Rorug01G0219100

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
31308472 .. 31312561
4090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0219100.1

Sequence Viewer

Length: 1308 bp
ATGGCAGAGATGACTTCACAAATGAATGAAATAAGTGTTCACGTTGAGCGCACTGAACCAGAACCAGTCTTGGACGAGTGGTGTATCTACAGGGTTCCCAGCAAACTCCGCAATGTAAATAAAGCATCTTACACTCCTCAATTACTTTCGATAGGCCCTTTCCACTACGGCAGTCCAAAACTGAAGGACATGGAAAGCCATAAACAGAAATATTATGAGAAATTTCTCAAACACTGTTCAAAGGATGAGGCTGTACTGAAACGGTTCGTCAACCAACATTTGGACAGAATTCTTAGTTGTTATGCAGGTACCATTGAGTGCAGAGGCAACATTATCAACGTGATTCTAGTTGATGCTTGCTTCATCATTGAACTGTTTATGACAGACTCTGAAACAGAAAATCATCACATACTGAGGTCACCTTGGATGAGGAAAGCTGTAGAGAAAGACTTAATACTGTTTGAAAATCAGATTCCTTATTTTTTTCTTGAAGAGCTTTATGACTTTGCCATTTCCAGTCGTGATTCTATTGTGGAACCTGAGATTGCCGTCCATCCTCAACCTGTTCAGCATCAATTTCTAACCCTTGCCTGTAAGTTCTTTGAAGAATATTACAGGAAGAAAAGACCTCTCAGGAATGGAATAAACCTGAAACATTTCACTGATTTGGTAAGACATTTTGTTTGTACAGACAAAGTGACAGGTGACTTTATTAGTAACCAAAAGAAATGTAAATATGATGTAAGAAAGCTTAAGGCAGCAGGGGTAAAGTTTACACATCTTGCAGAACCCTTTGTCATAGAGCCTTTGTCAACAGGGGTTAACAGCTATATATCCAAGTTAGCAGGTCTTACAACTAAGGAGTTGAAGCTTACACGATTCTGGGCAACGTATGATGCAGAAAGCGTCATAAGAAACATTATGGCCTTGGAACAGCTCATCTACCCAAAACAGGCTTATATTTGCAGCTATTTTTTGCTACTTAGTCAGCTTGTCAACACTGTGGAAGACATAGATTTGCTGATCAAGGACGGAGTGGTTGAGAACTTGCTAGGCAGCAACAAATCGGTGGAAAAGCTTATTAACTCATTCTGCGTGCACATTGTGGAGGAAATATCCTGCTATTCGGATATCTATGACCAGCTTAATGAGCACTATAAGACGAGTTTAGGCAATCGCCGTATGGCAACCCTGAAACAAGTTTACTTCAAGGATCTTTGGACAGGCAGTGCAACTATACTTGGACTGGTTGTCCTGGTTTTCTCAATCATTGCTACCATCAAGTCGCTCACCTATCATAAGCGTTAG

Protein Analysis

435

Amino Acids

50.47

Weight (kDa)

