, 851
DpnII GATC 8 cut(s) 172, 259, 509, 532, 576, 616, 649, 849
DrdI GACNNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 50
EaeI YGGCCR 1 cut(s) 92
Ecl136II GAGCTC 2 cut(s) 268, 450
Eco130I CCWWGG 3 cut(s) 404, 709, 866
Eco24I GRGCYC 4 cut(s) 116, 270, 337, 452
Eco31I GGTCTC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 97
Eco53kI GAGCTC 2 cut(s) 268, 450
EcoICRI GAGCTC 2 cut(s) 268, 450
EcoO109I RGGNCCY 1 cut(s) 661
EcoRI GAATTC 1 cut(s) 190
EcoT14I CCWWGG 3 cut(s) 404, 709, 866
EcoT38I GRGCYC 4 cut(s) 116, 270, 337, 452
ErhI CCWWGG 3 cut(s) 404, 709, 866
FaeI CATG 8 cut(s) 230, 295, 408, 539, 583, 640, 748, 937
FalI AAGNNNNNCTT 4 cut(s) 402, 434, 455, 487
FatI CATG 8 cut(s) 226, 291, 404, 535, 579, 636, 744, 933
FauI CCCGC 1 cut(s) 193
FauNDI CATATG 1 cut(s) 89
FbaI TGATCA 1 cut(s) 849
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 2 cut(s) 169, 749
FokI GGATG 2 cut(s) 59, 167
FriOI GRGCYC 4 cut(s) 116, 270, 337, 452
Fsp4HI GCNGC 2 cut(s) 169, 749
FspBI CTAG 3 cut(s) 369, 902, 1009
GluI GCNGC 2 cut(s) 169, 749
GsuI CTGGAG 1 cut(s) 823
HaeIII GGCC 4 cut(s) 94, 642, 663, 892
HapII CCGG 2 cut(s) 95, 121
Hin1II CATG 8 cut(s) 230, 295, 408, 539, 583, 640, 748, 937
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 6 cut(s) 44, 196, 231, 528, 572, 833
HpaII CCGG 2 cut(s) 95, 121
HphI GGTGA 4 cut(s) 19, 362, 500, 746
Hpy166II GTNNAC 4 cut(s) 208, 247, 770, 909
Hpy188I TCNGA 4 cut(s) 322, 339, 509, 958
Hpy188III TCNNGA 6 cut(s) 20, 244, 263, 284, 536, 580
Hpy8I GTNNAC 4 cut(s) 208, 247, 770, 909
HpyAV CCTTC 4 cut(s) 87, 140, 337, 961
HpyCH4III ACNGT 2 cut(s) 457, 782
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 381, 898
HpyF3I CTNAG 4 cut(s) 21, 164, 336, 438
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 8 cut(s) 230, 295, 408, 539, 583, 640, 748, 937
Ksp22I TGATCA 1 cut(s) 849
Kzo9I GATC 8 cut(s) 172, 259, 509, 532, 576, 616, 649, 849
LmnI GCTCC 2 cut(s) 19, 265
Lsp1109I GCAGC 1 cut(s) 735
LweI GCATC 1 cut(s) 937
MaeI CTAG 3 cut(s) 369, 902, 1009
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 4 cut(s) 7, 281, 697, 830
MalI GATC 8 cut(s) 174, 261, 511, 534, 578, 618, 651, 851
MboI GATC 8 cut(s) 172, 259, 509, 532, 576, 616, 649, 849
MboII GAAGA 2 cut(s) 226, 503
MflI RGATCY 2 cut(s) 509, 616
MhlI GDGCHC 5 cut(s) 116, 270, 337, 452, 941
MluCI AATT 2 cut(s) 190, 844
MlyI GAGTC 2 cut(s) 38, 827
MmeI TCCRAC 1 cut(s) 93
