Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000462

Physical Location & Seq

Genomic Coordinates Reverse (-)

26512733 .. 26513466

Gene Structure 734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1123700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCCAATACCTCCTCCTGAACTTCCCCTACCAATGAATGAAACAAACAAAGAGAACGAAGATAGCCCTATGGCTTTTGATGCTTCAGTTGCTCAGTATCAGTCCAGCATACCCTCCAAGTTCATATGGCCCGACCACGAGAAGCCCTGCTCCGAATCACCAGAGCTTCCAGTTCCCCTTGTCGACCTGAAAGGCTTTCTCTCAGGGGATGCCTGGGAGGTGTCTAACGCAACTCGTTCAGTCGGTGAGGCATGCAAGAAGCACAGATTTTTCCTCATTGTAAATCACGGAGTTGATTCGCAGCTTGTAGGGAAAGCTCATGAGCTCAAAGAAAGGCTGTTTAATCAGGAATACTGTGATGCCATGAACAACCTCTCCAATGGAATAACGGAGCTACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010228 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045544 GO:0046394 GO:0048366 GO:0048367 GO:0048572 GO:0048573 GO:0048575 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:0099402 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

134

Amino Acids

14.85

Weight (kDa)

4.79

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	58 - 117	1.6e-09	non-haem dioxygenase in morphine synthesis N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000462)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca	FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica	MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica	Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis	pycom02g16160
rosa_chinensis	RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata	RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora	Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii	Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa	Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha	Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana	Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	69
AjnI	CCWGG	1 cut(s)	212
AloI	GAACNNNNNNTCC	2 cut(s)	359, 391
AluBI	AGCT	5 cut(s)	166, 304, 317, 325, 394
AluI	AGCT	5 cut(s)	166, 304, 317, 325, 394
Alw21I	GWGCWC	1 cut(s)	327
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	150, 257
BanII	GRGCYC	1 cut(s)	327
BauI	CACGAG	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	214
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
Bme1390I	CCNGG	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	3 cut(s)	70, 199, 349
BsaJI	CCNNGG	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bse1I	ACTGG	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	214
BseMII	CTCAG	2 cut(s)	107, 216
BseNI	ACTGG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	313
BshFI	GGCC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	327
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	327
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	2 cut(s)	106, 215
BspHI	TCATGA	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	213
BssSI	CACGAG	1 cut(s)	137
Bst2BI	CACGAG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	2 cut(s)	93, 202
BstF5I	GGATG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 89
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	253
CciI	TCATGA	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	129
CviAII	CATG	3 cut(s)	252, 320, 364
DdeI	CTNAG	2 cut(s)	93, 202
Ecl136II	GAGCTC	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	327
Eco53kI	GAGCTC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	69
EcoICRI	GAGCTC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	3 cut(s)	255, 323, 367
FaiI	YATR	7 cut(s)	71, 110, 125, 127, 253, 321, 365
FatI	CATG	3 cut(s)	251, 319, 363
FauNDI	CATATG	1 cut(s)	125
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	302
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	302
GluI	GCNGC	1 cut(s)	302
HaeIII	GGCC	1 cut(s)	130
Hin1II	CATG	3 cut(s)	255, 323, 367
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	155, 296
HphI	GGTGA	2 cut(s)	150, 257
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	154, 401
Hpy188III	TCNNGA	3 cut(s)	17, 320, 347
Hpy8I	GTNNAC	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4V	TGCA	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 89
HpyF3I	CTNAG	2 cut(s)	93, 202
Hsp92II	CATG	3 cut(s)	255, 323, 367
LmnI	GCTCC	2 cut(s)	155, 391
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	3 cut(s)	70, 199, 349
MboII	GAAGA	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	327
MnlI	CCTC	7 cut(s)	21, 24, 124, 211, 241, 284, 383
MseI	TTAA	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	80, 89
NdeI	CATATG	1 cut(s)	125
NlaIII	CATG	3 cut(s)	255, 323, 367
NspI	RCATGY	1 cut(s)	255
PaeI	GCATGC	1 cut(s)	255
PagI	TCATGA	1 cut(s)	319
PfeI	GAWTC	2 cut(s)	155, 296
PkrI	GCNGC	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	129
PsrI	GAACNNNNNNTAC	2 cut(s)	12, 44
SacI	GAGCTC	1 cut(s)	327
SalI	GTCGAC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	302
Sau96I	GGNCC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	9 cut(s)	13, 168, 189, 222, 306, 319, 327, 375, 396
SfaNI	GCATC	3 cut(s)	70, 199, 349
SphI	GCATGC	1 cut(s)	255
SstI	GAGCTC	1 cut(s)	327
StyD4I	CCNGG	1 cut(s)	212
TaaI	ACNGT	1 cut(s)	356
TaqI	TCGA	1 cut(s)	183
TfiI	GAWTC	2 cut(s)	155, 296
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseI	GCWGC	1 cut(s)	301
TspDTI	ATGAA	4 cut(s)	50, 54, 112, 380
TspGWI	ACGGA	1 cut(s)	303
XceI	RCATGY	1 cut(s)	255
XmiI	GTMKAC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.