RLG00000028397

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
22239881 .. 22242038
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028397

Sequence Viewer

Length: 918 bp
ATGTTGGCCATGCTGGTGACTGCTCCTGCTGAGCAAAACCCAGTGGTTTTCGACTCCCAAGTCATTCAGTACCAATCCAACATCCCTTCCCAGTTCATATGGCCGGACCACGAGAAGCCGAGCCCCAACCGGCCGGACCTTCTCGCTCCGGCCATCGACCTCAACGGCTTCCTCAGCGGCGATCCTACCATCGTCGCGAACTCGATTCGTTCGGTCTACGAGACCTGCAAGAAGCATGGATTCTTCCTCATCGTGAACCACGGAGTTGATCGGGGGCTCATTGCGAAAGCTCACGACTTCACCGGCAGGTTTAACTCCAAGCTTCCATGGAAAGAAACACTTTCTTTCAGGTACTCTGCTAAGAGCCAGAGCTCAACAGTCGTCAAGGACTACTTTGAAGTTCTACCAAGAATACTCGGAAGTGATGAACAAACTATCCAATATGGGATACTGGAGATACTGGGACTGAGCCTGGGAGTTGGGCGGGAGTACTTCAAAGAGTTCTACGGAGGAAGCGATTCGATCATGAGGTTGAACTACTATCCAATGTGCCAAAAACCAGATCTAACACTGGGAACTGGGCCTCACAGTGATCCCACTTCCTTGACGATCCTTCATCAGGATCAAGCTCTATGCAATGGGATTTACAAGAGCTGCTTCCACAGGGCTGTGGTAAACAACAAAACTGTAAGGAAATCTCTAGCTTTCTTTCTCAATCCAAACAAGGACAGAGTAGTGACTCCACCAGCAAGTTTGATCAGTGCTGATAACCCGAGGTTGTACCCAGACTTTACTTGGCCTACTCTGCTAGAGTTTACCCAGAAACATTACAGGGCTGACATGAGCACCATTGATGCCTTCTCGGACTGGATTAATAAGCAAAAGGGTGGAGAGGAAAAGAAAGACCAAAGAAACTAG

Protein Analysis

306

Amino Acids

34.47

Weight (kDa)

7.69

Isoelectric Point (pI)

