Rmu_sc0002300.1_g000001

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002300.1
Physical Location & Seq
Reverse (-)
26204 .. 27180
977 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002300.1_g000001.1.cds

Sequence Viewer

Length: 837 bp
atgccggtgcctgctcctcctgagcaaacccctgtgattttcgactcccaagtcattcagtaccaaaccaacatcccttcccagttcatatggccagaccacgagaagccgttccccaaccggccgggccttctcgcgccggccatcgacctcaacggcttcctcagcggcgaccctgccatcgtcgcgaactcgattcgtttagtcgaccaggcctgcaaaaagcatggattcttcctcattgtaaaccatggagttgatccggacctccttgcgaaagctcacgagtacatggacgtgttctttgagatgaagctctcggagaagcaaagggctcagaggaaggttggtgagtgctacggttatgctagtagcttcaccggcaggtttaactccaaccttccatggaaagaaacactttcttttaggtactctgctgagagccagagctcaacagtcgtcaaggactactttgtgaatacgttgggtgaagatttcagggaaatcgggaagttctaccaagagtactgtgaagtgatgaacaaactatccaagggcatactggggctattgggactgagcctgggagttgggcagtacttcaaagagttctacgaaggaaacgattcgatcatgaggttgaactactatccaatgtgccaaaaaccagatttaacactgggaactgggcctcactgtgatcccacttccttgacaatccttcatcaggatcaagtagggggccttgaagtgtttttcgatgagaagtggcacaccgttactcctgtccttggttctttcgttgtcaacattggtgatacttttatggtaagttaa

Protein Analysis

278

Amino Acids

31.35

Weight (kDa)

