Rorug01G0219300

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
31320092 .. 31323677
3586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0219300.1

Sequence Viewer

Length: 1053 bp
ATGGCGGAGCCCGGCGAAATGCCCATATACCCCCAACAAATCCAAATGCCACCCACCTTCATACCCATACCCGCCTCCCAACCCGCGCACCTGCCCTCCATGAAGCGCCGCCGCGACGACGATTTTCCGCCGATGCAAATCGGGCCGGAACCCCTGGACCCAGCCCCAAAGCGCCGGGCCAAGGCCCAAGACGTCATCTTCAGAGTCGTGGTCCCGTCCAGACAGATCGGCAAGGTCATCGGCAAAGAAGGCTGCCGAATCCAGAAGATTCGTGAAGACTCCAAGGCCACCATCAAAATCGCCGACGCCATAGCTCGACACGAGGAGCGTGTGATTATAATTAGCTCAAAGGATGGTGATGAAGGTACTACTGATGCCGAGAATGCGCTGCAGCAAATAGCTGGCTTAATTCTTAAGGATGATGAGAATAGTGCTGATGCGGCAAAAGTTGGTGCGGGACATGTGGCTGCGAATACGATAAGACTTTTGATTGCTGGTTCCCAAGCAGGTTCTTTAATTGGGATGTCTGGTCAGAATATTGAGAAACTGAGGAACTCCTCTGGGGCCACAATCACAATCCTTGCTCCAAGCCAGTTGCCTTTGTGTGCTTCTGCGCATGAATCCGATCGAGTGATACAGATATCAGGTGATGTCCCTGCTGTTCAGAAAGGTCTGGAGGAGATTGGTTGTCAACTAAGAGAAAACCCGCCTCGGCAAGTGATTTCTATCAGTCCCGCCTATAACTATACAGCAATTAGGCCACCTCAAGTTCAACCATACATGGACCCAACTTCAGCTGAATATATAACTTTCGAGATGTTGATATCGGAAACAATGGTTGGTGGGTTGATTGGTAGATGCGGCTCCAACATTTCAAGGATTAGAAATGAGTCTGGCGCAATGATCAAGGTTTATGGTGGGAAAGGTGAACAAAAACATAGGCAAATTCAGTTTTGTGGTAATGCTCAGCAGGTGGCATTGGCAAAGCAGCGGGTTGATGAGTACATTTACTCTCAGTTGATACAACAAGCTGGTGCTCAACAGACAGCGTAA

Protein Analysis

350

Amino Acids

37.96

Weight (kDa)