MroXI GAANNNNTTC 2 cut(s) 527, 571
MseI TTAA 4 cut(s) 306, 390, 726, 966
MslI CAYNNNNRTG 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 2 cut(s) 95, 121
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 3 cut(s) 165, 381, 898
NcoI CCATGG 1 cut(s) 404
NdeI CATATG 1 cut(s) 89
NdeII GATC 8 cut(s) 172, 259, 509, 532, 576, 616, 649, 849
NlaIII CATG 8 cut(s) 230, 295, 408, 539, 583, 640, 748, 937
NlaIV GGNNCC 1 cut(s) 662
NmeAIII GCCGAG 1 cut(s) 135
NmuCI GTSAC 3 cut(s) 7, 281, 830
PagI TCATGA 2 cut(s) 535, 579
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 567
PdmI GAANNNNTTC 2 cut(s) 527, 571
PfeI GAWTC 4 cut(s) 196, 231, 528, 572
PkrI GCNGC 2 cut(s) 170, 750
PleI GAGTC 2 cut(s) 38, 827
PpsI GAGTC 2 cut(s) 38, 827
PshBI ATTAAT 1 cut(s) 966
Psp124BI GAGCTC 2 cut(s) 270, 452
PspN4I GGNNCC 1 cut(s) 662
PspPI GGNCC 3 cut(s) 97, 640, 661
PsuI RGATCY 2 cut(s) 509, 616
RsaI GTAC 5 cut(s) 62, 290, 431, 545, 875
RsaNI GTAC 5 cut(s) 61, 289, 430, 544, 874
RseI CAYNNNNRTG 1 cut(s) 296
SacI GAGCTC 2 cut(s) 270, 452
SaqAI TTAA 4 cut(s) 306, 390, 726, 966
SatI GCNGC 2 cut(s) 169, 749
Sau3AI GATC 8 cut(s) 172, 259, 509, 532, 576, 616, 649, 849
Sau96I GGNCC 3 cut(s) 97, 640, 661
ScaI AGTACT 1 cut(s) 545
SchI GAGTC 2 cut(s) 38, 827
SduI GDGCHC 5 cut(s) 116, 270, 337, 452, 941
SfaNI GCATC 1 cut(s) 937
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 296
SpeI ACTAGT 1 cut(s) 368
Sse9I AATT 2 cut(s) 190, 844
SsiI CCGC 2 cut(s) 168, 186
SspMI CTAG 3 cut(s) 369, 902, 1009
SstI GAGCTC 2 cut(s) 270, 452
StyI CCWWGG 3 cut(s) 404, 709, 866
TaaI ACNGT 2 cut(s) 457, 782
TaiI ACGT 1 cut(s) 300
TaqI TCGA 5 cut(s) 147, 194, 531, 575, 678
TaqII GACCGA 1 cut(s) 193
TasI AATT 2 cut(s) 190, 844
TatI WGTACW 2 cut(s) 288, 543
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 4 cut(s) 196, 231, 528, 572
Tru1I TTAA 4 cut(s) 306, 390, 726, 966
Tru9I TTAA 4 cut(s) 306, 390, 726, 966
TscAI CASTG 3 cut(s) 385, 523, 859
TseFI GTSAC 3 cut(s) 7, 281, 830
TseI GCWGC 1 cut(s) 748
Tsp45I GTSAC 3 cut(s) 7, 281, 830
TspDTI ATGAA 3 cut(s) 76, 326, 733
TspGWI ACGGA 2 cut(s) 267, 576
TspRI CASTG 3 cut(s) 385, 523, 859
VpaK11BI GGWCC 1 cut(s) 97
VspI ATTAAT 1 cut(s) 966
XapI RAATTY 1 cut(s) 190
XcmI CCANNNNNNNNNTGG 1 cut(s) 885
XmiI GTMKAC 1 cut(s) 207
XmnI GAANNNNTTC 2 cut(s) 527, 571
XspI CTAG 3 cut(s) 369, 902, 1009
ZrmI AGTACT 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.