Rorug01G0394200

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
50449105 .. 50452257
3153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0394200.1

Sequence Viewer

Length: 1143 bp
ATGCCTTGCGCTTTAGCGGTACCAAACTCTCCGATCTTCTCACCGTCGAAAATTCCGTCCATTTTCTGCCGGTCATCTCCTTCTTCATGTTCTTCTCCTAGAGTACTTCTCCATGGTCCACCTCCAACGCCGTCGTCACGGTCCAACAACCCACTTTCGTCGCCGAAGGCTTTCCCGGCAAGGTTTCAGAGTCAGAGGCATGTGATTAGTAACTGCAAGAAGGAGCCGTCGGGTTTGGGCTCGGGTCCGGCTTTGGCTTTGAAGAGGAAGAGGCCGATGAGGATTGATATTCCGGCTGCGCCGGTGAGTTTCGGCGTTGACTCGCCGAAGGTTGAGGAGAGAGTGGAGGCGGTGGAGGTTGACGAAGATGGATACTCGGTTTACTGTAAGAGAGGGAAACGAGGTCTCATGGAGGATCGGTACTCCGCCGTGGTTGATCTTCATGATAATACCAGACAGGCGTTCTTTGGTGTGTTTGATGGGCATGGAGGTTCAAAGGCAGCTGAATTTGCAGCAAAGAACTTGGATAAGAACATCGTGGGTCGTTTGGCGAGCGGAGGAGAAGAGAAGGTCATGGAAGCAGTGAAAGATGGTTATTTGGAGACTGATGTTGAGTTTTTGAAGGAGGATGTTAGTGGTGGTGCTTGCTGTGTGACTGCGTTGGTACAGAAAGGTAATCTGGTGGTGTCGAATGCTGGTGATTGCCGCGCTGTTATGAGCCGAGGAGGGGTTGCTGAGGCCCTTACGTCTGATCATCATCCTTGTAGAACAGATGAAAGAGCCAGAATTGAAAGCTCGGGTGGTTATGTGGATTGTTGCCGCGGTGTTTGGAGAATACAAGGGTCTCTTGCTGTTTCAAGAGGAATTGGAGATCGACAGCTAAAGCAGTGGGTTATAGCAGAACCAGAGACTCAAGTCCTAAAAATAAATCCTGAATGCGAGTTCTTAATGTTAGCTTCTGACGGTCTTTGGGACAAGGTTACTAATCAAGAGGCAGTTGACGAAGTTCGCCCTCTATGCGTTGGAATTGATAAGCCAGAGCTGTTTTCTGCTTGTAAAAAGCTTGTTGATCTTTCAATAAGTAGAGGTTCCATGGACGATACAAGCGTGATGATAATCCAATTAGGCCGTTTTGTTTCGTAA

Protein Analysis

380

Amino Acids

41.04

Weight (kDa)

