Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000462

Physical Location & Seq

Genomic Coordinates Reverse (-)

31295373 .. 31296189

Gene Structure 817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0218900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTAGAAAGAAAGTGAGAATGGCCTACATCACCAACAATTCAGCAAGGAAAACTACATTCAAGAAAAGGAAAAAGGGTATGATGAAGAAGTTGAGCGAATTGAGCACTCTCTGTGGAGTTGATGCATGTGCTGTTATTTACAGCCCATTTGATTCTCAACCTGAGGTTTGGCCTTCTCCATCTAGAGTCAAAAATGTTCTTGAGAAATTCAAGAACATGCCTATGATAGAGAAAAGCCAAAAGATGTTGAACCAAGAAAGCTTTCTGAGGGGGATGATATCTAAAACGAATGAGCAATTGAAGAAAGTAAGAAAGCAAAATCATGAGAAGGAATTGAGACGTACCATGTTCCAAAGTCTCACTACAGGAATTCCCCAATTCCAGAATCTGAATCTGATGGATATGGGTGATCTTGAGCAGCTTATCAACCAGAAATTGGATGAGATTGATAGCAGAATAGAGAATCTCGGTGAGGAGGTGATCGAAAATGAAACCAAAATGTCCAAGTTGCACAATAATGCATGCGAAGGAATCCATGGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010228 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045544 GO:0046394 GO:0048366 GO:0048367 GO:0048572 GO:0048573 GO:0048575 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

182

Amino Acids

21.1

Weight (kDa)

9.58

Isoelectric Point (pI)

