pycom02g16160

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
13268246 .. 13269735
1490 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g16160.3

Sequence Viewer

Length: 1167 bp
ATGCCAATGCCTCCTCAACATCTCCCACCAATGAATGAAACCAACAAAGAAAATGAAGAAAACTCTTTGGTGTTTGATGCTTCAGTTGCTCAGTACCAATCCAGCATACCCTCCAAGTTCATATGGCCCGACCACGAGAAGCCCTGCTCCGAGTCGCCAGAGCTTCCAGCTCCTCTCGTTGACCTGAAAGGCTTTCTCTCAGGGGATACGTGGGAGGTCTTAAATGCAACTCGTTTGGTCGATGAGGCATGCAAGAAGCATGGTTTTTTTCTCATTGTTAACCATGGAGTTGATTTGCAACTCGTAGGAAAAGCTCATGAGTACATGGACTCCTTCTTTGGTATGCAACTCTCGCAGAAGCAAAGGGCTCAGAGAAAGGCTGGTGAGCACTGTGGATATGCCAGTAGCTTCGTTGGCAGGTTCTCCTCCAAACTTCCATGGAAAGAAACAATTTCTTTCAGATATAGTGCCGATAACCAGTCCTCGGTCAATGACTATTTTGTGAACGTGATGGGTGAAGATTTCAGAGATTTCGGGAAGGTTTACCAAGAATATTGTGATGCCATGAACAACCTCTCCAGTGCGATAATGGAGCTACTCGGAATGAGCCTAGGCGTTGGACGAAACTATTTCAAAGAGTTCTTCGAAGGAAATGATTCGATCATGAGGTTGAACTACTACCCAATGTGCCAAAAACCAGACCTAACACTAGGAACCGGGCCTCACTGTGATCCCACATCCTTAACAATCCTTCATCAGGATCAAGTCGGCGGACTTCAAGTGTTCGTAGATGATAAATGGCACTCCGTTACTCCTAAGCTTGACGCTTTCGTCGTCAACATTGGCGATACATTTATGGTAAGCTACCTTATTCATCAATTAGGCTCACTTTATTTAAACAGAGCTCTATCAAATGGGATTTACAGGAGCTGCTTGCACAGAGCAGTGGTGAACAACAAAACTGTGAGGAAATCTCTAACCTTCTTCCTCTGTCCCAAAAAGGACAGAGTGGTGACCCCACCGAGAGGCTTGGTCGATTCCAATAGCCCCAGGAAGTACCCTGACTTCACCTGGCCTACTTTCCTAGAATTTACGCAGAAACACTACCGCGCCGATATGAGGACCCTGGACGCCTTCTCCGACTGGATTAGAACTACAACAAACTAA

Protein Analysis

389

Amino Acids

44.28

Weight (kDa)

6.31

Isoelectric Point (pI)

