Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001144.1

Orthogroup ID

OG0000462

Physical Location & Seq

Genomic Coordinates Forward (+)

105200 .. 106947

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001144.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atgccaatgccccctaaccatccttcatcactaaaccaaacaaagcatgagaatgaacgaactcctttggttttcgatgctccagttcttcaatacgagtccaacataccaccccaattcatatggccagacgacgataagccatgccccgagagaccagagcttcatgttcctcccattgacctgaaaggctttctcagcagggatgcttcgatcgtctcagaagctattcgttcagtcgatgaggcatgcaagaaacatggattctttcttattgtcaatcatggagttgattcgcaactcatagcaaaagctcatgaatacatggacgcgttcttcagcatgaaactcacggagaagcaaagggctcagagaaaggttggtgacagctgcggatatgctagtagcttcactggcaggttctcctccaaacttccttggaaagaaacactttctttcagatactgcactgataaccagtgctcaacagttgtcaaggactatttcgtgaatgtgatgggtgaagatttcacagaattcgggaaggtttaccaagaatatggtgaagccatgaacaatctcagtaatgggataatggagctactaggactgagcctaggagttggccgagagtattttaaagaattcttcgaaggaaacgattcgataatgaggttgaactactatccaatatgccaaaaaccagatttaaccctaggaactggtcctcactgtgatcccacatccttaacgatcctgcatcaggaccaagtaggtggccttgaagtgtttgtagatgaaaagtggcacgccattactcctatccttgattccttcgttatcaacgttggtgacacatttatggctctatcaaatgggatttacaagagctgcttgcacagagcagttgtaaacaacaaaaccgtaaggaaatcacttgctttctttctttgcccaaacaaagacaaagtggtgaccccaccaacaagtttggtcgacactgaaacaccaaggttgtatcctgacttcacttggcctagtctgctagagtttacacagaagcactacagggccgacacaagaaccttggatgctttctccgactggatttcaaggaaaagcaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010228 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045544 GO:0046394 GO:0048366 GO:0048367 GO:0048572 GO:0048573 GO:0048575 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

375

Amino Acids

42.65

Weight (kDa)

5.69

Isoelectric Point (pI)

