Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001144.1

Orthogroup ID

OG0000462

Physical Location & Seq

Genomic Coordinates Reverse (-)

59608 .. 60129

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001144.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgttggccatgccggtgcctgctcctgctgagcaaacccctatggttttcgactcccaagttattcagtaccaatccaacattccttcccagttcatatggccggaccacgagaagccgagccccgaccggcaggaccttctctctccggctatcgacctcaacggcttcctcagcggcgaccctgccatcgtcgcgaactcaattcgttcggtcgacgaggcctgcaagaagcatggattcttcctcattgtgaaccacggagttgatccggagctcattgcgaaagctcacgagtacatggacgtgttctttgaaatgaagctctcggagaagcaaagggctcagaggaaggttggtgagagctacggttatactagtagcttcaccggcaggtttaattccaaacttccatggaaagaaacactttctttcaggtactctgctgagagccagaactcaacagtcgtcaaggactactttgtgaatgtgttgggtgaagatttcaaagaaatcgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010228 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045544 GO:0046394 GO:0048366 GO:0048367 GO:0048572 GO:0048573 GO:0048575 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

173

Amino Acids

19.56

Weight (kDa)

5.2

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca	FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica	MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica	Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis	pycom02g16160
rosa_chinensis	RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata	RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora	Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa	Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha	Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana	Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	384
AccB1I	GGYRCC	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	1 cut(s)	197
AccIII	TCCGGA	1 cut(s)	271
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	2 cut(s)	6, 101
AfaI	GTAC	3 cut(s)	71, 299, 440
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	2 cut(s)	317, 508
AhlI	ACTAGT	1 cut(s)	377
AjiI	CACGTC	1 cut(s)	307
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	5 cut(s)	277, 290, 325, 366, 384
AluI	AGCT	5 cut(s)	277, 290, 325, 366, 384
Alw21I	GWGCWC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	263
Aor13HI	TCCGGA	1 cut(s)	271
AoxI	GGCC	3 cut(s)	6, 101, 222
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AspS9I	GGNCC	2 cut(s)	106, 136
AsuHPI	GGTGA	3 cut(s)	371, 379, 509
AvaII	GGWCC	2 cut(s)	106, 136
BalI	TGGCCA	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	3 cut(s)	125, 279, 346
BauI	CACGAG	2 cut(s)	110, 293
Bbv12I	GWGCWC	1 cut(s)	279
BbvCI	CCTCAGC	1 cut(s)	173
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	181
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	1 cut(s)	378
BfuAI	ACCTGC	1 cut(s)	384
BisI	GCNGC	1 cut(s)	178
BlpI	GCTNAGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	179
Bme18I	GGWCC	2 cut(s)	106, 136
BmgBI	CACGTC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	106, 136
BmiI	GGNNCC	1 cut(s)	18
BmrI	ACTGGG	1 cut(s)	85
BmuI	ACTGGG	1 cut(s)	85
Bpu10I	CCTNAGC	1 cut(s)	173
Bpu1102I	GCTNAGC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	259, 413
BsaWI	WCCGGW	1 cut(s)	271
Bse118I	RCCGGY	3 cut(s)	13, 129, 389
Bse1I	ACTGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	279
BseAI	TCCGGA	1 cut(s)	271
BseDI	CCNNGG	2 cut(s)	259, 413
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	4 cut(s)	21, 187, 359, 438
BseNI	ACTGG	1 cut(s)	91
Bsh1236I	CGCG	1 cut(s)	197
Bsh1285I	CGRYCG	2 cut(s)	130, 216
BshFI	GGCC	3 cut(s)	8, 103, 224
BshNI	GGYRCC	1 cut(s)	16
BsiEI	CGRYCG	2 cut(s)	130, 216
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	6 cut(s)	14, 104, 130, 149, 272, 390
BsnI	GGCC	3 cut(s)	8, 103, 224
Bsp1286I	GDGCHC	3 cut(s)	125, 279, 346
Bsp13I	TCCGGA	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	268
Bsp1720I	GCTNAGC	1 cut(s)	30
Bsp19I	CCATGG	1 cut(s)	413
Bsp68I	TCGCGA	1 cut(s)	197
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	3 cut(s)	8, 103, 224
BspCNI	CTCAG	4 cut(s)	22, 186, 358, 439
BspEI	TCCGGA	1 cut(s)	271
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	384
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	3 cut(s)	13, 129, 389
BsrI	ACTGG	1 cut(s)	91
BssAI	RCCGGY	3 cut(s)	13, 129, 389
BssECI	CCNNGG	2 cut(s)	259, 413
BssMI	GATC	1 cut(s)	268
BssSI	CACGAG	2 cut(s)	110, 293
BssT1I	CCWWGG	1 cut(s)	413