7.92

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 29 - 421 1.2e-83 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis pycom02g16160
rosa_chinensis RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 296, 836
Acc65I GGTACC 1 cut(s) 308
AccB1I GGYRCC 1 cut(s) 308
AccB7I CCANNNNNTGG 1 cut(s) 280
AciI CCGC 1 cut(s) 109
AclWI GGATC 1 cut(s) 1221
AcsI RAATTY 2 cut(s) 221, 288
AcuI CTGAAG 1 cut(s) 203
AdeI CACNNNGTG 1 cut(s) 1105
AfaI GTAC 3 cut(s) 255, 310, 688
AfiI CCNNNNNNNGG 2 cut(s) 280, 952
AflII CTTAAG 1 cut(s) 752
AgsI TTSAA 7 cut(s) 240, 371, 464, 491, 605, 868, 1210
AhdI GACNNNNNGTC 1 cut(s) 1250
AjnI CCWGG 1 cut(s) 1254
Alw21I GWGCWC 2 cut(s) 1101, 1155
Alw44I GTGCAC 1 cut(s) 1097
AlwI GGATC 1 cut(s) 1221
AlwNI CAGNNNCTG 1 cut(s) 389
AoxI GGCC 2 cut(s) 154, 924
ApaLI GTGCAC 1 cut(s) 1097
ApeKI GCWGC 3 cut(s) 758, 966, 1056
ApoI RAATTY 2 cut(s) 221, 288
ArsI GACNNNNNNTTYG 2 cut(s) 666, 698
Asp700I GAANNNNTTC 2 cut(s) 263, 656
Asp718I GGTACC 1 cut(s) 308
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 3 cut(s) 411, 716, 1282
BaeGI GKGCMC 1 cut(s) 1101
BanI GGYRCC 1 cut(s) 308
BbsI GAAGAC 1 cut(s) 1014
Bbv12I GWGCWC 2 cut(s) 1101, 1155
BbvI GCAGC 3 cut(s) 770, 978, 1068
BccI CCATC 2 cut(s) 561, 1286
BceAI ACGGC 3 cut(s) 184, 533, 1164
BciT130I CCWGG 1 cut(s) 1256
BclI TGATCA 1 cut(s) 1023
BfaI CTAG 2 cut(s) 347, 1052
BfmI CTRYAG 2 cut(s) 88, 438
BfrI CTTAAG 1 cut(s) 752
BfuAI ACCTGC 2 cut(s) 296, 836
BisI GCNGC 3 cut(s) 759, 967, 1057
BlsI GCNGC 3 cut(s) 760, 968, 1058
Bme1390I CCNGG 1 cut(s) 1256
BmeRI GACNNNNNGTC 1 cut(s) 1250
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 3 cut(s) 96, 310, 537
BmrFI CCNGG 1 cut(s) 1256
BmsI GCATC 4 cut(s) 134, 343, 580, 886
BpiI GAAGAC 1 cut(s) 1014
BsaJI CCNNGG 2 cut(s) 422, 927
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 952
Bse1I ACTGG 3 cut(s) 65, 516, 1251
Bse3DI GCAATG 2 cut(s) 118, 1269
BseBI CCWGG 1 cut(s) 1256
BseDI CCNNGG 2 cut(s) 422, 927
BseGI GGATG 3 cut(s) 250, 432, 553
BseLI CCNNNNNNNGG 2 cut(s) 280, 952
BseMI GCAATG 2 cut(s) 118, 1269
BseMII CTCAG 3 cut(s) 404, 531, 646
BseNI ACTGG 3 cut(s) 65, 516, 1251
BseRI GAGGAG 1 cut(s) 126
BseSI GKGCMC 1 cut(s) 1101
BseXI GCAGC 3 cut(s) 770, 978, 1068
BseYI CCCAGC 1 cut(s) 98
BsgI GTGCAG 1 cut(s) 340
BshFI GGCC 2 cut(s) 156, 926
BshNI GGYRCC 1 cut(s) 308
BsiHKAI GWGCWC 2 cut(s) 1101, 1155
BslI CCNNNNNNNGG 2 cut(s) 280, 952
BsnI GGCC 2 cut(s) 156, 926
Bsp1286I GDGCHC 2 cut(s) 1101, 1155
Bsp1407I TGTACA 1 cut(s) 686
Bsp143I GATC 2 cut(s) 1023, 1213
BspACI CCGC 1 cut(s) 109
BspANI GGCC 2 cut(s) 156, 926
BspCNI CTCAG 3 cut(s) 405, 532, 645
BspLI GGNNCC 3 cut(s) 96, 310, 537
BspMI ACCTGC 2 cut(s) 296, 836
BspPI GGATC 1 cut(s) 1221
BspQI GCTCTTC 1 cut(s) 486
BspT107I GGYRCC 1 cut(s) 308
BspTI CTTAAG 1 cut(s) 752
BsrDI GCAATG 2 cut(s) 118, 1269
BsrGI TGTACA 1 cut(s) 686
BsrI ACTGG 3 cut(s) 65, 516, 1251
BssECI CCNNGG 2 cut(s) 422, 927
BssMI GATC 2 cut(s) 1023, 1213