29.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca	FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica	MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica	Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis	pycom02g16160
rosa_chinensis	RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata	RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora	Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa	Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha	Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana	Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	408
AccI	GTMKAC	1 cut(s)	996
AccII	CGCG	1 cut(s)	332
AciI	CCGC	1 cut(s)	393
AclI	AACGTT	1 cut(s)	846
AclWI	GGATC	2 cut(s)	731, 748
AcoI	YGGCCR	2 cut(s)	125, 625
AcsI	RAATTY	2 cut(s)	536, 644
AcuI	CTGAAG	1 cut(s)	322
AfiI	CCNNNNNNNGG	1 cut(s)	763
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	4 cut(s)	92, 679, 785, 1113
AluBI	AGCT	7 cut(s)	163, 227, 314, 390, 408, 601, 891
AluI	AGCT	7 cut(s)	163, 227, 314, 390, 408, 601, 891
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	2 cut(s)	148, 223
AlwI	GGATC	2 cut(s)	731, 748
AlwNI	CAGNNNCTG	1 cut(s)	465
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	5 cut(s)	125, 625, 778, 1034, 1071
ApeKI	GCWGC	2 cut(s)	390, 891
ApoI	RAATTY	2 cut(s)	536, 644
Asp700I	GAANNNNTTC	2 cut(s)	228, 661
AspA2I	CCTAGG	2 cut(s)	616, 715
AspS9I	GGNCC	3 cut(s)	725, 766, 1071
AsuHPI	GGTGA	5 cut(s)	395, 533, 575, 863, 985
AsuII	TTCGAA	1 cut(s)	651
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	2 cut(s)	725, 766
AvrII	CCTAGG	2 cut(s)	616, 715
BalI	TGGCCA	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	370
BarI	GAAGNNNNNNTAC	2 cut(s)	1010, 1042
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	2 cut(s)	377, 878
BccI	CCATC	2 cut(s)	27, 511
BciVI	GTATCC	1 cut(s)	1029
BcoDI	GTCTC	2 cut(s)	148, 223
BfaI	CTAG	6 cut(s)	402, 605, 617, 716, 1038, 1046
BfmI	CTRYAG	1 cut(s)	1066
BfuAI	ACCTGC	1 cut(s)	408
BfuI	GTATCC	1 cut(s)	1029
BisI	GCNGC	2 cut(s)	391, 892
BlnI	CCTAGG	2 cut(s)	616, 715
BlsI	GCNGC	2 cut(s)	392, 893
Bme18I	GGWCC	2 cut(s)	725, 766
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	3 cut(s)	725, 766, 1071
BmsI	GCATC	4 cut(s)	67, 196, 769, 1081
BpmI	CTGGAG	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	651
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	5 cut(s)	437, 616, 715, 1010, 1086
Bsc4I	CCNNNNNNNGG	1 cut(s)	763
Bse1I	ACTGG	5 cut(s)	83, 418, 478, 727, 1109
BseDI	CCNNGG	5 cut(s)	437, 616, 715, 1010, 1086
BseGI	GGATG	4 cut(s)	19, 211, 743, 1096
BseLI	CCNNNNNNNGG	1 cut(s)	763
BseMII	CTCAG	5 cut(s)	211, 234, 383, 595, 602
BseNI	ACTGG	5 cut(s)	83, 418, 478, 727, 1109
BseRI	GAGGAG	1 cut(s)	415
BseXI	GCAGC	2 cut(s)	377, 878
BsgI	GTGCAG	1 cut(s)	451
Bsh1236I	CGCG	1 cut(s)	332
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	5 cut(s)	127, 627, 780, 1036, 1073
BsiEI	CGRYCG	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	485
BsiHKCI	CYCGRG	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	763
BsmAI	GTCTC	2 cut(s)	148, 223
BsmBI	CGTCTC	1 cut(s)	223
BsnI	GGCC	5 cut(s)	127, 627, 780, 1036, 1073