30.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis pycom02g16160
rosa_chinensis RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 830
Acc36I ACCTGC 1 cut(s) 408
AccII CGCG 1 cut(s) 1110
AciI CCGC 2 cut(s) 771, 1108
AclWI GGATC 2 cut(s) 725, 768
AcsI RAATTY 1 cut(s) 1088
AcuI CTGAAG 1 cut(s) 66
AcyI GRCGYC 1 cut(s) 1131
AfaI GTAC 3 cut(s) 95, 323, 1058
AfiI CCNNNNNNNGG 4 cut(s) 484, 757, 1025, 1119
AgsI TTSAA 3 cut(s) 634, 673, 779
AjnI CCWGG 3 cut(s) 1049, 1070, 1125
AloI GAACNNNNNNTCC 2 cut(s) 560, 592
AluBI AGCT 9 cut(s) 163, 170, 314, 408, 595, 820, 864, 905, 930
AluI AGCT 9 cut(s) 163, 170, 314, 408, 595, 820, 864, 905, 930
Alw21I GWGCWC 2 cut(s) 390, 907
AlwI GGATC 2 cut(s) 725, 768
AlwNI CAGNNNCTG 1 cut(s) 930
AoxI GGCC 3 cut(s) 125, 719, 1073
ApeKI GCWGC 1 cut(s) 930
ApoI RAATTY 1 cut(s) 1088
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
Asp700I GAANNNNTTC 1 cut(s) 655
AspA2I CCTAGG 1 cut(s) 610
AspLEI GCGC 1 cut(s) 1112
AspS9I GGNCC 3 cut(s) 126, 719, 1122
AsuC2I CCSGG 1 cut(s) 718
AsuHPI GGTGA 5 cut(s) 395, 527, 961, 1024, 1060
AsuII TTCGAA 1 cut(s) 645
AvaII GGWCC 1 cut(s) 1122
AvrII CCTAGG 1 cut(s) 610
BanII GRGCYC 2 cut(s) 370, 907
BarI GAAGNNNNNNTAC 2 cut(s) 1049, 1081
BauI CACGAG 1 cut(s) 134
Bbv12I GWGCWC 2 cut(s) 390, 907
BbvI GCAGC 1 cut(s) 917
BccI CCATC 1 cut(s) 505
BciT130I CCWGG 3 cut(s) 1051, 1072, 1127
BciVI GTATCC 1 cut(s) 199
BcnI CCSGG 1 cut(s) 718
BfaI CTAG 3 cut(s) 611, 710, 1085
BfuAI ACCTGC 1 cut(s) 408
BfuI GTATCC 1 cut(s) 199
BisI GCNGC 1 cut(s) 931
BlnI CCTAGG 1 cut(s) 610
BlsI GCNGC 1 cut(s) 932
Bme1390I CCNGG 4 cut(s) 718, 1051, 1072, 1127
Bme18I GGWCC 1 cut(s) 1122
BmgT120I GGNCC 3 cut(s) 126, 719, 1122
BmiI GGNNCC 2 cut(s) 715, 1124
BmrFI CCNGG 4 cut(s) 718, 1051, 1072, 1127
BmsI GCATC 2 cut(s) 67, 550
BplI GAGNNNNNCTC 2 cut(s) 958, 990
BpmI CTGGAG 1 cut(s) 562
Bpu10I CCTNAGC 1 cut(s) 816
Bpu14I TTCGAA 1 cut(s) 645
BpuMI CCSGG 1 cut(s) 718
BsaAI YACGTR 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 1131
BsaJI CCNNGG 6 cut(s) 283, 437, 483, 610, 1049, 1125
BsaXI ACNNNNNCTCC 6 cut(s) 314, 344, 560, 590, 1121, 1151
Bsc4I CCNNNNNNNGG 4 cut(s) 484, 757, 1025, 1119
Bse1I ACTGG 4 cut(s) 402, 478, 579, 1148
BseBI CCWGG 3 cut(s) 1051, 1072, 1127
BseDI CCNNGG 6 cut(s) 283, 437, 483, 610, 1049, 1125
BseGI GGATG 1 cut(s) 737
BseLI CCNNNNNNNGG 4 cut(s) 484, 757, 1025, 1119
BseMII CTCAG 3 cut(s) 104, 213, 383
BseNI ACTGG 4 cut(s) 402, 478, 579, 1148
BseRI GAGGAG 2 cut(s) 162, 415