5.25

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis pycom02g16160
rosa_chinensis RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 50
Acc36I ACCTGC 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 7
AccI GTMKAC 1 cut(s) 207
AccII CGCG 2 cut(s) 137, 188
AccIII TCCGGA 1 cut(s) 262
AciI CCGC 1 cut(s) 168
AclWI GGATC 3 cut(s) 254, 695, 738
AcoI YGGCCR 3 cut(s) 92, 122, 141
AfaI GTAC 5 cut(s) 62, 290, 431, 527, 599
AfiI CCNNNNNNNGG 2 cut(s) 727, 791
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 3 cut(s) 604, 643, 749
AjiI CACGTC 1 cut(s) 298
AjnI CCWGG 2 cut(s) 210, 582
AloI GAACNNNNNNTCC 2 cut(s) 533, 565
AluBI AGCT 4 cut(s) 281, 316, 375, 450
AluI AGCT 4 cut(s) 281, 316, 375, 450
Alw21I GWGCWC 1 cut(s) 452
AlwI GGATC 3 cut(s) 254, 695, 738
Aor13HI TCCGGA 1 cut(s) 262
AoxI GGCC 7 cut(s) 92, 122, 127, 141, 213, 689, 742
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
Asp700I GAANNNNTTC 2 cut(s) 110, 625
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 4 cut(s) 127, 265, 689, 742
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 4 cut(s) 362, 370, 500, 827
AvaII GGWCC 1 cut(s) 265
BalI TGGCCA 1 cut(s) 94
BanI GGYRCC 1 cut(s) 7
BanII GRGCYC 2 cut(s) 337, 452
BauI CACGAG 2 cut(s) 101, 284
Bbv12I GWGCWC 1 cut(s) 452
BbvCI CCTCAGC 1 cut(s) 164
BccI CCATC 2 cut(s) 152, 188
BceAI ACGGC 2 cut(s) 94, 172
BciT130I CCWGG 2 cut(s) 212, 584
BcnI CCSGG 1 cut(s) 126
BfaI CTAG 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 375
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
BmcAI AGTACT 2 cut(s) 527, 599
Bme1390I CCNGG 3 cut(s) 126, 212, 584
Bme18I GGWCC 1 cut(s) 265
BmgBI CACGTC 1 cut(s) 298
BmgT120I GGNCC 4 cut(s) 127, 265, 689, 742
BmiI GGNNCC 2 cut(s) 9, 743
BmrFI CCNGG 3 cut(s) 126, 212, 584
BmrI ACTGGG 4 cut(s) 76, 572, 689, 696
BmuI ACTGGG 4 cut(s) 76, 572, 689, 696
Bpu10I CCTNAGC 2 cut(s) 21, 164
BpuMI CCSGG 1 cut(s) 126
BsaJI CCNNGG 5 cut(s) 250, 404, 552, 583, 790
BsaWI WCCGGW 1 cut(s) 262
BsaXI ACNNNNNCTCC 2 cut(s) 766, 796
Bsc4I CCNNNNNNNGG 2 cut(s) 727, 791
Bse118I RCCGGY 4 cut(s) 4, 120, 139, 380
Bse1I ACTGG 4 cut(s) 82, 567, 684, 691
BseAI TCCGGA 1 cut(s) 262
BseBI CCWGG 2 cut(s) 212, 584
BseDI CCNNGG 5 cut(s) 250, 404, 552, 583, 790
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 2 cut(s) 727, 791
BseMII CTCAG 5 cut(s) 12, 178, 350, 429, 569
BseNI ACTGG 4 cut(s) 82, 567, 684, 691
BseRI GAGGAG 1 cut(s) 6
BseX3I CGGCCG 1 cut(s) 122
Bsh1236I CGCG 2 cut(s) 137, 188
Bsh1285I CGRYCG 1 cut(s) 125
BshFI GGCC 7 cut(s) 94, 124, 129, 143, 215, 691, 744
BshNI GGYRCC 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 125
BsiHKAI GWGCWC 1 cut(s) 452
BsiSI CCGG 6 cut(s) 5, 121, 125, 140, 263, 381
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 2 cut(s) 727, 791
BsmFI GGGAC 1 cut(s) 588
BsnI GGCC 7 cut(s) 94, 124, 129, 143, 215, 691, 744
Bsp1286I GDGCHC 2 cut(s) 337, 452
Bsp13I TCCGGA 1 cut(s) 262
Bsp143I GATC 4 cut(s) 259, 630, 700, 730
Bsp19I CCATGG 2 cut(s) 250, 404
Bsp68I TCGCGA 1 cut(s) 188
BspACI CCGC 1 cut(s) 168
BspANI GGCC 7 cut(s) 94, 124, 129, 143, 215, 691, 744
BspCNI CTCAG 5 cut(s) 13, 177, 349, 430, 570
BspEI TCCGGA 1 cut(s) 262
BspFNI CGCG 2 cut(s) 137, 188
BspHI TCATGA 1 cut(s) 633
BspLI GGNNCC 2 cut(s) 9, 743
BspMI ACCTGC 1 cut(s) 375
