Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001144.1

Orthogroup ID

OG0000462

Physical Location & Seq

Genomic Coordinates Reverse (-)

74414 .. 75553

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001144.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atgtggtcatgccggtgcctgctgctgctaaacccctgtggttttcgactcccaagttattcagtaccaatccaacatcccttccaagttcatatagccggaccacgagaagccgagccccaaccggccggccttctcgctccggccatcgacctcagaagcgattctgccatcgtcgcgaactcgattcgttcggtcgacgaggcctgcaagaagcatggattcttcctcattgtgaaccacggagttgatccggtgctttttgcgaaagctcacgagtacatggacgtgttctttgagatgaagctctcggagaagcaaagggctcagaggaagattggtgagagcaatggttattctagtagcttcaccggcaggtttaactccaagcttccatggaaagaaacactttctttcaggtactctgctgagaggcagagcttaacagtcgtcaaggactactttgtgaatgtgttgggtgaagatttcagagaaatcgggaagttctaccaagaatacttggaggtgatgaacaaactatccaatgggatactggagctactgggactgagcctgggagttgggcaggagtacttcaaagagttctacgaaggaaacaattcgatcattaggttgaacgactatccaatgtgccaaaaaccagatttaacactgggaactgggcctcgctgtgatcccacttccttgataatccttcatcaggatcaagtagggggacttgaagtgtttttcgatgagaagtggcacaccgttactcctgtccatggttctttcgttgtcaacattggtgatacttttatggtaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010228 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045544 GO:0046394 GO:0048366 GO:0048367 GO:0048572 GO:0048573 GO:0048575 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

276

Amino Acids

31.23

Weight (kDa)