7.63

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 67 - 133 1.7e-11 KH domain
KH_1 PF00013 159 - 228 1.7e-12 KH domain
KH_1 PF00013 270 - 333 2.7e-13 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis pycom02g16160
rosa_chinensis RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
AarI CACCTGC 2 cut(s) 99, 961
AatII GACGTC 1 cut(s) 195
Acc16I TGCGCA 1 cut(s) 615
Acc36I ACCTGC 3 cut(s) 99, 497, 961
AccII CGCG 2 cut(s) 86, 114
AcsI RAATTY 1 cut(s) 945
AcuI CTGAAG 2 cut(s) 184, 777
AcyI GRCGYC 2 cut(s) 192, 306
AfaI GTAC 2 cut(s) 367, 1004
AfiI CCNNNNNNNGG 1 cut(s) 181
AflII CTTAAG 1 cut(s) 413
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 2 cut(s) 773, 876
AjnI CCWGG 1 cut(s) 153
AjuI GAANNNNNNNTTGG 2 cut(s) 822, 854
AluBI AGCT 5 cut(s) 314, 345, 401, 797, 1031
AluI AGCT 5 cut(s) 314, 345, 401, 797, 1031
Alw21I GWGCWC 1 cut(s) 1039
AoxI GGCC 6 cut(s) 143, 177, 183, 285, 564, 758
ApeKI GCWGC 5 cut(s) 252, 388, 391, 467, 988
ApoI RAATTY 1 cut(s) 945
AspLEI GCGC 6 cut(s) 88, 108, 174, 388, 616, 899
AspS9I GGNCC 7 cut(s) 143, 157, 177, 184, 211, 564, 784
AsuC2I CCSGG 2 cut(s) 12, 176
AsuHPI GGTGA 3 cut(s) 368, 659, 938
AvaII GGWCC 3 cut(s) 157, 211, 784
BanII GRGCYC 1 cut(s) 12
BauI CACGAG 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 1039
BbvI GCAGC 5 cut(s) 239, 375, 403, 454, 1000
BccI CCATC 2 cut(s) 299, 347
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciT130I CCWGG 1 cut(s) 155
BclI TGATCA 1 cut(s) 903
BcnI CCSGG 2 cut(s) 12, 176
BfmI CTRYAG 1 cut(s) 389
BfoI RGCGCY 2 cut(s) 109, 175
BfrI CTTAAG 1 cut(s) 413
BfuAI ACCTGC 3 cut(s) 99, 497, 961
BisI GCNGC 9 cut(s) 109, 112, 253, 389, 392, 441, 468, 862, 989
BlpI GCTNAGC 1 cut(s) 966
BlsI GCNGC 9 cut(s) 110, 113, 254, 390, 393, 442, 469, 863, 990
Bme1390I CCNGG 3 cut(s) 12, 155, 176
Bme18I GGWCC 3 cut(s) 157, 211, 784
BmgT120I GGNCC 7 cut(s) 143, 157, 177, 184, 211, 564, 784
BmiI GGNNCC 8 cut(s) 9, 150, 159, 213, 499, 565, 786, 865
BmrFI CCNGG 3 cut(s) 12, 155, 176
BmsI GCATC 4 cut(s) 123, 364, 427, 848
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 695
Bpu1102I GCTNAGC 1 cut(s) 966
BpuEI CTTGAG 1 cut(s) 750
BpuMI CCSGG 2 cut(s) 12, 176
BsaBI GATNNNNATC 2 cut(s) 137, 725
BsaHI GRCGYC 2 cut(s) 192, 306
BsaJI CCNNGG 4 cut(s) 153, 180, 282, 710
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 1 cut(s) 592
Bse3DI GCAATG 1 cut(s) 906
Bse8I GATNNNNATC 2 cut(s) 137, 725
BseBI CCWGG 1 cut(s) 155
BseDI CCNNGG 4 cut(s) 153, 180, 282, 710
BseGI GGATG 3 cut(s) 358, 424, 528
BseJI GATNNNNATC 2 cut(s) 137, 725
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 3 cut(s) 539, 980, 1028
BseNI ACTGG 1 cut(s) 592
BseRI GAGGAG 3 cut(s) 338, 547, 692
BseXI GCAGC 5 cut(s) 239, 375, 403, 454, 1000
BseYI CCCAGC 1 cut(s) 160
Bsh1236I CGCG 2 cut(s) 86, 114
Bsh1285I CGRYCG 1 cut(s) 628
BshFI GGCC 6 cut(s) 145, 179, 185, 287, 566, 760
BsiEI CGRYCG 1 cut(s) 628
BsiHKAI GWGCWC 1 cut(s) 1039
BsiSI CCGG 3 cut(s) 12, 146, 175
BslFI GGGAC 4 cut(s) 197, 471, 638, 717
BslI CCNNNNNNNGG 1 cut(s) 181
BsmFI GGGAC 4 cut(s) 197, 471, 638, 717
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 6 cut(s) 145, 179, 185, 287, 566, 760
Bsp1286I GDGCHC 2 cut(s) 12, 1039
Bsp143I GATC 3 cut(s) 225, 625, 903
Bsp1720I GCTNAGC 1 cut(s) 966