30.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 50 - 116 1.1e-08 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 173 - 209 1.2e-09 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis pycom02g16160
rosa_chinensis RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 59
Acc36I ACCTGC 2 cut(s) 233, 297
AccI GTMKAC 1 cut(s) 216
AccII CGCG 1 cut(s) 197
AciI CCGC 2 cut(s) 177, 484
AclWI GGATC 4 cut(s) 176, 587, 604, 630
AcoI YGGCCR 4 cut(s) 6, 101, 131, 150
AfaI GTAC 4 cut(s) 71, 353, 491, 782
AfiI CCNNNNNNNGG 1 cut(s) 619
AgsI TTSAA 3 cut(s) 398, 496, 535
AjnI CCWGG 1 cut(s) 471
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 6 cut(s) 290, 322, 372, 629, 654, 704
AluI AGCT 6 cut(s) 290, 322, 372, 629, 654, 704
Alw21I GWGCWC 2 cut(s) 374, 848
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 4 cut(s) 176, 587, 604, 630
Ama87I CYCGRG 1 cut(s) 772
AoxI GGCC 6 cut(s) 6, 101, 131, 150, 581, 797
ApeKI GCWGC 1 cut(s) 654
AseI ATTAAT 1 cut(s) 873
Asp700I GAANNNNTTC 1 cut(s) 517
AspS9I GGNCC 3 cut(s) 106, 136, 581
AsuHPI GGTGA 2 cut(s) 28, 292
AvaI CYCGRG 1 cut(s) 772
AvaII GGWCC 2 cut(s) 106, 136
BalI TGGCCA 1 cut(s) 8
BanII GRGCYC 3 cut(s) 125, 279, 374
BauI CACGAG 1 cut(s) 110
Bbv12I GWGCWC 2 cut(s) 374, 848
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 641
BccI CCATC 2 cut(s) 161, 197
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 473
BciVI GTATCC 1 cut(s) 441
BclI TGATCA 1 cut(s) 756
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 3 cut(s) 701, 809, 916
BfuAI ACCTGC 2 cut(s) 233, 297
BfuI GTATCC 1 cut(s) 441
BglII AGATCT 1 cut(s) 562
BisI GCNGC 2 cut(s) 178, 655
BlpI GCTNAGC 1 cut(s) 30
BlsI GCNGC 2 cut(s) 179, 656
BmcAI AGTACT 1 cut(s) 491
Bme1390I CCNGG 1 cut(s) 473
Bme18I GGWCC 2 cut(s) 106, 136
BmeT110I CYCGRG 1 cut(s) 772
BmgT120I GGNCC 3 cut(s) 106, 136, 581
BmrFI CCNGG 1 cut(s) 473
BmrI ACTGGG 5 cut(s) 35, 85, 470, 581, 588
BmsI GCATC 1 cut(s) 844
BmuI ACTGGG 5 cut(s) 35, 85, 470, 581, 588
BpmI CTGGAG 1 cut(s) 473
Bpu10I CCTNAGC 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 4 cut(s) 259, 326, 472, 773
Bsc4I CCNNNNNNNGG 1 cut(s) 619
Bse118I RCCGGY 2 cut(s) 129, 302
Bse1I ACTGG 7 cut(s) 41, 91, 456, 465, 576, 583, 872
Bse3DI GCAATG 2 cut(s) 279, 643
BseBI CCWGG 1 cut(s) 473
BseDI CCNNGG 4 cut(s) 259, 326, 472, 773
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 619
BseMI GCAATG 2 cut(s) 279, 643
BseMII CTCAG 3 cut(s) 21, 187, 458
BseNI ACTGG 7 cut(s) 41, 91, 456, 465, 576, 583, 872
BseX3I CGGCCG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 641
Bsh1236I CGCG 1 cut(s) 197
Bsh1285I CGRYCG 1 cut(s) 134
BshFI GGCC 6 cut(s) 8, 103, 133, 152, 583, 799
BsiEI CGRYCG 1 cut(s) 134
BsiHKAI GWGCWC 2 cut(s) 374, 848
BsiHKCI CYCGRG 1 cut(s) 772
BsiSI CCGG 5 cut(s) 104, 130, 134, 149, 303
BslFI GGGAC 1 cut(s) 477
BslI CCNNNNNNNGG 1 cut(s) 619
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 477
BsnI GGCC 6 cut(s) 8, 103, 133, 152, 583, 799
Bso31I GGTCTC 1 cut(s) 215
BsoBI CYCGRG 1 cut(s) 772
Bsp1286I GDGCHC 4 cut(s) 125, 279, 374, 848
Bsp143I GATC 8 cut(s) 181, 268, 522, 562, 592, 609, 622, 756
Bsp1720I GCTNAGC 1 cut(s) 30
Bsp19I CCATGG 1 cut(s) 326
Bsp68I TCGCGA 1 cut(s) 197
BspACI CCGC 2 cut(s) 177, 484
BspANI GGCC 6 cut(s) 8, 103, 133, 152, 583, 799
BspCNI CTCAG 3 cut(s) 22, 186, 459
BspFNI CGCG 1 cut(s) 197
BspHI TCATGA 1 cut(s) 525