59.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 50	1.6e-18	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca	FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica	MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica	Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis	pycom02g16160
rosa_chinensis	RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata	RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora	Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa	Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha	Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana	Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	439
AcsI	RAATTY	2 cut(s)	209, 372
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgsI	TTSAA	4 cut(s)	64, 214, 253, 304
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	2 cut(s)	264, 424
AluI	AGCT	2 cut(s)	264, 424
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	2 cut(s)	334, 365
AlwNI	CAGNNNCTG	1 cut(s)	391
AoxI	GGCC	2 cut(s)	24, 173
ApeKI	GCWGC	1 cut(s)	421
ApoI	RAATTY	2 cut(s)	209, 372
Asp700I	GAANNNNTTC	1 cut(s)	264
AsuHPI	GGTGA	4 cut(s)	25, 422, 485, 493
AxyI	CCTNAGG	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	2 cut(s)	190, 394
BcoDI	GTCTC	2 cut(s)	334, 365
BfaI	CTAG	2 cut(s)	6, 186
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
BmsI	GCATC	1 cut(s)	115
BpuEI	CTTGAG	2 cut(s)	224, 437
BsaJI	CCNNGG	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse21I	CCTNAGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	538
BseGI	GGATG	2 cut(s)	282, 448
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMII	CTCAG	2 cut(s)	156, 260
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	433
BshFI	GGCC	2 cut(s)	26, 175
BsiHKAI	GWGCWC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	2 cut(s)	334, 365
BsmBI	CGTCTC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	26, 175
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	412, 483
Bsp19I	CCATGG	1 cut(s)	538
BspANI	GGCC	2 cut(s)	26, 175
BspCNI	CTCAG	2 cut(s)	157, 261
BspHI	TCATGA	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	538
BssMI	GATC	2 cut(s)	412, 483
BssT1I	CCWWGG	1 cut(s)	538
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	2 cut(s)	165, 269
BstDSI	CCRYGG	1 cut(s)	538
BstF5I	GGATG	2 cut(s)	282, 448
BstKTI	GATC	2 cut(s)	415, 486
BstMAI	GTCTC	2 cut(s)	334, 365
BstMBI	GATC	2 cut(s)	412, 483
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNSI	RCATGY	4 cut(s)	132, 223, 528, 547
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	1 cut(s)	433
Bsu36I	CCTNAGG	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	26, 175
BtgI	CCRYGG	1 cut(s)	538
BtsCI	GGATG	2 cut(s)	282, 448
Cac8I	GCNNGC	1 cut(s)	526
CaiI	CAGNNNCTG	1 cut(s)	391
CciI	TCATGA	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	7 cut(s)	129, 220, 326, 349, 525, 539, 544
CviJI	RGCY	7 cut(s)	5, 26, 147, 175, 240, 264, 424
CviKI_1	RGCY	7 cut(s)	5, 26, 147, 175, 240, 264, 424
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	2 cut(s)	165, 269
DpnI	GATC	2 cut(s)	414, 485
DpnII	GATC	2 cut(s)	412, 483
Eco130I	CCWWGG	1 cut(s)	538
Eco32I	GATATC	1 cut(s)	282
Eco81I	CCTNAGG	1 cut(s)	165
EcoRI	GAATTC	1 cut(s)	372
EcoRV	GATATC	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	538
EcoT22I	ATGCAT	2 cut(s)	130, 526
ErhI	CCWWGG	1 cut(s)	538
Esp3I	CGTCTC	1 cut(s)	334
FaeI	CATG	7 cut(s)	132, 223, 329, 352, 528, 542, 547
FatI	CATG	7 cut(s)	128, 219, 325, 348, 524, 538, 543
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	2 cut(s)	289, 455
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	2 cut(s)	6, 186
GluI	GCNGC	1 cut(s)	422
HaeIII	GGCC	2 cut(s)	26, 175
Hin1II	CATG	7 cut(s)	132, 223, 329, 352, 528, 542, 547
HindIII	AAGCTT	1 cut(s)	262
HinfI	GANTC	6 cut(s)	155, 189, 388, 394, 466, 534
HphI	GGTGA	4 cut(s)	25, 422, 485, 493
Hpy188I	TCNGA	3 cut(s)	270, 393, 399
Hpy188III	TCNNGA	7 cut(s)	64, 186, 203, 214, 326, 385, 416
HpyAV	CCTTC	3 cut(s)	186, 325, 524
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	3 cut(s)	128, 514, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	165, 269
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	7 cut(s)	132, 223, 329, 352, 528, 542, 547
Kzo9I	GATC	2 cut(s)	412, 483
LpnPI	CCDG	4 cut(s)	177, 354, 398, 446
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	2 cut(s)	6, 186
MaeII	ACGT	1 cut(s)	343
MalI	GATC	2 cut(s)	414, 485
MboI	GATC	2 cut(s)	412, 483
MboII	GAAGA	2 cut(s)	100, 316
MfeI	CAATTG	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	8 cut(s)	40, 101, 209, 299, 335, 372, 380, 437
MlyI	GAGTC	1 cut(s)	198
MnlI	CCTC	4 cut(s)	160, 264, 469, 472
Mph1103I	ATGCAT	2 cut(s)	130, 526
MroXI	GAANNNNTTC	1 cut(s)	264
MslI	CAYNNNNRTG	2 cut(s)	224, 519
MunI	CAATTG	1 cut(s)	299
MwoI	GCNNNNNNNGC	1 cut(s)	105
NcoI	CCATGG	1 cut(s)	538
NdeII	GATC	2 cut(s)	412, 483
NlaIII	CATG	7 cut(s)	132, 223, 329, 352, 528, 542, 547
NsiI	ATGCAT	2 cut(s)	130, 526
NspI	RCATGY	4 cut(s)	132, 223, 528, 547
PaeI	GCATGC	1 cut(s)	528
PagI	TCATGA	1 cut(s)	325
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	5 cut(s)	155, 388, 394, 466, 534
PflMI	CCANNNNNTGG	1 cut(s)	439
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PstNI	CAGNNNCTG	1 cut(s)	391
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
RseI	CAYNNNNRTG	2 cut(s)	224, 519
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	2 cut(s)	412, 483
SchI	GAGTC	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	6 cut(s)	166, 171, 266, 346, 426, 483
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	1 cut(s)	366
SmiMI	CAYNNNNRTG	2 cut(s)	224, 519
SmlI	CTYRAG	2 cut(s)	203, 416
SmoI	CTYRAG	2 cut(s)	203, 416
SphI	GCATGC	1 cut(s)	528
Sse9I	AATT	8 cut(s)	40, 101, 209, 299, 335, 372, 380, 437
SspMI	CTAG	2 cut(s)	6, 186
StyI	CCWWGG	1 cut(s)	538
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	1 cut(s)	486
TasI	AATT	8 cut(s)	40, 101, 209, 299, 335, 372, 380, 437
TfiI	GAWTC	5 cut(s)	155, 388, 394, 466, 534
TseI	GCWGC	1 cut(s)	421
TspDTI	ATGAA	2 cut(s)	101, 507
Van91I	CCANNNNNTGG	1 cut(s)	439
XapI	RAATTY	2 cut(s)	209, 372
XbaI	TCTAGA	1 cut(s)	185
XceI	RCATGY	4 cut(s)	132, 223, 528, 547
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	2 cut(s)	6, 186
Zsp2I	ATGCAT	2 cut(s)	130, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.