Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000462

Physical Location & Seq

Genomic Coordinates Forward (+)

44456170 .. 44456466

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG231500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCCGGTGCCTGCTGCTGCTGAGCAAACCCCTGTGGTTTTCGACTCCCAAGTCATTCAGTACCAATCCAACATCCCTTCCAAGTTCATATGGCCGGACCACGAGAAGCCGAGCCCCAACCCGCCGGACCTTCTCGCTCCGGCCATCGACCTCAGAAGTGATTCTGCCATCGTCGCGAACTCGATTCGTTCGGTGGACGAGGCCTGCAAGAAGCATGGATTCTTCCTCATTGTGAACCACGGAGTTGATCCGGTGCTTTTTTGCGAAAGCTCACGAGTACATAGACGTGTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010228 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045544 GO:0046394 GO:0048366 GO:0048367 GO:0048572 GO:0048573 GO:0048575 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

98

Amino Acids

10.86

Weight (kDa)

6.02

Isoelectric Point (pI)

72.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	47 - 89	6.6e-08	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca	FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica	MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica	Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis	pycom02g16160
rosa_chinensis	RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata	RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora	Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa	Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha	Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana	Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	7
AccII	CGCG	1 cut(s)	176
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	242
AcoI	YGGCCR	2 cut(s)	92, 141
AfaI	GTAC	2 cut(s)	62, 279
AflIII	ACRYGT	1 cut(s)	286
AjiI	CACGTC	1 cut(s)	287
AluBI	AGCT	1 cut(s)	270
AluI	AGCT	1 cut(s)	270
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	3 cut(s)	92, 141, 201
ApeKI	GCWGC	2 cut(s)	14, 17
ArsI	GACNNNNNNTTYG	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	160
AspS9I	GGNCC	2 cut(s)	97, 127
AvaII	GGWCC	2 cut(s)	97, 127
BanI	GGYRCC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	116
BauI	CACGAG	2 cut(s)	101, 273
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	2 cut(s)	152, 176
BisI	GCNGC	2 cut(s)	15, 18
BlpI	GCTNAGC	1 cut(s)	21
BlsI	GCNGC	2 cut(s)	16, 19
Bme18I	GGWCC	2 cut(s)	97, 127
BmgBI	CACGTC	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	97, 127
BmiI	GGNNCC	1 cut(s)	9
Bpu1102I	GCTNAGC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	250
Bse118I	RCCGGY	1 cut(s)	4
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	12, 166
BseXI	GCAGC	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	3 cut(s)	94, 143, 203
BshNI	GGYRCC	1 cut(s)	7
BsiSI	CCGG	5 cut(s)	5, 95, 125, 140, 251
BsnI	GGCC	3 cut(s)	94, 143, 203
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	247
Bsp1720I	GCTNAGC	1 cut(s)	21
Bsp68I	TCGCGA	1 cut(s)	176
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	3 cut(s)	94, 143, 203
BspCNI	CTCAG	2 cut(s)	13, 165
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	242
BspT107I	GGYRCC	1 cut(s)	7
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	247
BssSI	CACGAG	2 cut(s)	101, 273
Bst2BI	CACGAG	2 cut(s)	101, 273
BstC8I	GCNNGC	2 cut(s)	12, 205
BstDEI	CTNAG	2 cut(s)	21, 152
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	1 cut(s)	72
BstFNI	CGCG	1 cut(s)	176
BstKTI	GATC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	247
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	4
BsuRI	GGCC	3 cut(s)	94, 143, 203
BtgI	CCRYGG	1 cut(s)	238
BtrI	CACGTC	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	72
BtuMI	TCGCGA	1 cut(s)	176
Cac8I	GCNNGC	2 cut(s)	12, 205
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	97, 127
Csp6I	GTAC	2 cut(s)	61, 278
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	6 cut(s)	94, 109, 114, 143, 203, 270
CviKI_1	RGCY	6 cut(s)	94, 109, 114, 143, 203, 270
CviQI	GTAC	2 cut(s)	61, 278
DdeI	CTNAG	2 cut(s)	21, 152
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
DrdI	GACNNNNNNGTC	1 cut(s)	50
DseDI	GACNNNNNNGTC	1 cut(s)	50
EaeI	YGGCCR	2 cut(s)	92, 141
Eco147I	AGGCCT	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	97, 127
EcoT38I	GRGCYC	1 cut(s)	116
FaeI	CATG	1 cut(s)	218
FaiI	YATR	4 cut(s)	89, 91, 216, 282
FatI	CATG	1 cut(s)	214
FauI	CCCGC	1 cut(s)	129
FauNDI	CATATG	1 cut(s)	89
Fnu4HI	GCNGC	2 cut(s)	15, 18
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	15, 18
GluI	GCNGC	2 cut(s)	15, 18
HaeIII	GGCC	3 cut(s)	94, 143, 203
HapII	CCGG	5 cut(s)	5, 95, 125, 140, 251
Hin1II	CATG	1 cut(s)	218
HinfI	GANTC	4 cut(s)	44, 161, 184, 219
HpaII	CCGG	5 cut(s)	5, 95, 125, 140, 251
Hpy166II	GTNNAC	2 cut(s)	196, 235
Hpy188I	TCNGA	1 cut(s)	155
Hpy188III	TCNNGA	2 cut(s)	175, 273
Hpy8I	GTNNAC	2 cut(s)	196, 235
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	87, 140
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpyF3I	CTNAG	2 cut(s)	21, 152
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	1 cut(s)	218
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	8 cut(s)	18, 24, 45, 108, 138, 153, 217, 264
Lsp1109I	GCAGC	1 cut(s)	4
MaeII	ACGT	1 cut(s)	286
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MboII	GAAGA	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	3 cut(s)	161, 193, 236
MroXI	GAANNNNTTC	1 cut(s)	160
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	5 cut(s)	5, 95, 125, 140, 251
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	173
NdeI	CATATG	1 cut(s)	89
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	1 cut(s)	218
NlaIV	GGNNCC	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	135
NruI	TCGCGA	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	160
PfeI	GAWTC	3 cut(s)	161, 184, 219
PkrI	GCNGC	2 cut(s)	16, 19
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	2 cut(s)	97, 127
RruI	TCGCGA	1 cut(s)	176
RsaI	GTAC	2 cut(s)	62, 279
RsaNI	GTAC	2 cut(s)	61, 278
RseI	CAYNNNNRTG	1 cut(s)	285
SatI	GCNGC	2 cut(s)	15, 18
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	2 cut(s)	97, 127
SchI	GAGTC	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	4 cut(s)	132, 153, 272, 289
SinI	GGWCC	2 cut(s)	97, 127
SmiMI	CAYNNNNRTG	1 cut(s)	285
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	1 cut(s)	122
StuI	AGGCCT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	3 cut(s)	42, 147, 182
TatI	WGTACW	1 cut(s)	277
TfiI	GAWTC	3 cut(s)	161, 184, 219
TseI	GCWGC	2 cut(s)	14, 17
TspDTI	ATGAA	1 cut(s)	76
TspGWI	ACGGA	1 cut(s)	255
VpaK11BI	GGWCC	2 cut(s)	97, 127
XmnI	GAANNNNTTC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.