6.98

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 126 - 367 2.1e-57 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis pycom02g16160
rosa_chinensis RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 19
AccBSI CCGCTC 1 cut(s) 555
AccII CGCG 2 cut(s) 708, 822
AciI CCGC 7 cut(s) 17, 350, 426, 555, 706, 820, 822
AclWI GGATC 1 cut(s) 423
AcsI RAATTY 2 cut(s) 51, 506
AfaI GTAC 4 cut(s) 21, 105, 422, 666
AfiI CCNNNNNNNGG 1 cut(s) 727
AgsI TTSAA 6 cut(s) 262, 495, 622, 791, 858, 1077
AluBI AGCT 6 cut(s) 503, 795, 880, 956, 1042, 1063
AluI AGCT 6 cut(s) 503, 795, 880, 956, 1042, 1063
Alw26I GTCTC 4 cut(s) 410, 596, 849, 902
AlwI GGATC 1 cut(s) 423
Ama87I CYCGRG 2 cut(s) 241, 796
AoxI GGCC 3 cut(s) 272, 738, 1126
ApeKI GCWGC 3 cut(s) 296, 500, 512
ApoI RAATTY 2 cut(s) 51, 506
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
Asp700I GAANNNNTTC 1 cut(s) 170
Asp718I GGTACC 1 cut(s) 19
AspLEI GCGC 3 cut(s) 11, 301, 710
AspS9I GGNCC 4 cut(s) 116, 141, 245, 739
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 3 cut(s) 33, 316, 710
AvaI CYCGRG 2 cut(s) 241, 796
AvaII GGWCC 3 cut(s) 116, 141, 245
BaeI ACNNNNGTAYC 2 cut(s) 1092, 1125
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 242
BbvCI CCTCAGC 1 cut(s) 735
BbvI GCAGC 3 cut(s) 283, 512, 524
BccI CCATC 3 cut(s) 362, 473, 584
BceAI ACGGC 4 cut(s) 115, 211, 413, 1113
BciVI GTATCC 1 cut(s) 365
BclI TGATCA 1 cut(s) 751
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 4 cut(s) 410, 596, 849, 902
BfaI CTAG 1 cut(s) 99
BfuI GTATCC 1 cut(s) 365
BisI GCNGC 5 cut(s) 297, 501, 513, 706, 820
BlsI GCNGC 5 cut(s) 298, 502, 514, 707, 821
BmcAI AGTACT 1 cut(s) 105
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 3 cut(s) 116, 141, 245
BmeT110I CYCGRG 2 cut(s) 241, 796
BmgT120I GGNCC 4 cut(s) 116, 141, 245, 739
BmiI GGNNCC 4 cut(s) 21, 225, 246, 1090
BmrFI CCNGG 1 cut(s) 176
BoxI GACNNNNGTC 1 cut(s) 914
BplI GAGNNNNNCTC 2 cut(s) 93, 125
Bpu10I CCTNAGC 1 cut(s) 735
BpuEI CTTGAG 1 cut(s) 897
BpuMI CCSGG 1 cut(s) 176
BsaBI GATNNNNATC 2 cut(s) 756, 1115
BsaI GGTCTC 2 cut(s) 410, 849
BsaJI CCNNGG 5 cut(s) 112, 429, 721, 820, 1092
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 1 cut(s) 727
Bse118I RCCGGY 2 cut(s) 69, 301
Bse8I GATNNNNATC 2 cut(s) 756, 1115
BseDI CCNNGG 5 cut(s) 112, 429, 721, 820, 1092
BseGI GGATG 2 cut(s) 634, 757
BseJI GATNNNNATC 2 cut(s) 756, 1115
BseLI CCNNNNNNNGG 1 cut(s) 727
BseMII CTCAG 1 cut(s) 726
BseRI GAGGAG 3 cut(s) 350, 573, 738
BseXI GCAGC 3 cut(s) 283, 512, 524
Bsh1236I CGCG 2 cut(s) 708, 822
BshFI GGCC 3 cut(s) 274, 740, 1128
BshNI GGYRCC 1 cut(s) 19
BsiHKCI CYCGRG 2 cut(s) 241, 796
BsiSI CCGG 5 cut(s) 70, 176, 248, 293, 302
BslFI GGGAC 1 cut(s) 986
BslI CCNNNNNNNGG 1 cut(s) 727
BsmAI GTCTC 4 cut(s) 410, 596, 849, 902
BsmFI GGGAC 1 cut(s) 986
BsmI GAATGC 2 cut(s) 697, 941
BsnI GGCC 3 cut(s) 274, 740, 1128
Bso31I GGTCTC 2 cut(s) 410, 849
BsoBI CYCGRG 2 cut(s) 241, 796
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 6 cut(s) 33, 415, 436, 751, 871, 1069
Bsp19I CCATGG 2 cut(s) 112, 1092
BspACI CCGC 7 cut(s) 17, 350, 426, 555, 706, 820, 822
BspANI GGCC 3 cut(s) 274, 740, 1128
BspCNI CTCAG 1 cut(s) 727
BspFNI CGCG 2 cut(s) 708, 822
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 4 cut(s) 21, 225, 246, 1090