BspANI GGCC 6 cut(s) 145, 179, 185, 287, 566, 760
BspCNI CTCAG 3 cut(s) 540, 979, 1027
BspFNI CGCG 2 cut(s) 86, 114
BspLI GGNNCC 8 cut(s) 9, 150, 159, 213, 499, 565, 786, 865
BspMAI CTGCAG 1 cut(s) 393
BspMI ACCTGC 3 cut(s) 99, 497, 961
BspTI CTTAAG 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 906
BsrI ACTGG 1 cut(s) 592
BssECI CCNNGG 4 cut(s) 153, 180, 282, 710
BssMI GATC 3 cut(s) 225, 625, 903
BssNI GRCGYC 2 cut(s) 192, 306
BssSI CACGAG 1 cut(s) 320
BssT1I CCWWGG 2 cut(s) 180, 282
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 1 cut(s) 155
BstACI GRCGYC 2 cut(s) 192, 306
BstAFI CTTAAG 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 4 cut(s) 548, 695, 966, 1014
BstF5I GGATG 3 cut(s) 358, 424, 528
BstFNI CGCG 2 cut(s) 86, 114
BstH2I RGCGCY 2 cut(s) 109, 175
BstHHI GCGC 6 cut(s) 88, 108, 174, 388, 616, 899
BstKTI GATC 3 cut(s) 228, 628, 906
BstMBI GATC 3 cut(s) 225, 625, 903
BstMCI CGRYCG 1 cut(s) 628
BstMWI GCNNNNNNNGC 4 cut(s) 142, 249, 383, 440
BstNI CCWGG 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 464
BstSCI CCNGG 3 cut(s) 10, 153, 174
BstSFI CTRYAG 1 cut(s) 389
BstUI CGCG 2 cut(s) 86, 114
BstV1I GCAGC 5 cut(s) 239, 375, 403, 454, 1000
BstV2I GAAGAC 1 cut(s) 282
BsuRI GGCC 6 cut(s) 145, 179, 185, 287, 566, 760
BtsCI GGATG 3 cut(s) 358, 424, 528
BveI ACCTGC 3 cut(s) 99, 497, 961
Cac8I GCNNGC 1 cut(s) 403
CfoI GCGC 6 cut(s) 88, 108, 174, 388, 616, 899
Cfr13I GGNCC 7 cut(s) 143, 157, 177, 184, 211, 564, 784
CseI GACGC 1 cut(s) 314
Csp6I GTAC 2 cut(s) 366, 1003
CviAII CATG 4 cut(s) 100, 461, 617, 781
CviQI GTAC 2 cut(s) 366, 1003
DdeI CTNAG 4 cut(s) 548, 695, 966, 1014
DpnI GATC 3 cut(s) 227, 627, 905
DpnII GATC 3 cut(s) 225, 625, 903
EciI GGCGGA 2 cut(s) 20, 117
Eco130I CCWWGG 2 cut(s) 180, 282
Eco24I GRGCYC 1 cut(s) 12
Eco32I GATATC 2 cut(s) 642, 825
Eco47I GGWCC 3 cut(s) 157, 211, 784
Eco57I CTGAAG 2 cut(s) 184, 777
EcoRII CCWGG 1 cut(s) 153
EcoRV GATATC 2 cut(s) 642, 825
EcoT14I CCWWGG 2 cut(s) 180, 282
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 2 cut(s) 180, 282
FaeI CATG 4 cut(s) 103, 464, 620, 784
FaqI GGGAC 4 cut(s) 197, 471, 638, 717
FatI CATG 4 cut(s) 99, 460, 616, 780
FauI CCCGC 6 cut(s) 79, 91, 448, 714, 742, 984
FbaI TGATCA 1 cut(s) 903
Fnu4HI GCNGC 9 cut(s) 109, 112, 253, 389, 392, 441, 468, 862, 989
FokI GGATG 3 cut(s) 365, 431, 535
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 9 cut(s) 109, 112, 253, 389, 392, 441, 468, 862, 989
FspI TGCGCA 1 cut(s) 615
GlaI GCGC 6 cut(s) 87, 107, 173, 387, 615, 898
GluI GCNGC 9 cut(s) 109, 112, 253, 389, 392, 441, 468, 862, 989
GsaI CCCAGC 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 695
HaeII RGCGCY 2 cut(s) 109, 175
HaeIII GGCC 6 cut(s) 145, 179, 185, 287, 566, 760
HapII CCGG 3 cut(s) 12, 146, 175
HgaI GACGC 1 cut(s) 314
HhaI GCGC 6 cut(s) 88, 108, 174, 388, 616, 899
Hin1I GRCGYC 2 cut(s) 192, 306
Hin1II CATG 4 cut(s) 103, 464, 620, 784
Hin6I GCGC 6 cut(s) 86, 106, 172, 386, 614, 897
HinP1I GCGC 6 cut(s) 86, 106, 172, 386, 614, 897
HincII GTYRAC 1 cut(s) 692
HindII GTYRAC 1 cut(s) 692
HinfI GANTC 6 cut(s) 204, 258, 268, 278, 620, 890
HpaII CCGG 3 cut(s) 12, 146, 175
HphI GGTGA 3 cut(s) 368, 659, 938
Hpy166II GTNNAC 2 cut(s) 692, 929
Hpy188I TCNGA 5 cut(s) 203, 534, 625, 666, 829
