Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000462

Physical Location & Seq

Genomic Coordinates Reverse (-)

49971623 .. 49973852

Gene Structure 2230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG369400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCAATTGAGTGCATGAAAACCCTAAATCACCACAAAGAAGATGACCAAAAGCCACTAGTCTTCGACGCTTCGTTGCTCCGGTACCAAACTGACATACCCAAGCAGTTCATTTGGCCCGACGACGAAAAGCCATGTCCTAACGCACCAGAATTACAAGTCCCACTCATAGACTTGGGCGACTTCCTCTCCGGCAACCCCGAGGCAGCAATGAAAGCCTCGAGGCTCGTCGGAGAAGCCTGCGAAAAGCATGGCTTCTTTCTCGTCGTGAATCACGGCGTTAAAGGCAGTCTCATAGCTGATGCACACCAATACATGGACGACTTCTTTGGTTTGCCCCTCTCTGAAAAACAGAGGGCTCAGAGGAAAGCCGCCGAGCACTGCGGCTACGCCAGTAGCTTCACCGGAAGGTTCTCGTCAAAACTCCCCTGGAAAGAAACTCTGTCGTTTCGCTACACCGCGGACCAAAGCGAGTCCAATGTTGTTAAAAATTACCTCTGCAATGCTATGGGAGAAGACTTCGAAGAATTCGGGAGGGTGTACCAAGACTATAGTGAGGCTATGAGCACACTTTCCATAGGGATTATGGAGCTTTTGGGAATGAGTCTCGGCGTGGACAGAACACATTTCAAGGAATTTTTCGGAGACAATGATTCGATAATGAGGTTGAATTACTATCCACCGTGCCAGAAACCAGACCAGACTTTAGGCACCGGACCTCATTGTGATCCGACCTCCTTAACCATTCTTCACCAAGACCAAGTGGGGGGACTTCAAGTGTTTGTGGACGAAGAATGGCGCTCGATCAGCCCGAATTTGAACGCCTTTGTTGTTAACATTGGTGACACCTTCATGGTAATTAAGCTCGCCCCTCGATATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009648 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010228 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045544 GO:0046394 GO:0048366 GO:0048367 GO:0048572 GO:0048573 GO:0048575 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080167 GO:0090567 GO:0099402 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

294

Amino Acids

33.23

Weight (kDa)