5.92

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca	FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica	MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica	Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis	pycom02g16160
rosa_chinensis	RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata	RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora	Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa	Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha	Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana	Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	366
AccB1I	GGYRCC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	1 cut(s)	179
AclWI	GGATC	3 cut(s)	245, 689, 732
AcoI	YGGCCR	2 cut(s)	126, 144
AfaI	GTAC	4 cut(s)	66, 281, 422, 593
AfiI	CCNNNNNNNGG	2 cut(s)	721, 785
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	3 cut(s)	598, 637, 743
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	573
AloI	GAACNNNNNNTCC	2 cut(s)	524, 556
AluBI	AGCT	6 cut(s)	272, 307, 366, 391, 441, 559
AluI	AGCT	6 cut(s)	272, 307, 366, 391, 441, 559
AlwI	GGATC	3 cut(s)	245, 689, 732
AoxI	GGCC	5 cut(s)	126, 130, 144, 204, 683
ApeKI	GCWGC	2 cut(s)	22, 25
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
Asp700I	GAANNNNTTC	2 cut(s)	163, 619
AspS9I	GGNCC	2 cut(s)	101, 683
AsuHPI	GGTGA	5 cut(s)	353, 361, 491, 538, 821
AvaII	GGWCC	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	15
BanII	GRGCYC	2 cut(s)	120, 328
BauI	CACGAG	2 cut(s)	105, 275
BbvI	GCAGC	2 cut(s)	9, 12
BccI	CCATC	2 cut(s)	155, 179
BciT130I	CCWGG	1 cut(s)	575
BciVI	GTATCC	1 cut(s)	543
BfaI	CTAG	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	366
BfuI	GTATCC	1 cut(s)	543
BisI	GCNGC	2 cut(s)	23, 26
BlsI	GCNGC	2 cut(s)	24, 27
BmcAI	AGTACT	1 cut(s)	593
Bme1390I	CCNGG	1 cut(s)	575
Bme18I	GGWCC	1 cut(s)	101
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	2 cut(s)	101, 683
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	575
BmrI	ACTGGG	3 cut(s)	572, 683, 690
BmuI	ACTGGG	3 cut(s)	572, 683, 690
BpmI	CTGGAG	1 cut(s)	575
BsaJI	CCNNGG	4 cut(s)	241, 395, 574, 784
BsaWI	WCCGGW	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	760, 790
Bsc4I	CCNNNNNNNGG	2 cut(s)	721, 785
Bse118I	RCCGGY	4 cut(s)	12, 124, 128, 371
Bse1I	ACTGG	4 cut(s)	558, 567, 678, 685
Bse3DI	GCAATG	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	4 cut(s)	241, 395, 574, 784
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	2 cut(s)	721, 785
BseMI	GCAATG	1 cut(s)	355
BseMII	CTCAG	4 cut(s)	169, 341, 420, 560
BseNI	ACTGG	4 cut(s)	558, 567, 678, 685
BseX3I	CGGCCG	1 cut(s)	126
BseXI	GCAGC	2 cut(s)	9, 12
Bsh1236I	CGCG	1 cut(s)	179
Bsh1285I	CGRYCG	2 cut(s)	129, 198
BshFI	GGCC	5 cut(s)	128, 132, 146, 206, 685
BshNI	GGYRCC	1 cut(s)	15
BsiEI	CGRYCG	2 cut(s)	129, 198
BsiSI	CCGG	7 cut(s)	13, 99, 125, 129, 143, 254, 372
BslFI	GGGAC	2 cut(s)	579, 750
BslI	CCNNNNNNNGG	2 cut(s)	721, 785
BsmFI	GGGAC	2 cut(s)	579, 750
BsnI	GGCC	5 cut(s)	128, 132, 146, 206, 685
Bsp1286I	GDGCHC	2 cut(s)	120, 328
Bsp143I	GATC	4 cut(s)	250, 624, 694, 724
Bsp19I	CCATGG	2 cut(s)	395, 784
Bsp68I	TCGCGA	1 cut(s)	179
BspANI	GGCC	5 cut(s)	128, 132, 146, 206, 685
BspCNI	CTCAG	4 cut(s)	168, 340, 421, 561
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	1 cut(s)	17
BspMI	ACCTGC	1 cut(s)	366
BspPI	GGATC	3 cut(s)	245, 689, 732
BspT107I	GGYRCC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	355
BsrFI	RCCGGY	4 cut(s)	12, 124, 128, 371
BsrI	ACTGG	4 cut(s)	558, 567, 678, 685
BssAI	RCCGGY	4 cut(s)	12, 124, 128, 371
BssECI	CCNNGG	4 cut(s)	241, 395, 574, 784
BssMI	GATC	4 cut(s)	250, 624, 694, 724
BssSI	CACGAG	2 cut(s)	105, 275
BssT1I	CCWWGG	2 cut(s)	395, 784
Bst2BI	CACGAG	2 cut(s)	105, 275
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	2 cut(s)	448, 772
BstC8I	GCNNGC	3 cut(s)	20, 130, 208
BstDEI	CTNAG	4 cut(s)	155, 327, 429, 569
BstDSI	CCRYGG	3 cut(s)	241, 395, 784
BstENI	CCTNNNNNAGG	1 cut(s)	719
BstF5I	GGATG	1 cut(s)	76
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	4 cut(s)	253, 627, 697, 727
BstMBI	GATC	4 cut(s)	250, 624, 694, 724
BstMCI	CGRYCG	2 cut(s)	129, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 372
BstNI	CCWGG	1 cut(s)	575
BstSCI	CCNGG	1 cut(s)	573
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	9, 12
BstZI	CGGCCG	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	543
BsuRI	GGCC	5 cut(s)	128, 132, 146, 206, 685
BtgI	CCRYGG	3 cut(s)	241, 395, 784
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	671
BtuMI	TCGCGA	1 cut(s)	179
BveI	ACCTGC	1 cut(s)	366
Cac8I	GCNNGC	3 cut(s)	20, 130, 208
Cfr10I	RCCGGY	4 cut(s)	12, 124, 128, 371
Cfr13I	GGNCC	2 cut(s)	101, 683