BssT1I CCWWGG 2 cut(s) 422, 927
Bst2UI CCWGG 1 cut(s) 1256
Bst4CI ACNGT 5 cut(s) 236, 264, 375, 459, 1003
Bst6I CTCTTC 1 cut(s) 486
BstAFI CTTAAG 1 cut(s) 752
BstAUI TGTACA 1 cut(s) 686
BstC8I GCNNGC 2 cut(s) 358, 1097
BstDEI CTNAG 6 cut(s) 293, 413, 540, 632, 858, 983
BstEII GGTNACC 1 cut(s) 417
BstF5I GGATG 3 cut(s) 250, 432, 553
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 2 cut(s) 1026, 1216
BstMBI GATC 2 cut(s) 1023, 1213
BstMWI GCNNNNNNNGC 2 cut(s) 108, 1150
BstNI CCWGG 1 cut(s) 1256
BstPI GGTNACC 1 cut(s) 417
BstSCI CCNGG 1 cut(s) 1254
BstSFI CTRYAG 2 cut(s) 88, 438
BstSLI GKGCMC 1 cut(s) 1101
BstV1I GCAGC 3 cut(s) 770, 978, 1068
BstV2I GAAGAC 1 cut(s) 1014
BstX2I RGATCY 1 cut(s) 1213
BstYI RGATCY 1 cut(s) 1213
BsuRI GGCC 2 cut(s) 156, 926
BtsCI GGATG 3 cut(s) 250, 432, 553
BtsI GCAGTG 1 cut(s) 1234
BtsIMutI CAGTG 5 cut(s) 51, 232, 660, 999, 1234
BveI ACCTGC 2 cut(s) 296, 836
Cac8I GCNNGC 2 cut(s) 358, 1097
CaiI CAGNNNCTG 1 cut(s) 389
CfoI GCGC 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 155
CseI GACGC 1 cut(s) 895
Csp6I GTAC 3 cut(s) 254, 309, 687
CviAII CATG 1 cut(s) 190
CviQI GTAC 3 cut(s) 254, 309, 687
DdeI CTNAG 6 cut(s) 293, 413, 540, 632, 858, 983
DpnI GATC 2 cut(s) 1025, 1215
DpnII GATC 2 cut(s) 1023, 1213
DraIII CACNNNGTG 1 cut(s) 1105
DriI GACNNNNNGTC 1 cut(s) 1250
Eam1104I CTCTTC 1 cut(s) 486
Eam1105I GACNNNNNGTC 1 cut(s) 1250
EarI CTCTTC 1 cut(s) 486
Eco130I CCWWGG 2 cut(s) 422, 927
Eco32I GATATC 1 cut(s) 1132
Eco57I CTGAAG 1 cut(s) 203
Eco91I GGTNACC 1 cut(s) 417
EcoO109I RGGNCCY 1 cut(s) 155
EcoO65I GGTNACC 1 cut(s) 417
EcoRI GAATTC 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 1254
EcoRV GATATC 1 cut(s) 1132
EcoT14I CCWWGG 2 cut(s) 422, 927
ErhI CCWWGG 2 cut(s) 422, 927
FaeI CATG 1 cut(s) 193
FatI CATG 1 cut(s) 189
FbaI TGATCA 1 cut(s) 1023
Fnu4HI GCNGC 3 cut(s) 759, 967, 1057
FokI GGATG 3 cut(s) 257, 439, 540
Fsp4HI GCNGC 3 cut(s) 759, 967, 1057
FspBI CTAG 2 cut(s) 347, 1052
GlaI GCGC 1 cut(s) 50
GluI GCNGC 3 cut(s) 759, 967, 1057
GsaI CCCAGC 1 cut(s) 102
HaeIII GGCC 2 cut(s) 156, 926
HgaI GACGC 1 cut(s) 895
HhaI GCGC 1 cut(s) 51
Hin1II CATG 1 cut(s) 193
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HincII GTYRAC 4 cut(s) 271, 813, 823, 997
HindII GTYRAC 4 cut(s) 271, 813, 823, 997
HindIII AAGCTT 3 cut(s) 749, 869, 1076
HinfI GANTC 5 cut(s) 343, 386, 472, 524, 879
HpaI GTTAAC 1 cut(s) 823
HphI GGTGA 3 cut(s) 411, 716, 1282
Hpy166II GTNNAC 8 cut(s) 40, 271, 774, 813, 823, 997, 1099, 1204
Hpy188I TCNGA 3 cut(s) 391, 471, 1129
Hpy188III TCNNGA 3 cut(s) 488, 521, 634
Hpy8I GTNNAC 8 cut(s) 40, 271, 774, 813, 823, 997, 1099, 1204
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 5 cut(s) 236, 264, 375, 459, 1003
HpyCH4IV ACGT 3 cut(s) 42, 339, 890
HpyCH4V TGCA 7 cut(s) 305, 321, 785, 899, 966, 1099, 1232
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 1150
HpyF3I CTNAG 6 cut(s) 293, 413, 540, 632, 858, 983