BseXI GCAGC 1 cut(s) 917
Bsh1236I CGCG 1 cut(s) 1110
BshFI GGCC 3 cut(s) 127, 721, 1075
BsiHKAI GWGCWC 2 cut(s) 390, 907
BsiSI CCGG 1 cut(s) 717
BslFI GGGAC 1 cut(s) 978
BslI CCNNNNNNNGG 4 cut(s) 484, 757, 1025, 1119
BsmFI GGGAC 1 cut(s) 978
BsnI GGCC 3 cut(s) 127, 721, 1075
Bsp119I TTCGAA 1 cut(s) 645
Bsp1286I GDGCHC 3 cut(s) 370, 390, 907
Bsp143I GATC 3 cut(s) 660, 730, 760
Bsp19I CCATGG 2 cut(s) 283, 437
BspACI CCGC 2 cut(s) 771, 1108
BspANI GGCC 3 cut(s) 127, 721, 1075
BspCNI CTCAG 3 cut(s) 103, 212, 382
BspFNI CGCG 1 cut(s) 1110
BspHI TCATGA 2 cut(s) 316, 663
BspLI GGNNCC 2 cut(s) 715, 1124
BspMI ACCTGC 1 cut(s) 408
BspPI GGATC 2 cut(s) 725, 768
BspT104I TTCGAA 1 cut(s) 645
BsrI ACTGG 4 cut(s) 402, 478, 579, 1148
BssECI CCNNGG 6 cut(s) 283, 437, 483, 610, 1049, 1125
BssMI GATC 3 cut(s) 660, 730, 760
BssNI GRCGYC 1 cut(s) 1131
BssSI CACGAG 1 cut(s) 134
BssT1I CCWWGG 3 cut(s) 283, 437, 610
Bst2BI CACGAG 1 cut(s) 134
Bst2UI CCWGG 3 cut(s) 1051, 1072, 1127
Bst4CI ACNGT 3 cut(s) 392, 728, 964
BstACI GRCGYC 1 cut(s) 1131
BstBAI YACGTR 1 cut(s) 210
BstBI TTCGAA 1 cut(s) 645
BstC8I GCNNGC 2 cut(s) 250, 935
BstDEI CTNAG 4 cut(s) 90, 199, 369, 816
BstDSI CCRYGG 2 cut(s) 283, 437
BstEII GGTNACC 1 cut(s) 1012
BstENI CCTNNNNNAGG 1 cut(s) 755
BstF5I GGATG 1 cut(s) 737
BstFNI CGCG 1 cut(s) 1110
BstHHI GCGC 1 cut(s) 1112
BstKTI GATC 3 cut(s) 663, 733, 763
BstMBI GATC 3 cut(s) 660, 730, 760
BstMWI GCNNNNNNNGC 3 cut(s) 86, 352, 414
BstNI CCWGG 3 cut(s) 1051, 1072, 1127
BstNSI RCATGY 1 cut(s) 252
BstPI GGTNACC 1 cut(s) 1012
BstSCI CCNGG 4 cut(s) 716, 1049, 1070, 1125
BstUI CGCG 1 cut(s) 1110
BstV1I GCAGC 1 cut(s) 917
BsuI GTATCC 1 cut(s) 199
BsuRI GGCC 3 cut(s) 127, 721, 1075
BtgI CCRYGG 2 cut(s) 283, 437
BtsCI GGATG 1 cut(s) 737
BtsI GCAGTG 1 cut(s) 951
BtsIMutI CAGTG 4 cut(s) 388, 586, 724, 951
BveI ACCTGC 1 cut(s) 408
Cac8I GCNNGC 2 cut(s) 250, 935
CaiI CAGNNNCTG 1 cut(s) 930
CciI TCATGA 2 cut(s) 316, 663
CfoI GCGC 1 cut(s) 1112
Cfr13I GGNCC 3 cut(s) 126, 719, 1122
CseI GACGC 2 cut(s) 833, 1139
Csp6I GTAC 3 cut(s) 94, 322, 1057
CviAII CATG 8 cut(s) 249, 260, 284, 317, 325, 438, 565, 664
CviQI GTAC 3 cut(s) 94, 322, 1057
DdeI CTNAG 4 cut(s) 90, 199, 369, 816
DpnI GATC 3 cut(s) 662, 732, 762
DpnII GATC 3 cut(s) 660, 730, 760
DraI TTTAAA 1 cut(s) 897
DrdI GACNNNNNNGTC 1 cut(s) 830
DseDI GACNNNNNNGTC 1 cut(s) 830
EciI GGCGGA 1 cut(s) 786
Ecl136II GAGCTC 1 cut(s) 905
Eco130I CCWWGG 3 cut(s) 283, 437, 610
Eco24I GRGCYC 2 cut(s) 370, 907
Eco47I GGWCC 1 cut(s) 1122