BspPI GGATC 3 cut(s) 254, 695, 738
BspT107I GGYRCC 1 cut(s) 7
BsrFI RCCGGY 4 cut(s) 4, 120, 139, 380
BsrI ACTGG 4 cut(s) 82, 567, 684, 691
BssAI RCCGGY 4 cut(s) 4, 120, 139, 380
BssECI CCNNGG 5 cut(s) 250, 404, 552, 583, 790
BssMI GATC 4 cut(s) 259, 630, 700, 730
BssSI CACGAG 2 cut(s) 101, 284
BssT1I CCWWGG 4 cut(s) 250, 404, 552, 790
Bst2BI CACGAG 2 cut(s) 101, 284
Bst2UI CCWGG 2 cut(s) 212, 584
Bst4CI ACNGT 5 cut(s) 362, 457, 530, 698, 778
BstC8I GCNNGC 3 cut(s) 12, 141, 217
BstDEI CTNAG 5 cut(s) 21, 164, 336, 438, 578
BstDSI CCRYGG 2 cut(s) 250, 404
BstENI CCTNNNNNAGG 1 cut(s) 725
BstF5I GGATG 1 cut(s) 72
BstFNI CGCG 2 cut(s) 137, 188
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 4 cut(s) 262, 633, 703, 733
BstMBI GATC 4 cut(s) 259, 630, 700, 730
BstMCI CGRYCG 1 cut(s) 125
BstMWI GCNNNNNNNGC 3 cut(s) 165, 185, 381
BstNI CCWGG 2 cut(s) 212, 584
BstSCI CCNGG 3 cut(s) 124, 210, 582
BstUI CGCG 2 cut(s) 137, 188
BstZI CGGCCG 1 cut(s) 122
BsuRI GGCC 7 cut(s) 94, 124, 129, 143, 215, 691, 744
BtgI CCRYGG 2 cut(s) 250, 404
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 677, 694
BtuMI TCGCGA 1 cut(s) 188
BveI ACCTGC 1 cut(s) 375
Cac8I GCNNGC 3 cut(s) 12, 141, 217
CciI TCATGA 1 cut(s) 633
CfoI GCGC 1 cut(s) 139
Cfr10I RCCGGY 4 cut(s) 4, 120, 139, 380
Cfr13I GGNCC 4 cut(s) 127, 265, 689, 742
Csp6I GTAC 5 cut(s) 61, 289, 430, 526, 598
CviAII CATG 5 cut(s) 227, 251, 292, 405, 634
CviQI GTAC 5 cut(s) 61, 289, 430, 526, 598
DdeI CTNAG 5 cut(s) 21, 164, 336, 438, 578
DpnI GATC 4 cut(s) 261, 632, 702, 732
DpnII GATC 4 cut(s) 259, 630, 700, 730
DrdI GACNNNNNNGTC 1 cut(s) 50
DseDI GACNNNNNNGTC 1 cut(s) 50
EaeI YGGCCR 3 cut(s) 92, 122, 141
EagI CGGCCG 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 450
EclXI CGGCCG 1 cut(s) 122
Eco130I CCWWGG 4 cut(s) 250, 404, 552, 790
Eco147I AGGCCT 1 cut(s) 215
Eco24I GRGCYC 2 cut(s) 337, 452
Eco47I GGWCC 1 cut(s) 265
Eco52I CGGCCG 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 450
EcoICRI GAGCTC 1 cut(s) 450
EcoNI CCTNNNNNAGG 1 cut(s) 725
EcoO109I RGGNCCY 1 cut(s) 742
EcoRII CCWGG 2 cut(s) 210, 582
EcoT14I CCWWGG 4 cut(s) 250, 404, 552, 790
EcoT38I GRGCYC 2 cut(s) 337, 452
ErhI CCWWGG 4 cut(s) 250, 404, 552, 790
FaeI CATG 5 cut(s) 230, 254, 295, 408, 637
FalI AAGNNNNNCTT 4 cut(s) 402, 434, 455, 487
FaqI GGGAC 1 cut(s) 588
FatI CATG 5 cut(s) 226, 250, 291, 404, 633
FauNDI CATATG 1 cut(s) 89
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 2 cut(s) 337, 452
Fsp4HI GCNGC 1 cut(s) 169
FspBI CTAG 1 cut(s) 369
GlaI GCGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 169
HaeIII GGCC 7 cut(s) 94, 124, 129, 143, 215, 691, 744
HapII CCGG 6 cut(s) 5, 121, 125, 140, 263, 381
HhaI GCGC 1 cut(s) 139
Hin1II CATG 5 cut(s) 230, 254, 295, 408, 637
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 2 cut(s) 208, 808
HindII GTYRAC 2 cut(s) 208, 808
HinfI GANTC 4 cut(s) 44, 196, 231, 626
HpaII CCGG 6 cut(s) 5, 121, 125, 140, 263, 381
HphI GGTGA 4 cut(s) 362, 370, 500, 827
Hpy166II GTNNAC 3 cut(s) 208, 247, 808
Hpy188I TCNGA 2 cut(s) 322, 339
Hpy188III TCNNGA 7 cut(s) 20, 187, 263, 284, 508, 634, 728
Hpy8I GTNNAC 3 cut(s) 208, 247, 808
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 6 cut(s) 87, 140, 337, 410, 611, 731
HpyCH4III ACNGT 5 cut(s) 362, 457, 530, 698, 778