HpySE526I ACGT 3 cut(s) 42, 339, 890
Hsp92II CATG 1 cut(s) 193
HspAI GCGC 1 cut(s) 49
KpnI GGTACC 1 cut(s) 312
Ksp22I TGATCA 1 cut(s) 1023
KspAI GTTAAC 1 cut(s) 823
Kzo9I GATC 2 cut(s) 1023, 1213
LguI GCTCTTC 1 cut(s) 486
Lsp1109I GCAGC 3 cut(s) 770, 978, 1068
LweI GCATC 4 cut(s) 134, 343, 580, 886
MaeI CTAG 2 cut(s) 347, 1052
MaeII ACGT 3 cut(s) 42, 339, 890
MaeIII GTNAC 4 cut(s) 417, 697, 704, 716
MalI GATC 2 cut(s) 1025, 1215
MboI GATC 2 cut(s) 1023, 1213
MboII GAAGA 4 cut(s) 503, 617, 631, 1019
MflI RGATCY 1 cut(s) 1213
MhlI GDGCHC 2 cut(s) 1101, 1155
MluCI AATT 4 cut(s) 140, 221, 288, 575
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 8 cut(s) 147, 241, 317, 408, 423, 567, 639, 1102
MroXI GAANNNNTTC 2 cut(s) 263, 656
MseI TTAA 5 cut(s) 452, 753, 822, 1083, 1146
MspCI CTTAAG 1 cut(s) 752
MspR9I CCNGG 1 cut(s) 1256
MvaI CCWGG 1 cut(s) 1256
MwoI GCNNNNNNNGC 2 cut(s) 108, 1150
NdeII GATC 2 cut(s) 1023, 1213
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 3 cut(s) 96, 310, 537
NmuCI GTSAC 3 cut(s) 417, 697, 704
PciSI GCTCTTC 1 cut(s) 486
PdmI GAANNNNTTC 2 cut(s) 263, 656
PfeI GAWTC 4 cut(s) 343, 472, 524, 879
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 3 cut(s) 760, 968, 1058
PleI GAGTC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 1254
PspEI GGTNACC 1 cut(s) 417
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 1 cut(s) 1254
PspN4I GGNNCC 3 cut(s) 96, 310, 537
PspPI GGNCC 1 cut(s) 155
PstNI CAGNNNCTG 1 cut(s) 389
PsuI RGATCY 1 cut(s) 1213
RsaI GTAC 3 cut(s) 255, 310, 688
RsaNI GTAC 3 cut(s) 254, 309, 687
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 5 cut(s) 452, 753, 822, 1083, 1146
SatI GCNGC 3 cut(s) 759, 967, 1057
Sau3AI GATC 2 cut(s) 1023, 1213
Sau96I GGNCC 1 cut(s) 155
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 1256
SduI GDGCHC 2 cut(s) 1101, 1155
SfaNI GCATC 4 cut(s) 134, 343, 580, 886
SfcI CTRYAG 2 cut(s) 88, 438
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
Sse9I AATT 4 cut(s) 140, 221, 288, 575
SsiI CCGC 1 cut(s) 109
SspI AATATT 2 cut(s) 212, 611
SspMI CTAG 2 cut(s) 347, 1052
StyD4I CCNGG 1 cut(s) 1254
StyI CCWWGG 2 cut(s) 422, 927
TaaI ACNGT 5 cut(s) 236, 264, 375, 459, 1003
TaiI ACGT 3 cut(s) 45, 342, 893
TaqI TCGA 1 cut(s) 149
TasI AATT 4 cut(s) 140, 221, 288, 575
TatI WGTACW 2 cut(s) 253, 686
TfiI GAWTC 4 cut(s) 343, 472, 524, 879
Tru1I TTAA 5 cut(s) 452, 753, 822, 1083, 1146
Tru9I TTAA 5 cut(s) 452, 753, 822, 1083, 1146
TscAI CASTG 5 cut(s) 58, 239, 667, 1006, 1234
TseFI GTSAC 3 cut(s) 417, 697, 704
TseI GCWGC 3 cut(s) 758, 966, 1056
Tsp45I GTSAC 3 cut(s) 417, 697, 704
TspDTI ATGAA 3 cut(s) 38, 42, 352
TspGWI ACGGA 1 cut(s) 1047
TspRI CASTG 5 cut(s) 58, 239, 667, 1006, 1234
Van91I CCANNNNNTGG 1 cut(s) 280
Vha464I CTTAAG 1 cut(s) 752
VneI GTGCAC 1 cut(s) 1097
XapI RAATTY 2 cut(s) 221, 288
XmnI GAANNNNTTC 2 cut(s) 263, 656
XspI CTAG 2 cut(s) 347, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.