Eco53kI GAGCTC 1 cut(s) 905
Eco57I CTGAAG 1 cut(s) 66
Eco91I GGTNACC 1 cut(s) 1012
EcoICRI GAGCTC 1 cut(s) 905
EcoNI CCTNNNNNAGG 1 cut(s) 755
EcoO109I RGGNCCY 1 cut(s) 1122
EcoO65I GGTNACC 1 cut(s) 1012
EcoRII CCWGG 3 cut(s) 1049, 1070, 1125
EcoT14I CCWWGG 3 cut(s) 283, 437, 610
EcoT38I GRGCYC 2 cut(s) 370, 907
ErhI CCWWGG 3 cut(s) 283, 437, 610
FaeI CATG 8 cut(s) 252, 263, 287, 320, 328, 441, 568, 667
FaqI GGGAC 1 cut(s) 978
FatI CATG 8 cut(s) 248, 259, 283, 316, 324, 437, 564, 663
FauNDI CATATG 1 cut(s) 122
Fnu4HI GCNGC 1 cut(s) 931
FokI GGATG 1 cut(s) 724
FriOI GRGCYC 2 cut(s) 370, 907
Fsp4HI GCNGC 1 cut(s) 931
FspBI CTAG 3 cut(s) 611, 710, 1085
GlaI GCGC 1 cut(s) 1111
GluI GCNGC 1 cut(s) 931
GsuI CTGGAG 1 cut(s) 562
HaeIII GGCC 3 cut(s) 127, 721, 1075
HapII CCGG 1 cut(s) 717
HgaI GACGC 2 cut(s) 833, 1139
HhaI GCGC 1 cut(s) 1112
Hin1I GRCGYC 1 cut(s) 1131
Hin1II CATG 8 cut(s) 252, 263, 287, 320, 328, 441, 568, 667
Hin6I GCGC 1 cut(s) 1110
HinP1I GCGC 1 cut(s) 1110
HincII GTYRAC 3 cut(s) 181, 280, 838
HindII GTYRAC 3 cut(s) 181, 280, 838
HindIII AAGCTT 1 cut(s) 818
HinfI GANTC 4 cut(s) 152, 329, 656, 1037
HpaI GTTAAC 1 cut(s) 280
HpaII CCGG 1 cut(s) 717
HphI GGTGA 5 cut(s) 395, 527, 961, 1024, 1060
Hpy166II GTNNAC 6 cut(s) 181, 280, 505, 544, 838, 952
Hpy188I TCNGA 6 cut(s) 151, 372, 461, 527, 602, 1141
Hpy188III TCNNGA 4 cut(s) 317, 535, 664, 758
Hpy8I GTNNAC 6 cut(s) 181, 280, 505, 544, 838, 952
Hpy99I CGWCG 1 cut(s) 836
HpyAV CCTTC 6 cut(s) 343, 532, 641, 761, 991, 1144
HpyCH4III ACNGT 3 cut(s) 392, 728, 964
HpyCH4IV ACGT 2 cut(s) 209, 507
HpyCH4V TGCA 5 cut(s) 227, 252, 298, 346, 937
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 352, 414
HpyF3I CTNAG 4 cut(s) 90, 199, 369, 816
HpySE526I ACGT 2 cut(s) 209, 507
Hsp92I GRCGYC 1 cut(s) 1131
Hsp92II CATG 8 cut(s) 252, 263, 287, 320, 328, 441, 568, 667
HspAI GCGC 1 cut(s) 1110
KspAI GTTAAC 1 cut(s) 280
Kzo9I GATC 3 cut(s) 660, 730, 760
LmnI GCTCC 4 cut(s) 152, 175, 592, 927
Lsp1109I GCAGC 1 cut(s) 917
LweI GCATC 2 cut(s) 67, 550
MaeI CTAG 3 cut(s) 611, 710, 1085
MaeII ACGT 2 cut(s) 209, 507
MaeIII GTNAC 2 cut(s) 808, 1012
MalI GATC 3 cut(s) 662, 732, 762
MboI GATC 3 cut(s) 660, 730, 760
MboII GAAGA 4 cut(s) 68, 530, 634, 976
MhlI GDGCHC 3 cut(s) 370, 390, 907
MluCI AATT 3 cut(s) 450, 878, 1088
MlyI GAGTC 2 cut(s) 161, 323
MmeI TCCRAC 2 cut(s) 598, 1164
MroXI GAANNNNTTC 1 cut(s) 655
MseI TTAA 4 cut(s) 221, 279, 743, 896
MspI CCGG 1 cut(s) 717
MspR9I CCNGG 4 cut(s) 718, 1051, 1072, 1127
