Rorug01G0219500

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
31328963 .. 31329706
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0219500.1

Sequence Viewer

Length: 744 bp
ATGATCTCAATGGACTCGAACCAGGCGAAACCCAGCCTACTGTGTTCCGCAGAAGCCTCTCAGTCTCAGAGAACACCGGACCCTTACGTGACTGGCACGTCTGTTGTGGCTCTCAAATACAAAGATGGAGTTCTGATGGCTGCTGATATGGGAGGTTCCTATGGATCGACCCTCAGATACAAGAGCATCGAACGAATGAAGCCTATTGGAAAGCATTCTCTTCTCGGTGCAAGTGGAGAAATCAGTGATTTCCAAGAGCTGCTACGTTATCTTGACGAGCTCACCCAACAGGACAGCATGTGTGAGGATGGAAACTCTTTGGGACCTAAAGAGATCCACAGCTACTTGACCCGTGTGATGTACAACAGGCGTAACAAGTTTGATCCGCTGTGGAACTCACTTGTGCTTGGTGGAGTGAAGAAGGGTAAGACATACCTTGGAATGGTTACTATGATAGGTGCGAACTTTGTGGACAATCATGTCGCTACCGGATTCGGAAACCACCTTGCAAGGCCAATTCTTCGTGATGAATGGCGCGAGGACTTGAGTTTCGAAGATGGTGTTAGGCTTCTTGAGAAATGCATGCGTGTCCTTTTGTATCGTGATAGGTCTGCTGTCAACAAGCTTCAGACAGCTAACATCACTAAAGAAGGTGTAACAATCTCTCAGCCCTACTCCTTGAAGACTTCCTGGAATTTCTCTGCTTTCCAAAATCCAACAGCAGGTGCTCAAGGATCATGGTAA

Protein Analysis

247

Amino Acids

27.51

Weight (kDa)

8.66

Isoelectric Point (pI)

