Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000462

Physical Location & Seq

Genomic Coordinates Reverse (-)

34332667 .. 34333355

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0238400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCTGCTTCTTCTTCTCCTTCTTCTTCATATGGTCATTGTTTCCAACATGATGTCTTCCTCAACTTTAGAGGTGACGACAGTCGCAGGACCTTTATCGGCCATCTTTACAAAGCTCTGGAACAGAAAGCACTCCACACCTTCATGGACTCTGAAGTGCTTAGAAAAGGTAACGATCTTTCGGAGCTACTGAAAGCCATCAACGACTCAAGGCTTTCGATTCTAGTTTTATCCGAAAACTATGCGTCTTCCACATGGTGCTTAAAAGAACTAGTGCAAATCCTGAAATGCATGGATATGCAGAAGCAGATTGTGATACCTATTTTCTATCAAGTAGATCCTTGTGATGTTCGTAAACTGAAGAGAAGTTTCGCTGAAGCTTTTGCCAAACATGAATCCAATTCTAATGCCGCTGACATGGAAGAGGTGGAGAGCTGGAAGTCCGCTTTAAGAACTATATATAACTTTCGACCATGGGACTTGTTTTGCTTGTCCCGCCATTGTATGGTGCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010228 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045544 GO:0046394 GO:0048366 GO:0048367 GO:0048572 GO:0048573 GO:0048575 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

171

Amino Acids

19.8

Weight (kDa)