Csp6I	GTAC	4 cut(s)	65, 280, 421, 592
CviAII	CATG	5 cut(s)	9, 218, 283, 396, 785
CviQI	GTAC	4 cut(s)	65, 280, 421, 592
DdeI	CTNAG	4 cut(s)	155, 327, 429, 569
DpnI	GATC	4 cut(s)	252, 626, 696, 726
DpnII	GATC	4 cut(s)	250, 624, 694, 724
EaeI	YGGCCR	2 cut(s)	126, 144
EagI	CGGCCG	1 cut(s)	126
EclXI	CGGCCG	1 cut(s)	126
Eco130I	CCWWGG	2 cut(s)	395, 784
Eco147I	AGGCCT	1 cut(s)	206
Eco24I	GRGCYC	2 cut(s)	120, 328
Eco47I	GGWCC	1 cut(s)	101
Eco52I	CGGCCG	1 cut(s)	126
EcoNI	CCTNNNNNAGG	1 cut(s)	719
EcoRII	CCWGG	1 cut(s)	573
EcoT14I	CCWWGG	2 cut(s)	395, 784
EcoT38I	GRGCYC	2 cut(s)	120, 328
ErhI	CCWWGG	2 cut(s)	395, 784
FaeI	CATG	5 cut(s)	12, 221, 286, 399, 788
FaiI	YATR	8 cut(s)	10, 93, 95, 219, 284, 397, 786, 821
FalI	AAGNNNNNCTT	4 cut(s)	393, 425, 446, 478
FaqI	GGGAC	2 cut(s)	579, 750
FatI	CATG	5 cut(s)	8, 217, 282, 395, 784
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	2 cut(s)	23, 26
FokI	GGATG	1 cut(s)	63
FriOI	GRGCYC	2 cut(s)	120, 328
FseI	GGCCGGCC	1 cut(s)	132
Fsp4HI	GCNGC	2 cut(s)	23, 26
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	2 cut(s)	23, 26
GsuI	CTGGAG	1 cut(s)	575
HaeIII	GGCC	5 cut(s)	128, 132, 146, 206, 685
HapII	CCGG	7 cut(s)	13, 99, 125, 129, 143, 254, 372
Hin1II	CATG	5 cut(s)	12, 221, 286, 399, 788
HincII	GTYRAC	2 cut(s)	199, 802
HindII	GTYRAC	2 cut(s)	199, 802
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	4 cut(s)	48, 164, 187, 222
HpaII	CCGG	7 cut(s)	13, 99, 125, 129, 143, 254, 372
HphI	GGTGA	5 cut(s)	353, 361, 491, 538, 821
Hpy166II	GTNNAC	3 cut(s)	199, 238, 802
Hpy188I	TCNGA	4 cut(s)	158, 313, 330, 491
Hpy188III	TCNNGA	4 cut(s)	178, 275, 499, 722
Hpy8I	GTNNAC	3 cut(s)	199, 238, 802
Hpy99I	CGWCG	2 cut(s)	179, 203
HpyAV	CCTTC	4 cut(s)	91, 143, 605, 725
HpyCH4III	ACNGT	2 cut(s)	448, 772
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 372
HpyF3I	CTNAG	4 cut(s)	155, 327, 429, 569
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	5 cut(s)	12, 221, 286, 399, 788
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
Kzo9I	GATC	4 cut(s)	250, 624, 694, 724
LmnI	GCTCC	2 cut(s)	145, 556
Lsp1109I	GCAGC	2 cut(s)	9, 12
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	772
MalI	GATC	4 cut(s)	252, 626, 696, 726
MboI	GATC	4 cut(s)	250, 624, 694, 724
MboII	GAAGA	3 cut(s)	217, 346, 494
MhlI	GDGCHC	2 cut(s)	120, 328
MluCI	AATT	1 cut(s)	619
MlyI	GAGTC	1 cut(s)	42
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	7 cut(s)	164, 196, 239, 324, 426, 517, 696
MroNI	GCCGGC	1 cut(s)	128
MroXI	GAANNNNTTC	2 cut(s)	163, 619
MseI	TTAA	4 cut(s)	381, 443, 668, 829
MslI	CAYNNNNRTG	2 cut(s)	13, 287
MspI	CCGG	7 cut(s)	13, 99, 125, 129, 143, 254, 372
MspR9I	CCNGG	1 cut(s)	575
MvaI	CCWGG	1 cut(s)	575
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	176, 372
NaeI	GCCGGC	1 cut(s)	130
NcoI	CCATGG	2 cut(s)	395, 784
NdeII	GATC	4 cut(s)	250, 624, 694, 724
NgoMIV	GCCGGC	1 cut(s)	128
NlaIII	CATG	5 cut(s)	12, 221, 286, 399, 788
NlaIV	GGNNCC	1 cut(s)	17
NmeAIII	GCCGAG	1 cut(s)	139
NruI	TCGCGA	1 cut(s)	179
PceI	AGGCCT	1 cut(s)	206
PdiI	GCCGGC	1 cut(s)	130
PdmI	GAANNNNTTC	2 cut(s)	163, 619
PfeI	GAWTC	3 cut(s)	164, 187, 222
PkrI	GCNGC	2 cut(s)	24, 27
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	2 cut(s)	101, 683
RigI	GGCCGGCC	1 cut(s)	132
RruI	TCGCGA	1 cut(s)	179
RsaI	GTAC	4 cut(s)	66, 281, 422, 593
RsaNI	GTAC	4 cut(s)	65, 280, 421, 592
RseI	CAYNNNNRTG	2 cut(s)	13, 287
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	4 cut(s)	381, 443, 668, 829
SatI	GCNGC	2 cut(s)	23, 26
Sau3AI	GATC	4 cut(s)	250, 624, 694, 724
Sau96I	GGNCC	2 cut(s)	101, 683
ScaI	AGTACT	1 cut(s)	593
SchI	GAGTC	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	575
SduI	GDGCHC	2 cut(s)	120, 328
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	2 cut(s)	13, 287
Sse9I	AATT	1 cut(s)	619
SseBI	AGGCCT	1 cut(s)	206
SspMI	CTAG	1 cut(s)	360
StuI	AGGCCT	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	573
StyI	CCWWGG	2 cut(s)	395, 784
TaaI	ACNGT	2 cut(s)	448, 772
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	6 cut(s)	46, 150, 185, 198, 623, 753
TaqII	GACCGA	1 cut(s)	184
TasI	AATT	1 cut(s)	619
TatI	WGTACW	2 cut(s)	279, 591
TfiI	GAWTC	3 cut(s)	164, 187, 222
Tru1I	TTAA	4 cut(s)	381, 443, 668, 829
Tru9I	TTAA	4 cut(s)	381, 443, 668, 829
TscAI	CASTG	1 cut(s)	678
TseI	GCWGC	2 cut(s)	22, 25
TspDTI	ATGAA	4 cut(s)	80, 317, 545, 707
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	1 cut(s)	678
VpaK11BI	GGWCC	1 cut(s)	101
XagI	CCTNNNNNAGG	1 cut(s)	719
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	2 cut(s)	163, 619
XspI	CTAG	1 cut(s)	360
ZrmI	AGTACT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.