BspPI GGATC 1 cut(s) 423
BspT107I GGYRCC 1 cut(s) 19
BspTNI GGTCTC 2 cut(s) 410, 849
BsrBI CCGCTC 1 cut(s) 555
BsrFI RCCGGY 2 cut(s) 69, 301
BssAI RCCGGY 2 cut(s) 69, 301
BssECI CCNNGG 5 cut(s) 112, 429, 721, 820, 1092
BssMI GATC 6 cut(s) 33, 415, 436, 751, 871, 1069
BssT1I CCWWGG 2 cut(s) 112, 1092
Bst4CI ACNGT 4 cut(s) 45, 141, 386, 965
Bst6I CTCTTC 3 cut(s) 257, 263, 558
BstC8I GCNNGC 2 cut(s) 553, 646
BstDEI CTNAG 1 cut(s) 735
BstDSI CCRYGG 4 cut(s) 112, 429, 820, 1092
BstF5I GGATG 2 cut(s) 634, 757
BstFNI CGCG 2 cut(s) 708, 822
BstHHI GCGC 3 cut(s) 11, 301, 710
BstKTI GATC 6 cut(s) 36, 418, 439, 754, 874, 1072
BstMAI GTCTC 4 cut(s) 410, 596, 849, 902
BstMBI GATC 6 cut(s) 33, 415, 436, 751, 871, 1069
BstMWI GCNNNNNNNGC 3 cut(s) 176, 509, 1017
BstNSI RCATGY 1 cut(s) 203
BstPAI GACNNNNGTC 1 cut(s) 914
BstSCI CCNGG 1 cut(s) 174
BstUI CGCG 2 cut(s) 708, 822
BstV1I GCAGC 3 cut(s) 283, 512, 524
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 3 cut(s) 274, 740, 1128
BtgI CCRYGG 4 cut(s) 112, 429, 820, 1092
BtsCI GGATG 2 cut(s) 634, 757
BtsI GCAGTG 2 cut(s) 588, 893
BtsIMutI CAGTG 2 cut(s) 588, 893
Cac8I GCNNGC 2 cut(s) 553, 646
CciI TCATGA 1 cut(s) 442
CfoI GCGC 3 cut(s) 11, 301, 710
Cfr10I RCCGGY 2 cut(s) 69, 301
Cfr13I GGNCC 4 cut(s) 116, 141, 245, 739
Cfr42I CCGCGG 1 cut(s) 823
Csp6I GTAC 4 cut(s) 20, 104, 421, 665
CviAII CATG 8 cut(s) 87, 113, 200, 409, 443, 485, 574, 1093
CviQI GTAC 4 cut(s) 20, 104, 421, 665
DdeI CTNAG 1 cut(s) 735
DpnI GATC 6 cut(s) 35, 417, 438, 753, 873, 1071
DpnII GATC 6 cut(s) 33, 415, 436, 751, 871, 1069
Eam1104I CTCTTC 3 cut(s) 257, 263, 558
EarI CTCTTC 3 cut(s) 257, 263, 558
EciI GGCGGA 1 cut(s) 415
Eco130I CCWWGG 2 cut(s) 112, 1092
Eco24I GRGCYC 1 cut(s) 242
Eco31I GGTCTC 2 cut(s) 410, 849
Eco47I GGWCC 3 cut(s) 116, 141, 245
Eco88I CYCGRG 2 cut(s) 241, 796
EcoO109I RGGNCCY 1 cut(s) 739
EcoT14I CCWWGG 2 cut(s) 112, 1092
EcoT38I GRGCYC 1 cut(s) 242
ErhI CCWWGG 2 cut(s) 112, 1092
FaeI CATG 8 cut(s) 90, 116, 203, 412, 446, 488, 577, 1096
FalI AAGNNNNNCTT 2 cut(s) 831, 863
FaqI GGGAC 1 cut(s) 986
FatI CATG 8 cut(s) 86, 112, 199, 408, 442, 484, 573, 1092
FbaI TGATCA 1 cut(s) 751
Fnu4HI GCNGC 5 cut(s) 297, 501, 513, 706, 820
FokI GGATG 2 cut(s) 641, 744
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 5 cut(s) 297, 501, 513, 706, 820
FspBI CTAG 1 cut(s) 99
GlaI GCGC 3 cut(s) 10, 300, 709
GluI GCNGC 5 cut(s) 297, 501, 513, 706, 820
HaeIII GGCC 3 cut(s) 274, 740, 1128
HapII CCGG 5 cut(s) 70, 176, 248, 293, 302
HhaI GCGC 3 cut(s) 11, 301, 710
Hin1II CATG 8 cut(s) 90, 116, 203, 412, 446, 488, 577, 1096
Hin6I GCGC 3 cut(s) 9, 299, 708
HinP1I GCGC 3 cut(s) 9, 299, 708
HincII GTYRAC 3 cut(s) 319, 361, 1000
HindII GTYRAC 3 cut(s) 319, 361, 1000
HindIII AAGCTT 1 cut(s) 1061
HinfI GANTC 3 cut(s) 190, 320, 910
HpaII CCGG 5 cut(s) 70, 176, 248, 293, 302
HphI GGTGA 3 cut(s) 33, 316, 710
Hpy166II GTNNAC 5 cut(s) 119, 319, 361, 382, 1000
Hpy188I TCNGA 5 cut(s) 33, 189, 195, 751, 961
Hpy188III TCNNGA 4 cut(s) 443, 858, 932, 989
Hpy8I GTNNAC 5 cut(s) 119, 319, 361, 382, 1000
Hpy99I CGWCG 4 cut(s) 49, 136, 163, 232
HpyAV CCTTC 6 cut(s) 90, 160, 214, 322, 562, 616
HpyCH4III ACNGT 4 cut(s) 45, 141, 386, 965
HpyCH4IV ACGT 1 cut(s) 746