7.64

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	17 - 155	1.7e-43	TIR domain
TIR_2	PF13676	19 - 120	2.8e-15	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca	FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica	MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica	Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis	pycom02g16160
rosa_chinensis	RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata	RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora	Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa	Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha	Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana	Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	505
AciI	CCGC	3 cut(s)	411, 444, 496
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	100
AcuI	CTGAAG	3 cut(s)	174, 380, 396
AdeI	CACNNNGTG	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	505
AhlI	ACTAGT	1 cut(s)	271
AluBI	AGCT	4 cut(s)	116, 187, 380, 435
AluI	AGCT	4 cut(s)	116, 187, 380, 435
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	90
BbsI	GAAGAC	2 cut(s)	49, 240
BccI	CCATC	2 cut(s)	111, 206
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BcuI	ACTAGT	1 cut(s)	271
BfaI	CTAG	2 cut(s)	224, 272
BisI	GCNGC	2 cut(s)	6, 411
BlsI	GCNGC	2 cut(s)	7, 412
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	90
BoxI	GACNNNNGTC	1 cut(s)	81
BpiI	GAAGAC	2 cut(s)	49, 240
BpuEI	CTTGAG	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
BseDI	CCNNGG	1 cut(s)	473
BseLI	CCNNNNNNNGG	1 cut(s)	505
BshFI	GGCC	1 cut(s)	102
BslFI	GGGAC	2 cut(s)	478, 491
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmFI	GGGAC	2 cut(s)	478, 491
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	175, 337
Bsp19I	CCATGG	1 cut(s)	473
BspACI	CCGC	3 cut(s)	411, 444, 496
BspANI	GGCC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	2 cut(s)	175, 337
BssT1I	CCWWGG	1 cut(s)	473
Bst4CI	ACNGT	1 cut(s)	83
Bst6I	CTCTTC	2 cut(s)	356, 417
BstDEI	CTNAG	1 cut(s)	161
BstDSI	CCRYGG	1 cut(s)	473
BstKTI	GATC	2 cut(s)	178, 340
BstMBI	GATC	2 cut(s)	175, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	495
BstPAI	GACNNNNGTC	1 cut(s)	81
BstV2I	GAAGAC	2 cut(s)	49, 240
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	473
Cfr13I	GGNCC	1 cut(s)	90
CseI	GACGC	1 cut(s)	234
CviAII	CATG	7 cut(s)	50, 145, 255, 292, 392, 418, 474
CviJI	RGCY	8 cut(s)	5, 102, 116, 187, 197, 214, 380, 435
CviKI_1	RGCY	8 cut(s)	5, 102, 116, 187, 197, 214, 380, 435
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	2 cut(s)	177, 339
DpnII	GATC	2 cut(s)	175, 337
DraIII	CACNNNGTG	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	356, 417
EarI	CTCTTC	2 cut(s)	356, 417
Eco130I	CCWWGG	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	90
Eco57I	CTGAAG	3 cut(s)	174, 380, 396
EcoO109I	RGGNCCY	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	473
EcoT22I	ATGCAT	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	7 cut(s)	53, 148, 258, 295, 395, 421, 477
FaqI	GGGAC	2 cut(s)	478, 491
FatI	CATG	7 cut(s)	49, 144, 254, 291, 391, 417, 473
FauI	CCCGC	1 cut(s)	503
FauNDI	CATATG	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	6, 411
Fsp4HI	GCNGC	2 cut(s)	6, 411
FspBI	CTAG	2 cut(s)	224, 272
GluI	GCNGC	2 cut(s)	6, 411
HaeIII	GGCC	1 cut(s)	102
HgaI	GACGC	1 cut(s)	234
Hin1II	CATG	7 cut(s)	53, 148, 258, 295, 395, 421, 477
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	4 cut(s)	149, 206, 220, 395
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	3 cut(s)	154, 184, 235
Hpy188III	TCNNGA	2 cut(s)	119, 283
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	2 cut(s)	30, 151
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4V	TGCA	3 cut(s)	277, 291, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	495
HpyF3I	CTNAG	1 cut(s)	161
Hsp92II	CATG	7 cut(s)	53, 148, 258, 295, 395, 421, 477
Kzo9I	GATC	2 cut(s)	175, 337
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	4 cut(s)	73, 104, 296, 421
MaeI	CTAG	2 cut(s)	224, 272
MaeIII	GTNAC	2 cut(s)	74, 170
MalI	GATC	2 cut(s)	177, 339
MboI	GATC	2 cut(s)	175, 337
MboII	GAAGA	8 cut(s)	3, 6, 15, 18, 49, 240, 373, 434
MflI	RGATCY	1 cut(s)	337
MluCI	AATT	1 cut(s)	400
MlyI	GAGTC	2 cut(s)	143, 200
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	3 cut(s)	65, 71, 418
Mph1103I	ATGCAT	1 cut(s)	293
MseI	TTAA	2 cut(s)	263, 449
MslI	CAYNNNNRTG	2 cut(s)	143, 296
MspA1I	CMGCKG	1 cut(s)	413
MwoI	GCNNNNNNNGC	1 cut(s)	495
NcoI	CCATGG	1 cut(s)	473
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	2 cut(s)	175, 337
NlaIII	CATG	7 cut(s)	53, 148, 258, 295, 395, 421, 477
NmuCI	GTSAC	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	220, 395
PflMI	CCANNNNNTGG	1 cut(s)	505
PkrI	GCNGC	2 cut(s)	7, 412
PleI	GAGTC	2 cut(s)	143, 200
PpsI	GAGTC	2 cut(s)	143, 200
PpuMI	RGGWCCY	1 cut(s)	90
PshAI	GACNNNNGTC	1 cut(s)	81
Psp5II	RGGWCCY	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	90
PspPPI	RGGWCCY	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	337
RseI	CAYNNNNRTG	2 cut(s)	143, 296
SaqAI	TTAA	2 cut(s)	263, 449
SatI	GCNGC	2 cut(s)	6, 411
Sau3AI	GATC	2 cut(s)	175, 337
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	2 cut(s)	143, 200
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	2 cut(s)	143, 296
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
SpeI	ACTAGT	1 cut(s)	271
Sse9I	AATT	1 cut(s)	400
SsiI	CCGC	3 cut(s)	411, 444, 496
SspMI	CTAG	2 cut(s)	224, 272
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	1 cut(s)	83
TaqI	TCGA	2 cut(s)	218, 469
TasI	AATT	1 cut(s)	400
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	2 cut(s)	220, 395
Tru1I	TTAA	2 cut(s)	263, 449
Tru9I	TTAA	2 cut(s)	263, 449
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	3 cut(s)	18, 133, 408
Van91I	CCANNNNNTGG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	90
XspI	CTAG	2 cut(s)	224, 272
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.