5.04

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	54 - 159	1.1e-25	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	218 - 287	1.7e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca	FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica	MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica	Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis	pycom02g16160
rosa_chinensis	RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata	RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora	Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa	Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha	Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana	Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	220
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	2 cut(s)	84, 710
AccB7I	CCANNNNNTGG	1 cut(s)	316
AccII	CGCG	1 cut(s)	461
AciI	CCGC	4 cut(s)	372, 384, 459, 461
AclWI	GGATC	1 cut(s)	722
AcsI	RAATTY	3 cut(s)	527, 635, 814
AfaI	GTAC	2 cut(s)	86, 542
AfiI	CCNNNNNNNGG	2 cut(s)	316, 766
AgsI	TTSAA	4 cut(s)	631, 670, 776, 820
AhlI	ACTAGT	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	428
AluBI	AGCT	4 cut(s)	299, 399, 592, 865
AluI	AGCT	4 cut(s)	299, 399, 592, 865
Alw21I	GWGCWC	2 cut(s)	381, 569
Alw26I	GTCTC	3 cut(s)	296, 611, 639
AlwI	GGATC	1 cut(s)	722
Ama87I	CYCGRG	2 cut(s)	200, 220
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	3 cut(s)	527, 635, 814
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
Asp718I	GGTACC	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	801
AspS9I	GGNCC	3 cut(s)	117, 463, 716
AsuHPI	GGTGA	4 cut(s)	23, 394, 743, 854
AsuII	TTCGAA	1 cut(s)	522
AvaI	CYCGRG	2 cut(s)	200, 220
AvaII	GGWCC	2 cut(s)	463, 716
BanI	GGYRCC	2 cut(s)	84, 710
BanII	GRGCYC	1 cut(s)	361
BbsI	GAAGAC	2 cut(s)	55, 522
Bbv12I	GWGCWC	2 cut(s)	381, 569
BbvI	GCAGC	1 cut(s)	218
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	430
BcoDI	GTCTC	3 cut(s)	296, 611, 639
BcuI	ACTAGT	1 cut(s)	58
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	550
BfoI	RGCGCY	1 cut(s)	802
BisI	GCNGC	3 cut(s)	207, 372, 385
BlsI	GCNGC	3 cut(s)	208, 373, 386
Bme1390I	CCNGG	1 cut(s)	430
Bme18I	GGWCC	2 cut(s)	463, 716
BmeT110I	CYCGRG	2 cut(s)	200, 220
BmgT120I	GGNCC	3 cut(s)	117, 463, 716
BmiI	GGNNCC	2 cut(s)	86, 712
BmrFI	CCNGG	1 cut(s)	430
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	2 cut(s)	55, 522
Bpu14I	TTCGAA	1 cut(s)	522
BsaJI	CCNNGG	3 cut(s)	201, 428, 459
BsaWI	WCCGGW	3 cut(s)	81, 404, 713
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	316, 766
Bse1I	ACTGG	1 cut(s)	393
Bse3DI	GCAATG	2 cut(s)	216, 508
BseBI	CCWGG	1 cut(s)	430
BseDI	CCNNGG	3 cut(s)	201, 428, 459
BseLI	CCNNNNNNNGG	2 cut(s)	316, 766
BseMI	GCAATG	2 cut(s)	216, 508
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	1 cut(s)	393
BseXI	GCAGC	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	461
BshFI	GGCC	1 cut(s)	118
BshNI	GGYRCC	2 cut(s)	84, 710
BsiHKAI	GWGCWC	2 cut(s)	381, 569
BsiHKCI	CYCGRG	2 cut(s)	200, 220
BsiSI	CCGG	4 cut(s)	82, 192, 405, 714
BslFI	GGGAC	2 cut(s)	146, 783
BslI	CCNNNNNNNGG	2 cut(s)	316, 766
BsmAI	GTCTC	3 cut(s)	296, 611, 639
BsmFI	GGGAC	2 cut(s)	146, 783
BsnI	GGCC	1 cut(s)	118
BsoBI	CYCGRG	2 cut(s)	200, 220
Bsp119I	TTCGAA	1 cut(s)	522
Bsp1286I	GDGCHC	3 cut(s)	361, 381, 569
Bsp143I	GATC	2 cut(s)	727, 804
BspACI	CCGC	4 cut(s)	372, 384, 459, 461
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	1 cut(s)	373
BspFNI	CGCG	1 cut(s)	461
BspLI	GGNNCC	2 cut(s)	86, 712
BspPI	GGATC	1 cut(s)	722
BspT104I	TTCGAA	1 cut(s)	522
BspT107I	GGYRCC	2 cut(s)	84, 710
BsrDI	GCAATG	2 cut(s)	216, 508
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	3 cut(s)	201, 428, 459
BssMI	GATC	2 cut(s)	727, 804
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	1 cut(s)	684
BstBI	TTCGAA	1 cut(s)	522
BstC8I	GCNNGC	2 cut(s)	241, 867
BstDEI	CTNAG	1 cut(s)	360
BstDSI	CCRYGG	1 cut(s)	459
BstFNI	CGCG	1 cut(s)	461
BstH2I	RGCGCY	1 cut(s)	802
BstHHI	GCGC	1 cut(s)	801
BstKTI	GATC	2 cut(s)	730, 807
BstMAI	GTCTC	3 cut(s)	296, 611, 639
BstMBI	GATC	2 cut(s)	727, 804
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 285, 807
BstNI	CCWGG	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	428
BstSFI	CTRYAG	1 cut(s)	550
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	1 cut(s)	218
BstV2I	GAAGAC	2 cut(s)	55, 522
BsuRI	GGCC	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	459
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	2 cut(s)	241, 867
CfoI	GCGC	1 cut(s)	801
Cfr13I	GGNCC	3 cut(s)	117, 463, 716
Cfr42I	CCGCGG	1 cut(s)	462
CseI	GACGC	1 cut(s)	77
Csp6I	GTAC	2 cut(s)	85, 541