BspMI ACCTGC 2 cut(s) 233, 297
BspPI GGATC 4 cut(s) 176, 587, 604, 630
BspTNI GGTCTC 1 cut(s) 215
BsrDI GCAATG 2 cut(s) 279, 643
BsrFI RCCGGY 2 cut(s) 129, 302
BsrI ACTGG 7 cut(s) 41, 91, 456, 465, 576, 583, 872
BssAI RCCGGY 2 cut(s) 129, 302
BssECI CCNNGG 4 cut(s) 259, 326, 472, 773
BssMI GATC 8 cut(s) 181, 268, 522, 562, 592, 609, 622, 756
BssSI CACGAG 1 cut(s) 110
BssT1I CCWWGG 1 cut(s) 326
Bst2BI CACGAG 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 473
Bst4CI ACNGT 3 cut(s) 379, 590, 688
BstDEI CTNAG 4 cut(s) 30, 173, 360, 467
BstDSI CCRYGG 2 cut(s) 259, 326
BstENI CCTNNNNNAGG 1 cut(s) 617
BstF5I GGATG 1 cut(s) 81
BstFNI CGCG 1 cut(s) 197
BstKTI GATC 8 cut(s) 184, 271, 525, 565, 595, 612, 625, 759
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 8 cut(s) 181, 268, 522, 562, 592, 609, 622, 756
BstMCI CGRYCG 1 cut(s) 134
BstMWI GCNNNNNNNGC 2 cut(s) 174, 805
BstNI CCWGG 1 cut(s) 473
BstSCI CCNGG 1 cut(s) 471
BstUI CGCG 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 641
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
BstZI CGGCCG 1 cut(s) 131
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 6 cut(s) 8, 103, 133, 152, 583, 799
BtgI CCRYGG 2 cut(s) 259, 326
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 4 cut(s) 48, 569, 595, 766
BtuMI TCGCGA 1 cut(s) 197
BveI ACCTGC 2 cut(s) 233, 297
CciI TCATGA 1 cut(s) 525
Cfr10I RCCGGY 2 cut(s) 129, 302
Cfr13I GGNCC 3 cut(s) 106, 136, 581
Csp6I GTAC 4 cut(s) 70, 352, 490, 781
CviAII CATG 5 cut(s) 10, 236, 327, 526, 841
CviQI GTAC 4 cut(s) 70, 352, 490, 781
DdeI CTNAG 4 cut(s) 30, 173, 360, 467
DpnI GATC 8 cut(s) 183, 270, 524, 564, 594, 611, 624, 758
DpnII GATC 8 cut(s) 181, 268, 522, 562, 592, 609, 622, 756
DrdI GACNNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 59
EaeI YGGCCR 4 cut(s) 6, 101, 131, 150
EagI CGGCCG 1 cut(s) 131
Ecl136II GAGCTC 1 cut(s) 372
EclXI CGGCCG 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 326
Eco24I GRGCYC 3 cut(s) 125, 279, 374
Eco31I GGTCTC 1 cut(s) 215
Eco47I GGWCC 2 cut(s) 106, 136
Eco52I CGGCCG 1 cut(s) 131
Eco53kI GAGCTC 1 cut(s) 372
Eco88I CYCGRG 1 cut(s) 772
EcoICRI GAGCTC 1 cut(s) 372
EcoNI CCTNNNNNAGG 1 cut(s) 617
EcoRII CCWGG 1 cut(s) 471
EcoT14I CCWWGG 1 cut(s) 326
EcoT38I GRGCYC 3 cut(s) 125, 279, 374
ErhI CCWWGG 1 cut(s) 326
FaeI CATG 5 cut(s) 13, 239, 330, 529, 844
FaiI YATR 9 cut(s) 11, 98, 100, 237, 328, 444, 527, 634, 842
FalI AAGNNNNNCTT 6 cut(s) 324, 356, 377, 409, 641, 673
FaqI GGGAC 1 cut(s) 477
FatI CATG 5 cut(s) 9, 235, 326, 525, 840
FauI CCCGC 1 cut(s) 477
FauNDI CATATG 1 cut(s) 98
FbaI TGATCA 1 cut(s) 756
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 178, 655
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 3 cut(s) 125, 279, 374
Fsp4HI GCNGC 2 cut(s) 178, 655
FspBI CTAG 3 cut(s) 701, 809, 916
GluI GCNGC 2 cut(s) 178, 655
GsuI CTGGAG 1 cut(s) 473
HaeIII GGCC 6 cut(s) 8, 103, 133, 152, 583, 799
HapII CCGG 5 cut(s) 104, 130, 134, 149, 303
Hin1II CATG 5 cut(s) 13, 239, 330, 529, 844
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 5 cut(s) 53, 205, 240, 518, 739
HpaII CCGG 5 cut(s) 104, 130, 134, 149, 303
HphI GGTGA 2 cut(s) 28, 292
Hpy166II GTNNAC 4 cut(s) 217, 256, 676, 816
Hpy188I TCNGA 2 cut(s) 419, 865
Hpy188III TCNNGA 5 cut(s) 196, 253, 293, 526, 620
Hpy8I GTNNAC 4 cut(s) 217, 256, 676, 816