MvaI CCWGG 3 cut(s) 1051, 1072, 1127
MvnI CGCG 1 cut(s) 1110
MwoI GCNNNNNNNGC 3 cut(s) 86, 352, 414
NciI CCSGG 1 cut(s) 718
NcoI CCATGG 2 cut(s) 283, 437
NdeI CATATG 1 cut(s) 122
NdeII GATC 3 cut(s) 660, 730, 760
NlaIII CATG 8 cut(s) 252, 263, 287, 320, 328, 441, 568, 667
NlaIV GGNNCC 2 cut(s) 715, 1124
NmuCI GTSAC 1 cut(s) 1012
NspI RCATGY 1 cut(s) 252
NspV TTCGAA 1 cut(s) 645
PaeI GCATGC 1 cut(s) 252
PagI TCATGA 2 cut(s) 316, 663
PcsI WCGNNNNNNNCGW 2 cut(s) 831, 1137
PdmI GAANNNNTTC 1 cut(s) 655
PfeI GAWTC 2 cut(s) 656, 1037
PkrI GCNGC 1 cut(s) 932
PleI GAGTC 2 cut(s) 160, 323
PpsI GAGTC 2 cut(s) 160, 323
Ppu21I YACGTR 1 cut(s) 210
PpuMI RGGWCCY 1 cut(s) 1122
Psp124BI GAGCTC 1 cut(s) 907
Psp5II RGGWCCY 1 cut(s) 1122
Psp6I CCWGG 3 cut(s) 1049, 1070, 1125
PspEI GGTNACC 1 cut(s) 1012
PspGI CCWGG 3 cut(s) 1049, 1070, 1125
PspN4I GGNNCC 2 cut(s) 715, 1124
PspPI GGNCC 3 cut(s) 126, 719, 1122
PspPPI RGGWCCY 1 cut(s) 1122
PstNI CAGNNNCTG 1 cut(s) 930
RsaI GTAC 3 cut(s) 95, 323, 1058
RsaNI GTAC 3 cut(s) 94, 322, 1057
SacI GAGCTC 1 cut(s) 907
SaqAI TTAA 4 cut(s) 221, 279, 743, 896
SatI GCNGC 1 cut(s) 931
Sau3AI GATC 3 cut(s) 660, 730, 760
Sau96I GGNCC 3 cut(s) 126, 719, 1122
SchI GAGTC 2 cut(s) 161, 323
ScrFI CCNGG 4 cut(s) 718, 1051, 1072, 1127
SduI GDGCHC 3 cut(s) 370, 390, 907
SfaNI GCATC 2 cut(s) 67, 550
SfuI TTCGAA 1 cut(s) 645
SinI GGWCC 1 cut(s) 1122
SphI GCATGC 1 cut(s) 252
Sse9I AATT 3 cut(s) 450, 878, 1088
SsiI CCGC 2 cut(s) 771, 1108
SspI AATATT 1 cut(s) 554
SspMI CTAG 3 cut(s) 611, 710, 1085
SstI GAGCTC 1 cut(s) 907
StyD4I CCNGG 4 cut(s) 716, 1049, 1070, 1125
StyI CCWWGG 3 cut(s) 283, 437, 610
TaaI ACNGT 3 cut(s) 392, 728, 964
TaiI ACGT 2 cut(s) 212, 510
TaqI TCGA 4 cut(s) 240, 645, 659, 1035
TaqII GACCGA 1 cut(s) 475
TasI AATT 3 cut(s) 450, 878, 1088
TatI WGTACW 1 cut(s) 321
TfiI GAWTC 2 cut(s) 656, 1037
Tru1I TTAA 4 cut(s) 221, 279, 743, 896
Tru9I TTAA 4 cut(s) 221, 279, 743, 896
TscAI CASTG 4 cut(s) 395, 586, 731, 951
TseFI GTSAC 1 cut(s) 1012
TseI GCWGC 1 cut(s) 930
Tsp45I GTSAC 1 cut(s) 1012
TspDTI ATGAA 7 cut(s) 47, 51, 69, 109, 581, 743, 863
TspGWI ACGGA 1 cut(s) 796
TspRI CASTG 4 cut(s) 395, 586, 731, 951
VpaK11BI GGWCC 1 cut(s) 1122
XagI CCTNNNNNAGG 1 cut(s) 755
XapI RAATTY 1 cut(s) 1088
XceI RCATGY 1 cut(s) 252
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XmaJI CCTAGG 1 cut(s) 610
XmnI GAANNNNTTC 1 cut(s) 655
XspI CTAG 3 cut(s) 611, 710, 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.