HpyCH4IV ACGT 2 cut(s) 297, 482
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 185, 381
HpyF3I CTNAG 5 cut(s) 21, 164, 336, 438, 578
HpySE526I ACGT 2 cut(s) 297, 482
Hsp92II CATG 5 cut(s) 230, 254, 295, 408, 637
HspAI GCGC 1 cut(s) 137
Kpn2I TCCGGA 1 cut(s) 262
KroI GCCGGC 1 cut(s) 139
KroNI GCCGGC 1 cut(s) 141
Kzo9I GATC 4 cut(s) 259, 630, 700, 730
LmnI GCTCC 1 cut(s) 19
MaeI CTAG 1 cut(s) 369
MaeII ACGT 2 cut(s) 297, 482
MaeIII GTNAC 1 cut(s) 778
MalI GATC 4 cut(s) 261, 632, 702, 732
MboI GATC 4 cut(s) 259, 630, 700, 730
MboII GAAGA 2 cut(s) 226, 503
MhlI GDGCHC 2 cut(s) 337, 452
MlsI TGGCCA 1 cut(s) 94
MluNI TGGCCA 1 cut(s) 94
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 8 cut(s) 27, 161, 173, 248, 278, 333, 630, 702
Mox20I TGGCCA 1 cut(s) 94
MroI TCCGGA 1 cut(s) 262
MroNI GCCGGC 1 cut(s) 139
MroXI GAANNNNTTC 2 cut(s) 110, 625
MscI TGGCCA 1 cut(s) 94
MseI TTAA 3 cut(s) 390, 674, 835
MslI CAYNNNNRTG 1 cut(s) 296
Msp20I TGGCCA 1 cut(s) 94
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 6 cut(s) 5, 121, 125, 140, 263, 381
MspR9I CCNGG 3 cut(s) 126, 212, 584
MvaI CCWGG 2 cut(s) 212, 584
MvnI CGCG 2 cut(s) 137, 188
MwoI GCNNNNNNNGC 3 cut(s) 165, 185, 381
NaeI GCCGGC 1 cut(s) 141
NciI CCSGG 1 cut(s) 126
NcoI CCATGG 2 cut(s) 250, 404
NdeI CATATG 1 cut(s) 89
NdeII GATC 4 cut(s) 259, 630, 700, 730
NgoMIV GCCGGC 1 cut(s) 139
NlaIII CATG 5 cut(s) 230, 254, 295, 408, 637
NlaIV GGNNCC 2 cut(s) 9, 743
NruI TCGCGA 1 cut(s) 188
PagI TCATGA 1 cut(s) 633
PceI AGGCCT 1 cut(s) 215
PcsI WCGNNNNNNNCGW 1 cut(s) 621
PdiI GCCGGC 1 cut(s) 141
PdmI GAANNNNTTC 2 cut(s) 110, 625
PfeI GAWTC 3 cut(s) 196, 231, 626
PkrI GCNGC 1 cut(s) 170
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 452
Psp6I CCWGG 2 cut(s) 210, 582
PspGI CCWGG 2 cut(s) 210, 582
PspN4I GGNNCC 2 cut(s) 9, 743
PspPI GGNCC 4 cut(s) 127, 265, 689, 742
RruI TCGCGA 1 cut(s) 188
RsaI GTAC 5 cut(s) 62, 290, 431, 527, 599
RsaNI GTAC 5 cut(s) 61, 289, 430, 526, 598
RseI CAYNNNNRTG 1 cut(s) 296
SacI GAGCTC 1 cut(s) 452
SalI GTCGAC 1 cut(s) 206
SaqAI TTAA 3 cut(s) 390, 674, 835
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 4 cut(s) 259, 630, 700, 730
Sau96I GGNCC 4 cut(s) 127, 265, 689, 742
ScaI AGTACT 2 cut(s) 527, 599
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 3 cut(s) 126, 212, 584
SduI GDGCHC 2 cut(s) 337, 452
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 296
SseBI AGGCCT 1 cut(s) 215
SsiI CCGC 1 cut(s) 168
SspMI CTAG 1 cut(s) 369
SstI GAGCTC 1 cut(s) 452
StuI AGGCCT 1 cut(s) 215
StyD4I CCNGG 3 cut(s) 124, 210, 582
StyI CCWWGG 4 cut(s) 250, 404, 552, 790
TaaI ACNGT 5 cut(s) 362, 457, 530, 698, 778
TaiI ACGT 2 cut(s) 300, 485
TaqI TCGA 6 cut(s) 42, 147, 194, 207, 629, 759
TatI WGTACW 3 cut(s) 288, 525, 597
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 3 cut(s) 196, 231, 626
Tru1I TTAA 3 cut(s) 390, 674, 835
Tru9I TTAA 3 cut(s) 390, 674, 835
TscAI CASTG 2 cut(s) 684, 701
TspDTI ATGAA 4 cut(s) 76, 326, 554, 713
TspRI CASTG 2 cut(s) 684, 701
VpaK11BI GGWCC 1 cut(s) 265
XagI CCTNNNNNAGG 1 cut(s) 725
XcmI CCANNNNNNNNNTGG 1 cut(s) 559
XmiI GTMKAC 1 cut(s) 207
XmnI GAANNNNTTC 2 cut(s) 110, 625
XspI CTAG 1 cut(s) 369
ZrmI AGTACT 2 cut(s) 527, 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.