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 4 cut(s) 96, 149, 623, 868
HpyCH4III ACNGT 3 cut(s) 379, 590, 688
HpyCH4V TGCA 2 cut(s) 228, 636
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 805
HpyF3I CTNAG 4 cut(s) 30, 173, 360, 467
Hsp92II CATG 5 cut(s) 13, 239, 330, 529, 844
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 8 cut(s) 181, 268, 522, 562, 592, 609, 622, 756
LmnI GCTCC 2 cut(s) 28, 151
Lsp1109I GCAGC 1 cut(s) 641
LweI GCATC 1 cut(s) 844
MaeI CTAG 3 cut(s) 701, 809, 916
MaeIII GTNAC 2 cut(s) 16, 736
MalI GATC 8 cut(s) 183, 270, 524, 564, 594, 611, 624, 758
MboI GATC 8 cut(s) 181, 268, 522, 562, 592, 609, 622, 756
MboII GAAGA 1 cut(s) 235
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 4 cut(s) 125, 279, 374, 848
MlsI TGGCCA 1 cut(s) 8
MluNI TGGCCA 1 cut(s) 8
MlyI GAGTC 2 cut(s) 47, 733
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 8 cut(s) 170, 182, 257, 503, 522, 594, 768, 886
Mox20I TGGCCA 1 cut(s) 8
MroXI GAANNNNTTC 1 cut(s) 517
MscI TGGCCA 1 cut(s) 8
MseI TTAA 2 cut(s) 312, 873
MslI CAYNNNNRTG 1 cut(s) 14
Msp20I TGGCCA 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 177
MspI CCGG 5 cut(s) 104, 130, 134, 149, 303
MspR9I CCNGG 1 cut(s) 473
MvaI CCWGG 1 cut(s) 473
MvnI CGCG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 174, 805
NcoI CCATGG 1 cut(s) 326
NdeI CATATG 1 cut(s) 98
NdeII GATC 8 cut(s) 181, 268, 522, 562, 592, 609, 622, 756
NlaIII CATG 5 cut(s) 13, 239, 330, 529, 844
NmeAIII GCCGAG 1 cut(s) 144
NmuCI GTSAC 2 cut(s) 16, 736
NruI TCGCGA 1 cut(s) 197
PagI TCATGA 1 cut(s) 525
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PdmI GAANNNNTTC 1 cut(s) 517
PfeI GAWTC 3 cut(s) 205, 240, 518
PkrI GCNGC 2 cut(s) 179, 656
PleI GAGTC 2 cut(s) 47, 733
PpsI GAGTC 2 cut(s) 47, 733
PshBI ATTAAT 1 cut(s) 873
Psp124BI GAGCTC 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 471
PspGI CCWGG 1 cut(s) 471
PspPI GGNCC 3 cut(s) 106, 136, 581
PsuI RGATCY 1 cut(s) 562
RruI TCGCGA 1 cut(s) 197
RsaI GTAC 4 cut(s) 71, 353, 491, 782
RsaNI GTAC 4 cut(s) 70, 352, 490, 781
RseI CAYNNNNRTG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 374
SaqAI TTAA 2 cut(s) 312, 873
SatI GCNGC 2 cut(s) 178, 655
Sau3AI GATC 8 cut(s) 181, 268, 522, 562, 592, 609, 622, 756
Sau96I GGNCC 3 cut(s) 106, 136, 581
ScaI AGTACT 1 cut(s) 491
SchI GAGTC 2 cut(s) 47, 733
ScrFI CCNGG 1 cut(s) 473
SduI GDGCHC 4 cut(s) 125, 279, 374, 848
SfaNI GCATC 1 cut(s) 844
SinI GGWCC 2 cut(s) 106, 136
SmiMI CAYNNNNRTG 1 cut(s) 14
SsiI CCGC 2 cut(s) 177, 484
SspMI CTAG 3 cut(s) 701, 809, 916
SstI GAGCTC 1 cut(s) 374
StyD4I CCNGG 1 cut(s) 471
StyI CCWWGG 1 cut(s) 326
TaaI ACNGT 3 cut(s) 379, 590, 688
TaqI TCGA 4 cut(s) 51, 156, 203, 521
TaqII GACCGA 1 cut(s) 202
TatI WGTACW 1 cut(s) 489
TauI GCSGC 1 cut(s) 180
TfiI GAWTC 3 cut(s) 205, 240, 518
Tru1I TTAA 2 cut(s) 312, 873
Tru9I TTAA 2 cut(s) 312, 873
TscAI CASTG 4 cut(s) 48, 576, 595, 766
TseFI GTSAC 2 cut(s) 16, 736
TseI GCWGC 1 cut(s) 654
Tsp45I GTSAC 2 cut(s) 16, 736
TspDTI ATGAA 3 cut(s) 85, 441, 605
TspGWI ACGGA 2 cut(s) 276, 522
TspRI CASTG 4 cut(s) 48, 576, 595, 766
VpaK11BI GGWCC 2 cut(s) 106, 136
VspI ATTAAT 1 cut(s) 873
XagI CCTNNNNNAGG 1 cut(s) 617
XcmI CCANNNNNNNNNTGG 1 cut(s) 792
XmiI GTMKAC 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 517
XspI CTAG 3 cut(s) 701, 809, 916
ZrmI AGTACT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.