32.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 31 - 210 9.7e-33 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis pycom02g16160
rosa_chinensis RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 713
AasI GACNNNNNNGTC 2 cut(s) 97, 479
Acc36I ACCTGC 1 cut(s) 713
AccII CGCG 1 cut(s) 537
AciI CCGC 2 cut(s) 48, 386
AclWI GGATC 4 cut(s) 172, 328, 377, 742
AcsI RAATTY 1 cut(s) 694
AcuI CTGAAG 1 cut(s) 611
AfaI GTAC 1 cut(s) 362
AfiI CCNNNNNNNGG 2 cut(s) 442, 722
AgsI TTSAA 1 cut(s) 682
AjiI CACGTC 1 cut(s) 99
AjnI CCWGG 2 cut(s) 21, 689
AluBI AGCT 5 cut(s) 259, 280, 342, 625, 635
AluI AGCT 5 cut(s) 259, 280, 342, 625, 635
Alw21I GWGCWC 2 cut(s) 282, 730
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 4 cut(s) 172, 328, 377, 742
AoxI GGCC 1 cut(s) 512
ApeKI GCWGC 2 cut(s) 140, 259
ApoI RAATTY 1 cut(s) 694
ArsI GACNNNNNNTTYG 2 cut(s) 533, 565
Asp700I GAANNNNTTC 1 cut(s) 214
AspLEI GCGC 1 cut(s) 537
AspS9I GGNCC 2 cut(s) 79, 323
AsuHPI GGTGA 1 cut(s) 274
AsuII TTCGAA 1 cut(s) 552
AvaII GGWCC 2 cut(s) 79, 323
BanII GRGCYC 1 cut(s) 282
BbsI GAAGAC 1 cut(s) 689
Bbv12I GWGCWC 2 cut(s) 282, 730
BbvI GCAGC 2 cut(s) 127, 246
BccI CCATC 4 cut(s) 119, 130, 302, 551
BciT130I CCWGG 2 cut(s) 23, 691
BcoDI GTCTC 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 713
BisI GCNGC 2 cut(s) 141, 260
BlsI GCNGC 2 cut(s) 142, 261
Bme1390I CCNGG 2 cut(s) 23, 691
Bme18I GGWCC 2 cut(s) 79, 323
BmgBI CACGTC 1 cut(s) 99
BmgT120I GGNCC 2 cut(s) 79, 323
BmiI GGNNCC 3 cut(s) 81, 157, 324
BmrFI CCNGG 2 cut(s) 23, 691
BmsI GCATC 1 cut(s) 195
BpiI GAAGAC 1 cut(s) 689
Bpu14I TTCGAA 1 cut(s) 552
BpuEI CTTGAG 3 cut(s) 565, 593, 714
BsaAI YACGTR 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 436
BsaWI WCCGGW 2 cut(s) 76, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 442, 722
Bse1I ACTGG 1 cut(s) 97
BseBI CCWGG 2 cut(s) 23, 691
BseDI CCNNGG 1 cut(s) 436
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 2 cut(s) 442, 722
BseMII CTCAG 4 cut(s) 74, 80, 187, 680
BseNI ACTGG 1 cut(s) 97
BseXI GCAGC 2 cut(s) 127, 246
BseYI CCCAGC 1 cut(s) 32
Bsh1236I CGCG 1 cut(s) 537
BshFI GGCC 1 cut(s) 514
BsiHKAI GWGCWC 2 cut(s) 282, 730
BsiSI CCGG 2 cut(s) 77, 489
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 2 cut(s) 442, 722
BsmAI GTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 336
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 1 cut(s) 514
Bsp119I TTCGAA 1 cut(s) 552
Bsp1286I GDGCHC 2 cut(s) 282, 730
Bsp1407I TGTACA 1 cut(s) 360
Bsp143I GATC 5 cut(s) 3, 164, 333, 382, 734
BspACI CCGC 2 cut(s) 48, 386
BspANI GGCC 1 cut(s) 514
BspCNI CTCAG 4 cut(s) 73, 79, 186, 679
BspFNI CGCG 1 cut(s) 537
BspLI GGNNCC 3 cut(s) 81, 157, 324
BspMI ACCTGC 1 cut(s) 713
BspPI GGATC 4 cut(s) 172, 328, 377, 742
BspT104I TTCGAA 1 cut(s) 552
BsrGI TGTACA 1 cut(s) 360
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 436
BssMI GATC 5 cut(s) 3, 164, 333, 382, 734
BssT1I CCWWGG 1 cut(s) 436
Bst2UI CCWGG 2 cut(s) 23, 691
Bst4CI ACNGT 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 225
BstAUI TGTACA 1 cut(s) 360
BstBAI YACGTR 1 cut(s) 88
BstBI TTCGAA 1 cut(s) 552
BstC8I GCNNGC 1 cut(s) 584
BstDEI CTNAG 4 cut(s) 60, 66, 173, 666
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 537
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 5 cut(s) 6, 167, 336, 385, 737
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 5 cut(s) 3, 164, 333, 382, 734
BstNI CCWGG 2 cut(s) 23, 691
BstNSI RCATGY 2 cut(s) 301, 586
BstSCI CCNGG 2 cut(s) 21, 689
BstUI CGCG 1 cut(s) 537
BstV1I GCAGC 2 cut(s) 127, 246
BstV2I GAAGAC 1 cut(s) 689
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
BsuRI GGCC 1 cut(s) 514
BtrI CACGTC 1 cut(s) 99
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 250
BveI ACCTGC 1 cut(s) 713
Cac8I GCNNGC 1 cut(s) 584
CfoI GCGC 1 cut(s) 537
Cfr13I GGNCC 2 cut(s) 79, 323
Csp6I GTAC 1 cut(s) 361
CviAII CATG 4 cut(s) 298, 479, 583, 738
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 4 cut(s) 60, 66, 173, 666
DpnI GATC 5 cut(s) 5, 166, 335, 384, 736
DpnII GATC 5 cut(s) 3, 164, 333, 382, 734
DrdI GACNNNNNNGTC 2 cut(s) 97, 479
DseDI GACNNNNNNGTC 2 cut(s) 97, 479