Bst2BI	CACGAG	2 cut(s)	110, 293
Bst4CI	ACNGT	2 cut(s)	371, 466
BstC8I	GCNNGC	2 cut(s)	21, 226
BstDEI	CTNAG	4 cut(s)	30, 173, 345, 447
BstDSI	CCRYGG	2 cut(s)	259, 413
BstFNI	CGCG	1 cut(s)	197
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstMCI	CGRYCG	2 cut(s)	130, 216
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 194, 390
BstUI	CGCG	1 cut(s)	197
BsuRI	GGCC	3 cut(s)	8, 103, 224
BtgI	CCRYGG	2 cut(s)	259, 413
BtrI	CACGTC	1 cut(s)	307
BtuMI	TCGCGA	1 cut(s)	197
BveI	ACCTGC	1 cut(s)	384
Cac8I	GCNNGC	2 cut(s)	21, 226
Cfr10I	RCCGGY	3 cut(s)	13, 129, 389
Cfr13I	GGNCC	2 cut(s)	106, 136
Csp6I	GTAC	3 cut(s)	70, 298, 439
CviAII	CATG	4 cut(s)	10, 236, 301, 414
CviQI	GTAC	3 cut(s)	70, 298, 439
DdeI	CTNAG	4 cut(s)	30, 173, 345, 447
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
EaeI	YGGCCR	2 cut(s)	6, 101
Ecl136II	GAGCTC	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	413
Eco147I	AGGCCT	1 cut(s)	224
Eco24I	GRGCYC	3 cut(s)	125, 279, 346
Eco47I	GGWCC	2 cut(s)	106, 136
Eco53kI	GAGCTC	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	413
EcoT38I	GRGCYC	3 cut(s)	125, 279, 346
ErhI	CCWWGG	1 cut(s)	413
FaeI	CATG	4 cut(s)	13, 239, 304, 417
FaiI	YATR	8 cut(s)	11, 44, 98, 100, 237, 302, 375, 415
FalI	AAGNNNNNCTT	4 cut(s)	411, 443, 464, 496
FatI	CATG	4 cut(s)	9, 235, 300, 413
FauNDI	CATATG	1 cut(s)	98
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	178
FriOI	GRGCYC	3 cut(s)	125, 279, 346
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	1 cut(s)	178
HaeIII	GGCC	3 cut(s)	8, 103, 224
HapII	CCGG	6 cut(s)	14, 104, 130, 149, 272, 390
Hin1II	CATG	4 cut(s)	13, 239, 304, 417
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HinfI	GANTC	2 cut(s)	53, 240
HpaII	CCGG	6 cut(s)	14, 104, 130, 149, 272, 390
HphI	GGTGA	3 cut(s)	371, 379, 509
Hpy166II	GTNNAC	2 cut(s)	217, 256
Hpy188I	TCNGA	2 cut(s)	331, 348
Hpy188III	TCNNGA	3 cut(s)	196, 272, 293
Hpy8I	GTNNAC	2 cut(s)	217, 256
Hpy99I	CGWCG	2 cut(s)	197, 221
HpyAV	CCTTC	3 cut(s)	96, 149, 346
HpyCH4III	ACNGT	2 cut(s)	371, 466
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 194, 390
HpyF3I	CTNAG	4 cut(s)	30, 173, 345, 447
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	4 cut(s)	13, 239, 304, 417
Kpn2I	TCCGGA	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	2 cut(s)	28, 274
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	1 cut(s)	306
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	2 cut(s)	235, 512
MhlI	GDGCHC	3 cut(s)	125, 279, 346
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	2 cut(s)	204, 400
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	5 cut(s)	170, 182, 214, 257, 342
Mox20I	TGGCCA	1 cut(s)	8
MroI	TCCGGA	1 cut(s)	271
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	1 cut(s)	399
MslI	CAYNNNNRTG	2 cut(s)	14, 305
Msp20I	TGGCCA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	6 cut(s)	14, 104, 130, 149, 272, 390
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	3 cut(s)	174, 194, 390
NcoI	CCATGG	1 cut(s)	413
NdeI	CATATG	1 cut(s)	98
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	4 cut(s)	13, 239, 304, 417
NlaIV	GGNNCC	1 cut(s)	18
NmeAIII	GCCGAG	1 cut(s)	144
NruI	TCGCGA	1 cut(s)	197
PceI	AGGCCT	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	240
PkrI	GCNGC	1 cut(s)	179
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PpuMI	RGGWCCY	1 cut(s)	136
Psp124BI	GAGCTC	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	2 cut(s)	106, 136
PspPPI	RGGWCCY	1 cut(s)	136
RruI	TCGCGA	1 cut(s)	197
RsaI	GTAC	3 cut(s)	71, 299, 440
RsaNI	GTAC	3 cut(s)	70, 298, 439
RseI	CAYNNNNRTG	2 cut(s)	14, 305
SacI	GAGCTC	1 cut(s)	279
SalI	GTCGAC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	2 cut(s)	106, 136
SchI	GAGTC	1 cut(s)	47
SduI	GDGCHC	3 cut(s)	125, 279, 346
SinI	GGWCC	2 cut(s)	106, 136
SmiMI	CAYNNNNRTG	2 cut(s)	14, 305
SpeI	ACTAGT	1 cut(s)	377
Sse9I	AATT	2 cut(s)	204, 400
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	378
SstI	GAGCTC	1 cut(s)	279
StuI	AGGCCT	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	413
TaaI	ACNGT	2 cut(s)	371, 466
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	3 cut(s)	51, 156, 216
TaqII	GACCGA	1 cut(s)	202
TasI	AATT	2 cut(s)	204, 400
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TspDTI	ATGAA	2 cut(s)	85, 335
TspGWI	ACGGA	1 cut(s)	276
VpaK11BI	GGWCC	2 cut(s)	106, 136
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.