Bso31I	GGTCTC	1 cut(s)	148
BsoBI	CYCGRG	1 cut(s)	149
Bsp119I	TTCGAA	1 cut(s)	651
Bsp1286I	GDGCHC	2 cut(s)	370, 485
Bsp143I	GATC	3 cut(s)	213, 736, 753
BspACI	CCGC	1 cut(s)	393
BspANI	GGCC	5 cut(s)	127, 627, 780, 1036, 1073
BspCNI	CTCAG	5 cut(s)	210, 233, 382, 594, 603
BspFNI	CGCG	1 cut(s)	332
BspHI	TCATGA	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	408
BspPI	GGATC	2 cut(s)	731, 748
BspT104I	TTCGAA	1 cut(s)	651
BspTNI	GGTCTC	1 cut(s)	148
BsrI	ACTGG	5 cut(s)	83, 418, 478, 727, 1109
BssECI	CCNNGG	5 cut(s)	437, 616, 715, 1010, 1086
BssMI	GATC	3 cut(s)	213, 736, 753
BssT1I	CCWWGG	5 cut(s)	437, 616, 715, 1010, 1086
Bst4CI	ACNGT	3 cut(s)	490, 734, 925
BstBI	TTCGAA	1 cut(s)	651
BstC8I	GCNNGC	3 cut(s)	250, 810, 896
BstDEI	CTNAG	5 cut(s)	197, 220, 369, 581, 611
BstEII	GGTNACC	1 cut(s)	973
BstENI	CCTNNNNNAGG	1 cut(s)	761
BstF5I	GGATG	4 cut(s)	19, 211, 743, 1096
BstFNI	CGCG	1 cut(s)	332
BstKTI	GATC	3 cut(s)	216, 739, 756
BstMAI	GTCTC	2 cut(s)	148, 223
BstMBI	GATC	3 cut(s)	213, 736, 753
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	3 cut(s)	198, 414, 1042
BstNSI	RCATGY	1 cut(s)	252
BstPI	GGTNACC	1 cut(s)	973
BstSFI	CTRYAG	1 cut(s)	1066
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	377, 878
BstXI	CCANNNNNNTGG	2 cut(s)	560, 776
BsuI	GTATCC	1 cut(s)	1029
BsuRI	GGCC	5 cut(s)	127, 627, 780, 1036, 1073
BtsCI	GGATG	4 cut(s)	19, 211, 743, 1096
BtsIMutI	CAGTG	5 cut(s)	411, 468, 485, 730, 999
BveI	ACCTGC	1 cut(s)	408
Cac8I	GCNNGC	3 cut(s)	250, 810, 896
CaiI	CAGNNNCTG	1 cut(s)	465
CciI	TCATGA	1 cut(s)	316
Cfr13I	GGNCC	3 cut(s)	725, 766, 1071
CseI	GACGC	1 cut(s)	338
DdeI	CTNAG	5 cut(s)	197, 220, 369, 581, 611
DpnI	GATC	3 cut(s)	215, 738, 755
DpnII	GATC	3 cut(s)	213, 736, 753
DraI	TTTAAA	1 cut(s)	640
EaeI	YGGCCR	2 cut(s)	125, 625
Eco130I	CCWWGG	5 cut(s)	437, 616, 715, 1010, 1086
Eco24I	GRGCYC	1 cut(s)	370
Eco31I	GGTCTC	1 cut(s)	148
Eco47I	GGWCC	2 cut(s)	725, 766
Eco57I	CTGAAG	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	149
Eco91I	GGTNACC	1 cut(s)	973
EcoNI	CCTNNNNNAGG	1 cut(s)	761
EcoO65I	GGTNACC	1 cut(s)	973
EcoRI	GAATTC	2 cut(s)	536, 644
EcoT14I	CCWWGG	5 cut(s)	437, 616, 715, 1010, 1086
EcoT38I	GRGCYC	1 cut(s)	370
ErhI	CCWWGG	5 cut(s)	437, 616, 715, 1010, 1086
Esp3I	CGTCTC	1 cut(s)	223
FalI	AAGNNNNNCTT	4 cut(s)	435, 467, 878, 910
FauNDI	CATATG	1 cut(s)	122
FblI	GTMKAC	1 cut(s)	996
Fnu4HI	GCNGC	2 cut(s)	391, 892
FokI	GGATG	4 cut(s)	6, 218, 730, 1103
FriOI	GRGCYC	1 cut(s)	370
Fsp4HI	GCNGC	2 cut(s)	391, 892
FspBI	CTAG	6 cut(s)	402, 605, 617, 716, 1038, 1046
GluI	GCNGC	2 cut(s)	391, 892
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	5 cut(s)	127, 627, 780, 1036, 1073
HgaI	GACGC	1 cut(s)	338
HincII	GTYRAC	1 cut(s)	997
HindII	GTYRAC	1 cut(s)	997
HinfI	GANTC	5 cut(s)	98, 264, 293, 662, 830
HphI	GGTGA	5 cut(s)	395, 533, 575, 863, 985
Hpy166II	GTNNAC	4 cut(s)	550, 913, 997, 1053
Hpy188I	TCNGA	4 cut(s)	223, 372, 461, 1102
Hpy188III	TCNNGA	5 cut(s)	317, 508, 541, 764, 1022
Hpy8I	GTNNAC	4 cut(s)	550, 913, 997, 1053
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	4 cut(s)	33, 538, 647, 844
HpyCH4III	ACNGT	3 cut(s)	490, 734, 925