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 282
Eco47I GGWCC 2 cut(s) 79, 323
Eco53kI GAGCTC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 611
EcoICRI GAGCTC 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 2 cut(s) 21, 689
EcoT14I CCWWGG 1 cut(s) 436
EcoT22I ATGCAT 1 cut(s) 584
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 436
FaeI CATG 4 cut(s) 301, 482, 586, 741
FaiI YATR 8 cut(s) 149, 162, 299, 433, 452, 480, 584, 739
FaqI GGGAC 1 cut(s) 336
FatI CATG 4 cut(s) 297, 478, 582, 737
Fnu4HI GCNGC 2 cut(s) 141, 260
FokI GGATG 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 2 cut(s) 141, 260
GlaI GCGC 1 cut(s) 536
GluI GCNGC 2 cut(s) 141, 260
GsaI CCCAGC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 514
HapII CCGG 2 cut(s) 77, 489
HhaI GCGC 1 cut(s) 537
Hin1II CATG 4 cut(s) 301, 482, 586, 741
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 2 cut(s) 14, 492
HpaII CCGG 2 cut(s) 77, 489
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 472, 619
Hpy188I TCNGA 5 cut(s) 69, 135, 176, 497, 630
Hpy188III TCNNGA 4 cut(s) 272, 524, 572, 602
Hpy8I GTNNAC 2 cut(s) 472, 619
HpyAV CCTTC 2 cut(s) 415, 644
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4IV ACGT 3 cut(s) 87, 98, 265
HpyCH4V TGCA 3 cut(s) 230, 509, 582
HpyF3I CTNAG 4 cut(s) 60, 66, 173, 666
HpySE526I ACGT 3 cut(s) 87, 98, 265
Hsp92II CATG 4 cut(s) 301, 482, 586, 741
HspAI GCGC 1 cut(s) 535
Kzo9I GATC 5 cut(s) 3, 164, 333, 382, 734
Lsp1109I GCAGC 2 cut(s) 127, 246
LweI GCATC 1 cut(s) 195
MaeII ACGT 3 cut(s) 87, 98, 265
MaeIII GTNAC 4 cut(s) 88, 371, 445, 655
MalI GATC 5 cut(s) 5, 166, 335, 384, 736
MboI GATC 5 cut(s) 3, 164, 333, 382, 734
MboII GAAGA 5 cut(s) 212, 430, 512, 566, 694
MflI RGATCY 1 cut(s) 333
MhlI GDGCHC 2 cut(s) 282, 730
MluCI AATT 2 cut(s) 516, 694
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 740
MnlI CCTC 5 cut(s) 67, 146, 182, 298, 532
Mph1103I ATGCAT 1 cut(s) 584
MroXI GAANNNNTTC 1 cut(s) 214
MspA1I CMGCKG 1 cut(s) 388
MspI CCGG 2 cut(s) 77, 489
MspR9I CCNGG 2 cut(s) 23, 691
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 2 cut(s) 23, 691
MvnI CGCG 1 cut(s) 537
NdeII GATC 5 cut(s) 3, 164, 333, 382, 734
NlaIII CATG 4 cut(s) 301, 482, 586, 741
NlaIV GGNNCC 3 cut(s) 81, 157, 324
NmuCI GTSAC 1 cut(s) 88
NsiI ATGCAT 1 cut(s) 584
NspI RCATGY 2 cut(s) 301, 586
NspV TTCGAA 1 cut(s) 552
PaeI GCATGC 1 cut(s) 586
PaqCI CACCTGC 1 cut(s) 713
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PctI GAATGC 1 cut(s) 214
PdmI GAANNNNTTC 1 cut(s) 214
PfeI GAWTC 1 cut(s) 492
PfoI TCCNGGA 1 cut(s) 689
PkrI GCNGC 2 cut(s) 142, 261
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
Ppu21I YACGTR 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 323
Psp124BI GAGCTC 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 2 cut(s) 21, 689
PspFI CCCAGC 1 cut(s) 32
PspGI CCWGG 2 cut(s) 21, 689
PspN4I GGNNCC 3 cut(s) 81, 157, 324
PspPI GGNCC 2 cut(s) 79, 323
PspPPI RGGWCCY 1 cut(s) 323
PsuI RGATCY 1 cut(s) 333
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
SacI GAGCTC 1 cut(s) 282
SatI GCNGC 2 cut(s) 141, 260
Sau3AI GATC 5 cut(s) 3, 164, 333, 382, 734
Sau96I GGNCC 2 cut(s) 79, 323
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 2 cut(s) 23, 691
SduI GDGCHC 2 cut(s) 282, 730
SfaNI GCATC 1 cut(s) 195
SfuI TTCGAA 1 cut(s) 552
SinI GGWCC 2 cut(s) 79, 323
SmlI CTYRAG 3 cut(s) 544, 572, 729
SmoI CTYRAG 3 cut(s) 544, 572, 729
SphI GCATGC 1 cut(s) 586
Sse9I AATT 2 cut(s) 516, 694
SsiI CCGC 2 cut(s) 48, 386
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 2 cut(s) 21, 689
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 1 cut(s) 42
TaiI ACGT 3 cut(s) 90, 101, 268
TaqI TCGA 4 cut(s) 17, 167, 189, 552
TasI AATT 2 cut(s) 516, 694
TatI WGTACW 1 cut(s) 360
TfiI GAWTC 1 cut(s) 492
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 2 cut(s) 140, 259
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 212, 543
TspRI CASTG 1 cut(s) 250
VpaK11BI GGWCC 2 cut(s) 79, 323
XapI RAATTY 1 cut(s) 694
XceI RCATGY 2 cut(s) 301, 586
XmnI GAANNNNTTC 1 cut(s) 214
Zsp2I ATGCAT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.