Hpy188III TCNNGA 5 cut(s) 219, 262, 272, 674, 814
Hpy8I GTNNAC 2 cut(s) 692, 929
Hpy99I CGWCG 3 cut(s) 119, 122, 308
HpyAV CCTTC 3 cut(s) 67, 242, 356
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 2 cut(s) 136, 391
HpyF10VI GCNNNNNNNGC 4 cut(s) 142, 249, 383, 440
HpyF3I CTNAG 4 cut(s) 548, 695, 966, 1014
HpySE526I ACGT 1 cut(s) 192
Hsp92I GRCGYC 2 cut(s) 192, 306
Hsp92II CATG 4 cut(s) 103, 464, 620, 784
HspAI GCGC 6 cut(s) 86, 106, 172, 386, 614, 897
Ksp22I TGATCA 1 cut(s) 903
Kzo9I GATC 3 cut(s) 225, 625, 903
LmnI GCTCC 4 cut(s) 7, 325, 589, 869
Lsp1109I GCAGC 5 cut(s) 239, 375, 403, 454, 1000
LweI GCATC 4 cut(s) 123, 364, 427, 848
MaeII ACGT 1 cut(s) 192
MalI GATC 3 cut(s) 227, 627, 905
MboI GATC 3 cut(s) 225, 625, 903
MboII GAAGA 3 cut(s) 190, 277, 287
MhlI GDGCHC 2 cut(s) 12, 1039
MluCI AATT 5 cut(s) 339, 408, 516, 753, 945
MlyI GAGTC 3 cut(s) 213, 272, 899
MmeI TCCRAC 1 cut(s) 891
MnlI CCTC 8 cut(s) 85, 106, 316, 543, 568, 670, 720, 774
MseI TTAA 3 cut(s) 407, 414, 515
MspA1I CMGCKG 2 cut(s) 797, 991
MspCI CTTAAG 1 cut(s) 413
MspI CCGG 3 cut(s) 12, 146, 175
MspR9I CCNGG 3 cut(s) 12, 155, 176
Mva1269I GAATGC 1 cut(s) 388
MvaI CCWGG 1 cut(s) 155
MvnI CGCG 2 cut(s) 86, 114
MwoI GCNNNNNNNGC 4 cut(s) 142, 249, 383, 440
NciI CCSGG 2 cut(s) 12, 176
NdeII GATC 3 cut(s) 225, 625, 903
NlaIII CATG 4 cut(s) 103, 464, 620, 784
NlaIV GGNNCC 8 cut(s) 9, 150, 159, 213, 499, 565, 786, 865
NmeAIII GCCGAG 2 cut(s) 403, 691
NsbI TGCGCA 1 cut(s) 615
NspI RCATGY 1 cut(s) 464
PaqCI CACCTGC 2 cut(s) 99, 961
PciI ACATGT 1 cut(s) 460
PctI GAATGC 1 cut(s) 388
PfeI GAWTC 3 cut(s) 258, 268, 620
PkrI GCNGC 9 cut(s) 110, 113, 254, 390, 393, 442, 469, 863, 990
Ple19I CGATCG 1 cut(s) 628
PleI GAGTC 3 cut(s) 212, 272, 898
PpsI GAGTC 3 cut(s) 212, 272, 898
PscI ACATGT 1 cut(s) 460
PsiI TTATAA 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 160
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 8 cut(s) 9, 150, 159, 213, 499, 565, 786, 865
PspPI GGNCC 7 cut(s) 143, 157, 177, 184, 211, 564, 784
PstI CTGCAG 1 cut(s) 393
PvuI CGATCG 1 cut(s) 628
PvuII CAGCTG 1 cut(s) 797
RsaI GTAC 2 cut(s) 367, 1004
RsaNI GTAC 2 cut(s) 366, 1003
SaqAI TTAA 3 cut(s) 407, 414, 515
SatI GCNGC 9 cut(s) 109, 112, 253, 389, 392, 441, 468, 862, 989
Sau3AI GATC 3 cut(s) 225, 625, 903
Sau96I GGNCC 7 cut(s) 143, 157, 177, 184, 211, 564, 784
SchI GAGTC 3 cut(s) 213, 272, 899
ScrFI CCNGG 3 cut(s) 12, 155, 176
SduI GDGCHC 2 cut(s) 12, 1039
SfaNI GCATC 4 cut(s) 123, 364, 427, 848
SfcI CTRYAG 1 cut(s) 389
SinI GGWCC 3 cut(s) 157, 211, 784
SmlI CTYRAG 2 cut(s) 413, 765
SmoI CTYRAG 2 cut(s) 413, 765
Sse9I AATT 5 cut(s) 339, 408, 516, 753, 945
SspI AATATT 1 cut(s) 538
StyD4I CCNGG 3 cut(s) 10, 153, 174
StyI CCWWGG 2 cut(s) 180, 282
TaiI ACGT 1 cut(s) 195
TaqI TCGA 3 cut(s) 316, 628, 813
TasI AATT 5 cut(s) 339, 408, 516, 753, 945
TatI WGTACW 1 cut(s) 1002
TauI GCSGC 4 cut(s) 111, 114, 443, 864
TfiI GAWTC 3 cut(s) 258, 268, 620
Tru1I TTAA 3 cut(s) 407, 414, 515
Tru9I TTAA 3 cut(s) 407, 414, 515
TseI GCWGC 5 cut(s) 252, 388, 391, 467, 988
TspDTI ATGAA 4 cut(s) 49, 116, 375, 633
Vha464I CTTAAG 1 cut(s) 413
VpaK11BI GGWCC 3 cut(s) 157, 211, 784
XapI RAATTY 1 cut(s) 945
XceI RCATGY 1 cut(s) 464
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.