HpyCH4V TGCA 2 cut(s) 216, 512
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 509, 1017
HpyF3I CTNAG 1 cut(s) 735
HpySE526I ACGT 1 cut(s) 746
Hsp92II CATG 8 cut(s) 90, 116, 203, 412, 446, 488, 577, 1096
HspAI GCGC 3 cut(s) 9, 299, 708
KpnI GGTACC 1 cut(s) 23
Ksp22I TGATCA 1 cut(s) 751
KspI CCGCGG 1 cut(s) 823
Kzo9I GATC 6 cut(s) 33, 415, 436, 751, 871, 1069
LmnI GCTCC 1 cut(s) 223
Lsp1109I GCAGC 3 cut(s) 283, 512, 524
MaeI CTAG 1 cut(s) 99
MaeII ACGT 1 cut(s) 746
MaeIII GTNAC 4 cut(s) 135, 209, 652, 979
MalI GATC 6 cut(s) 35, 417, 438, 753, 873, 1071
MbiI CCGCTC 1 cut(s) 555
MboI GATC 6 cut(s) 33, 415, 436, 751, 871, 1069
MboII GAAGA 8 cut(s) 28, 75, 84, 274, 280, 377, 431, 575
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 6 cut(s) 51, 506, 786, 864, 1026, 1121
MlyI GAGTC 3 cut(s) 199, 314, 904
MmeI TCCRAC 3 cut(s) 149, 168, 1003
MroXI GAANNNNTTC 1 cut(s) 170
MseI TTAA 1 cut(s) 947
MspA1I CMGCKG 2 cut(s) 503, 822
MspI CCGG 5 cut(s) 70, 176, 248, 293, 302
MspR9I CCNGG 1 cut(s) 176
Mva1269I GAATGC 2 cut(s) 697, 941
MvnI CGCG 2 cut(s) 708, 822
MwoI GCNNNNNNNGC 3 cut(s) 176, 509, 1017
NciI CCSGG 1 cut(s) 176
NcoI CCATGG 2 cut(s) 112, 1092
NdeII GATC 6 cut(s) 33, 415, 436, 751, 871, 1069
NlaIII CATG 8 cut(s) 90, 116, 203, 412, 446, 488, 577, 1096
NlaIV GGNNCC 4 cut(s) 21, 225, 246, 1090
NmeAIII GCCGAG 1 cut(s) 746
NmuCI GTSAC 2 cut(s) 135, 652
NspI RCATGY 1 cut(s) 203
PagI TCATGA 1 cut(s) 442
PcsI WCGNNNNNNNCGW 2 cut(s) 53, 1104
PctI GAATGC 2 cut(s) 697, 941
PdmI GAANNNNTTC 1 cut(s) 170
PkrI GCNGC 5 cut(s) 298, 502, 514, 707, 821
PleI GAGTC 3 cut(s) 198, 314, 904
PpsI GAGTC 3 cut(s) 198, 314, 904
PshAI GACNNNNGTC 1 cut(s) 914
PspN4I GGNNCC 4 cut(s) 21, 225, 246, 1090
PspPI GGNCC 4 cut(s) 116, 141, 245, 739
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 4 cut(s) 21, 105, 422, 666
RsaNI GTAC 4 cut(s) 20, 104, 421, 665
SacII CCGCGG 1 cut(s) 823
SaqAI TTAA 1 cut(s) 947
SatI GCNGC 5 cut(s) 297, 501, 513, 706, 820
Sau3AI GATC 6 cut(s) 33, 415, 436, 751, 871, 1069
Sau96I GGNCC 4 cut(s) 116, 141, 245, 739
ScaI AGTACT 1 cut(s) 105
SchI GAGTC 3 cut(s) 199, 314, 904
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 242
Sfr303I CCGCGG 1 cut(s) 823
SgrAI CRCCGGYG 1 cut(s) 301
SgrBI CCGCGG 1 cut(s) 823
SinI GGWCC 3 cut(s) 116, 141, 245
SmlI CTYRAG 1 cut(s) 912
SmoI CTYRAG 1 cut(s) 912
Sse9I AATT 6 cut(s) 51, 506, 786, 864, 1026, 1121
SsiI CCGC 7 cut(s) 17, 350, 426, 555, 706, 820, 822
SspMI CTAG 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 174
StyI CCWWGG 2 cut(s) 112, 1092
TaaI ACNGT 4 cut(s) 45, 141, 386, 965
TaiI ACGT 1 cut(s) 749
TaqI TCGA 3 cut(s) 47, 689, 874
TasI AATT 6 cut(s) 51, 506, 786, 864, 1026, 1121
TatI WGTACW 1 cut(s) 103
TauI GCSGC 2 cut(s) 708, 822
Tru1I TTAA 1 cut(s) 947
Tru9I TTAA 1 cut(s) 947
TscAI CASTG 2 cut(s) 588, 893
TseFI GTSAC 2 cut(s) 135, 652
TseI GCWGC 3 cut(s) 296, 500, 512
Tsp45I GTSAC 2 cut(s) 135, 652
TspDTI ATGAA 3 cut(s) 75, 431, 789
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 2 cut(s) 588, 893
VpaK11BI GGWCC 3 cut(s) 116, 141, 245
XapI RAATTY 2 cut(s) 51, 506
XceI RCATGY 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 1 cut(s) 99
ZrmI AGTACT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.