CviAII	CATG	5 cut(s)	16, 135, 251, 316, 853
CviQI	GTAC	2 cut(s)	85, 541
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	2 cut(s)	729, 806
DpnII	GATC	2 cut(s)	727, 804
Eco24I	GRGCYC	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	463, 716
Eco88I	CYCGRG	2 cut(s)	200, 220
EcoRI	GAATTC	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	361
FaeI	CATG	5 cut(s)	19, 138, 254, 319, 856
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	2 cut(s)	146, 783
FatI	CATG	5 cut(s)	15, 134, 250, 315, 852
Fnu4HI	GCNGC	3 cut(s)	207, 372, 385
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	3 cut(s)	207, 372, 385
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	800
GluI	GCNGC	3 cut(s)	207, 372, 385
HaeII	RGCGCY	1 cut(s)	802
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	4 cut(s)	82, 192, 405, 714
HgaI	GACGC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	801
Hin1II	CATG	5 cut(s)	19, 138, 254, 319, 856
Hin6I	GCGC	1 cut(s)	799
HinP1I	GCGC	1 cut(s)	799
HincII	GTYRAC	1 cut(s)	835
HindII	GTYRAC	1 cut(s)	835
HinfI	GANTC	4 cut(s)	271, 473, 604, 653
HpaI	GTTAAC	1 cut(s)	835
HpaII	CCGG	4 cut(s)	82, 192, 405, 714
HphI	GGTGA	4 cut(s)	23, 394, 743, 854
Hpy166II	GTNNAC	4 cut(s)	541, 616, 787, 835
Hpy188I	TCNGA	5 cut(s)	233, 346, 363, 644, 732
Hpy188III	TCNNGA	2 cut(s)	268, 532
Hpy8I	GTNNAC	4 cut(s)	541, 616, 787, 835
Hpy99I	CGWCG	5 cut(s)	71, 125, 128, 233, 269
HpyAV	CCTTC	2 cut(s)	402, 859
HpyCH4III	ACNGT	1 cut(s)	684
HpyCH4V	TGCA	3 cut(s)	15, 305, 501
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 285, 807
HpyF3I	CTNAG	1 cut(s)	360
Hsp92II	CATG	5 cut(s)	19, 138, 254, 319, 856
HspAI	GCGC	1 cut(s)	799
KpnI	GGTACC	1 cut(s)	88
KspAI	GTTAAC	1 cut(s)	835
KspI	CCGCGG	1 cut(s)	462
Kzo9I	GATC	2 cut(s)	727, 804
LmnI	GCTCC	2 cut(s)	84, 589
Lsp1109I	GCAGC	1 cut(s)	218
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	842
MalI	GATC	2 cut(s)	729, 806
MboI	GATC	2 cut(s)	727, 804
MboII	GAAGA	6 cut(s)	53, 55, 527, 536, 740, 803
MfeI	CAATTG	1 cut(s)	6
MhlI	GDGCHC	3 cut(s)	361, 381, 569
MluCI	AATT	8 cut(s)	6, 152, 490, 527, 635, 670, 814, 858
MlyI	GAGTC	2 cut(s)	482, 613
MmeI	TCCRAC	2 cut(s)	211, 755
MseI	TTAA	5 cut(s)	282, 486, 740, 834, 861
MslI	CAYNNNNRTG	1 cut(s)	851
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	4 cut(s)	82, 192, 405, 714
MspR9I	CCNGG	1 cut(s)	430
MunI	CAATTG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	430
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	3 cut(s)	215, 285, 807
NdeII	GATC	2 cut(s)	727, 804
NlaIII	CATG	5 cut(s)	19, 138, 254, 319, 856
NlaIV	GGNNCC	2 cut(s)	86, 712
NmeAIII	GCCGAG	2 cut(s)	400, 588
NmuCI	GTSAC	1 cut(s)	842
NspV	TTCGAA	1 cut(s)	522
PaeR7I	CTCGAG	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	1 cut(s)	809
PfeI	GAWTC	2 cut(s)	271, 653
PflMI	CCANNNNNTGG	1 cut(s)	316
PkrI	GCNGC	3 cut(s)	208, 373, 386
PleI	GAGTC	2 cut(s)	481, 612
PpsI	GAGTC	2 cut(s)	481, 612
Psp6I	CCWGG	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	2 cut(s)	86, 712
PspPI	GGNCC	3 cut(s)	117, 463, 716
PspXI	VCTCGAGB	1 cut(s)	220
RsaI	GTAC	2 cut(s)	86, 542
RsaNI	GTAC	2 cut(s)	85, 541
RseI	CAYNNNNRTG	1 cut(s)	851
SacII	CCGCGG	1 cut(s)	462
SaqAI	TTAA	5 cut(s)	282, 486, 740, 834, 861
SatI	GCNGC	3 cut(s)	207, 372, 385
Sau3AI	GATC	2 cut(s)	727, 804
Sau96I	GGNCC	3 cut(s)	117, 463, 716
SchI	GAGTC	2 cut(s)	482, 613
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	3 cut(s)	361, 381, 569
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	1 cut(s)	550
Sfr274I	CTCGAG	1 cut(s)	220
Sfr303I	CCGCGG	1 cut(s)	462
SfuI	TTCGAA	1 cut(s)	522
SgrBI	CCGCGG	1 cut(s)	462
SinI	GGWCC	2 cut(s)	463, 716
SlaI	CTCGAG	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	851
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SpeI	ACTAGT	1 cut(s)	58
Sse9I	AATT	8 cut(s)	6, 152, 490, 527, 635, 670, 814, 858
SsiI	CCGC	4 cut(s)	372, 384, 459, 461
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	428
TaaI	ACNGT	1 cut(s)	684
TaqI	TCGA	6 cut(s)	66, 221, 522, 656, 803, 874
TasI	AATT	8 cut(s)	6, 152, 490, 527, 635, 670, 814, 858
TauI	GCSGC	2 cut(s)	374, 387
TfiI	GAWTC	2 cut(s)	271, 653
Tru1I	TTAA	5 cut(s)	282, 486, 740, 834, 861
Tru9I	TTAA	5 cut(s)	282, 486, 740, 834, 861
TscAI	CASTG	1 cut(s)	386
TseFI	GTSAC	1 cut(s)	842
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	842
TspDTI	ATGAA	4 cut(s)	32, 100, 227, 841
TspRI	CASTG	1 cut(s)	386
Van91I	CCANNNNNTGG	1 cut(s)	316
VpaK11BI	GGWCC	2 cut(s)	463, 716
XapI	RAATTY	3 cut(s)	527, 635, 814
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583
XhoI	CTCGAG	1 cut(s)	220
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.