HpyCH4IV	ACGT	1 cut(s)	846
HpyCH4V	TGCA	4 cut(s)	252, 468, 760, 898
HpyF10VI	GCNNNNNNNGC	3 cut(s)	198, 414, 1042
HpyF3I	CTNAG	5 cut(s)	197, 220, 369, 581, 611
HpySE526I	ACGT	1 cut(s)	846
Kzo9I	GATC	3 cut(s)	213, 736, 753
LmnI	GCTCC	2 cut(s)	85, 598
Lsp1109I	GCAGC	2 cut(s)	377, 878
LweI	GCATC	4 cut(s)	67, 196, 769, 1081
MaeI	CTAG	6 cut(s)	402, 605, 617, 716, 1038, 1046
MaeII	ACGT	1 cut(s)	846
MaeIII	GTNAC	3 cut(s)	383, 851, 973
MalI	GATC	3 cut(s)	215, 738, 755
MboI	GATC	3 cut(s)	213, 736, 753
MboII	GAAGA	4 cut(s)	80, 328, 536, 640
MhlI	GDGCHC	2 cut(s)	370, 485
MlsI	TGGCCA	1 cut(s)	127
MluCI	AATT	3 cut(s)	116, 536, 644
MluI	ACGCGT	1 cut(s)	330
MluNI	TGGCCA	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	2 cut(s)	126, 1125
MnlI	CCTC	5 cut(s)	183, 238, 436, 666, 738
Mox20I	TGGCCA	1 cut(s)	127
MroXI	GAANNNNTTC	2 cut(s)	228, 661
MscI	TGGCCA	1 cut(s)	127
MseI	TTAA	3 cut(s)	639, 710, 749
MslI	CAYNNNNRTG	2 cut(s)	51, 860
Msp20I	TGGCCA	1 cut(s)	127
MspA1I	CMGCKG	1 cut(s)	390
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	3 cut(s)	198, 414, 1042
NdeI	CATATG	1 cut(s)	122
NdeII	GATC	3 cut(s)	213, 736, 753
NmeAIII	GCCGAG	1 cut(s)	653
NmuCI	GTSAC	3 cut(s)	383, 851, 973
NspI	RCATGY	1 cut(s)	252
NspV	TTCGAA	1 cut(s)	651
PaeI	GCATGC	1 cut(s)	252
PagI	TCATGA	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	2 cut(s)	657, 843
PdmI	GAANNNNTTC	2 cut(s)	228, 661
PfeI	GAWTC	4 cut(s)	264, 293, 662, 830
PkrI	GCNGC	2 cut(s)	392, 893
Ple19I	CGATCG	1 cut(s)	216
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Psp1406I	AACGTT	1 cut(s)	846
PspEI	GGTNACC	1 cut(s)	973
PspPI	GGNCC	3 cut(s)	725, 766, 1071
PstNI	CAGNNNCTG	1 cut(s)	465
PvuI	CGATCG	1 cut(s)	216
PvuII	CAGCTG	1 cut(s)	390
RseI	CAYNNNNRTG	2 cut(s)	51, 860
SalI	GTCGAC	1 cut(s)	995
SaqAI	TTAA	3 cut(s)	639, 710, 749
SatI	GCNGC	2 cut(s)	391, 892
Sau3AI	GATC	3 cut(s)	213, 736, 753
Sau96I	GGNCC	3 cut(s)	725, 766, 1071
SchI	GAGTC	1 cut(s)	107
SduI	GDGCHC	2 cut(s)	370, 485
SfaNI	GCATC	4 cut(s)	67, 196, 769, 1081
SfcI	CTRYAG	1 cut(s)	1066
SfuI	TTCGAA	1 cut(s)	651
SinI	GGWCC	2 cut(s)	725, 766
SmiMI	CAYNNNNRTG	2 cut(s)	51, 860
SphI	GCATGC	1 cut(s)	252
Sse9I	AATT	3 cut(s)	116, 536, 644
SsiI	CCGC	1 cut(s)	393
SspMI	CTAG	6 cut(s)	402, 605, 617, 716, 1038, 1046
StyI	CCWWGG	5 cut(s)	437, 616, 715, 1010, 1086
TaaI	ACNGT	3 cut(s)	490, 734, 925
TaiI	ACGT	1 cut(s)	849
TaqI	TCGA	6 cut(s)	75, 212, 240, 651, 665, 996
TasI	AATT	3 cut(s)	116, 536, 644
TfiI	GAWTC	4 cut(s)	264, 293, 662, 830
Tru1I	TTAA	3 cut(s)	639, 710, 749
Tru9I	TTAA	3 cut(s)	639, 710, 749
TscAI	CASTG	5 cut(s)	418, 475, 485, 737, 1006
TseFI	GTSAC	3 cut(s)	383, 851, 973
TseI	GCWGC	2 cut(s)	390, 891
Tsp45I	GTSAC	3 cut(s)	383, 851, 973
TspDTI	ATGAA	8 cut(s)	15, 69, 109, 155, 333, 359, 587, 813
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	5 cut(s)	418, 475, 485, 737, 1006
VpaK11BI	GGWCC	2 cut(s)	725, 766
XagI	CCTNNNNNAGG	1 cut(s)	761
XapI	RAATTY	2 cut(s)	536, 644
XceI	RCATGY	1 cut(s)	252
XmaJI	CCTAGG	2 cut(s)	616, 715
XmiI	GTMKAC	1 cut(s)	996
XmnI	GAANNNNTTC	2 cut(s)	228, 661
XspI	CTAG	6 cut(s)	402, 605, 617, 716, 1038, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.