Rmu_ssc0000116.1_g000048

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000116.1
Physical Location & Seq
Reverse (-)
232665 .. 233979
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000116.1_g000048.1.cds

Sequence Viewer

Length: 1107 bp
atgaaaaccctaaatcaccacaaagaagatgaccaaaagccactagtcttcgacgcttcgttgctccggtaccaaactgacatacccaagcagttcatttggcccgacgacgaaaagccatgtcctaacgcaccagaattacaagtcccactcatagacttgggcgacttcctctccggcgaccccgaggccgcaatgaaagcttcgaggctcgttggagaagcctgcgaaaagcatggcttctttctcgtcgtgaatcacggcgttaaggacagtctcatagctgatgcacaccaatacatggacgacttctttggtttgcccctctctgaaaaacagagggctcagaggaaagccggcgagcactgcggctacgccagtagcttcaccggaaggttctcgtcaaaactcccctggaaagaaactctgtcgtttcgctacaccgcggaccaaagcgagtccaatgttgttaaaaattacctctgcaatgctatgggagaagacttcgaagaattcgggagggtgtaccaagactatagtgaggccatgagcacactttccatagggattatggagcttttgggaatgagtctcggcgtggacagaacacatttcaaggaatttttcggagacaatgattcgataatgaggttgaattactatccaccgtgccagaaaccagaccagactttaggcaccggacctcattgtgatccgacctctttaaccattcttcaccaagaccaagtgggggggcttcaagtctttgtggacgaagaatggcgctcgatcagcccgaatttgaacgcctttgttgttaacattggtgacaccttcatggctctttcaaacgggaggtacaaaagttgcttgcacagagcagtagtgaacagcaaaactccgaggaaatcactagcgtttttcttatgtccgagagatgataaggtggtgaagccaccgagcgggttggtggatacttcgtacccgagaatatacccggatttcacatggccgatgttgttggagttcacacagaagcattacagagctgacatgatgaccctgcaagctttcacaaactggcttcaagaacagaggagcagctga

Protein Analysis

368

Amino Acids

41.89

Weight (kDa)

5.49

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis pycom02g16160
rosa_chinensis RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 69
AccB1I GGYRCC 2 cut(s) 69, 695
AccB7I CCANNNNNTGG 1 cut(s) 301
AccBSI CCGCTC 1 cut(s) 963
AccII CGCG 1 cut(s) 446
AciI CCGC 5 cut(s) 192, 369, 444, 446, 963
AclWI GGATC 1 cut(s) 707
AcoI YGGCCR 1 cut(s) 1010
AcsI RAATTY 3 cut(s) 512, 620, 799
AfaI GTAC 4 cut(s) 71, 527, 860, 983
AfiI CCNNNNNNNGG 3 cut(s) 301, 751, 962
AgsI TTSAA 6 cut(s) 616, 655, 761, 805, 849, 1088
AhlI ACTAGT 1 cut(s) 43
AjnI CCWGG 1 cut(s) 413
AluBI AGCT 7 cut(s) 203, 284, 384, 577, 1049, 1070, 1104
AluI AGCT 7 cut(s) 203, 284, 384, 577, 1049, 1070, 1104
Alw21I GWGCWC 2 cut(s) 366, 554
Alw26I GTCTC 3 cut(s) 281, 596, 624
AlwI GGATC 1 cut(s) 707
Ama87I CYCGRG 2 cut(s) 185, 985
AoxI GGCC 4 cut(s) 101, 189, 543, 1010
ApeKI GCWGC 1 cut(s) 1101
ApoI RAATTY 3 cut(s) 512, 620, 799
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
Asp718I GGTACC 1 cut(s) 69
AspLEI GCGC 1 cut(s) 786
AspS9I GGNCC 3 cut(s) 102, 448, 701
AsuC2I CCSGG 1 cut(s) 998
AsuHPI GGTGA 5 cut(s) 8, 379, 728, 839, 961
AsuII TTCGAA 1 cut(s) 507
AvaI CYCGRG 2 cut(s) 185, 985
AvaII GGWCC 2 cut(s) 448, 701
BaeI ACNNNNGTAYC 2 cut(s) 850, 883
BanI GGYRCC 2 cut(s) 69, 695
BanII GRGCYC 1 cut(s) 346
BbsI GAAGAC 2 cut(s) 40, 507
Bbv12I GWGCWC 2 cut(s) 366, 554
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 415
BciVI GTATCC 1 cut(s) 967
BcnI CCSGG 1 cut(s) 998
BcoDI GTCTC 3 cut(s) 281, 596, 624
BcuI ACTAGT 1 cut(s) 43
BfaI CTAG 2 cut(s) 44, 914
BfmI CTRYAG 1 cut(s) 535
BfoI RGCGCY 1 cut(s) 787
BfuI GTATCC 1 cut(s) 967
BisI GCNGC 3 cut(s) 192, 370, 1102
BlsI GCNGC 3 cut(s) 193, 371, 1103
Bme1390I CCNGG 2 cut(s) 415, 998
Bme18I GGWCC 2 cut(s) 448, 701
BmeT110I CYCGRG 2 cut(s) 185, 985
BmgT120I GGNCC 3 cut(s) 102, 448, 701
BmiI GGNNCC 2 cut(s) 71, 697
BmrFI CCNGG 2 cut(s) 415, 998
BmsI GCATC 1 cut(s) 277
BpiI GAAGAC 2 cut(s) 40, 507
Bpu14I TTCGAA 1 cut(s) 507
BpuMI CCSGG 1 cut(s) 998
BsaJI CCNNGG 4 cut(s) 186, 413, 444, 902
BsaWI WCCGGW 3 cut(s) 66, 389, 698
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 751, 962
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 2 cut(s) 378, 1085
Bse3DI GCAATG 2 cut(s) 201, 493
BseBI CCWGG 1 cut(s) 415
BseDI CCNNGG 4 cut(s) 186, 413, 444, 902
BseLI CCNNNNNNNGG 3 cut(s) 301, 751, 962
BseMI GCAATG 2 cut(s) 201, 493
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 2 cut(s) 378, 1085
Bsh1236I CGCG 1 cut(s) 446
BshFI GGCC 4 cut(s) 103, 191, 545, 1012
BshNI GGYRCC 2 cut(s) 69, 695
BsiHKAI GWGCWC 2 cut(s) 366, 554
BsiHKCI CYCGRG 2 cut(s) 185, 985
BsiSI CCGG 6 cut(s) 67, 177, 357, 390, 699, 998
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 3 cut(s) 301, 751, 962
BsmAI GTCTC 3 cut(s) 281, 596, 624
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 4 cut(s) 103, 191, 545, 1012
BsoBI CYCGRG 2 cut(s) 185, 985
Bsp119I TTCGAA 1 cut(s) 507
Bsp1286I GDGCHC 3 cut(s) 346, 366, 554
Bsp143I GATC 2 cut(s) 712, 789
BspACI CCGC 5 cut(s) 192, 369, 444, 446, 963
BspANI GGCC 4 cut(s) 103, 191, 545, 1012
BspCNI CTCAG 1 cut(s) 358
BspFNI CGCG 1 cut(s) 446
BspLI GGNNCC 2 cut(s) 71, 697
BspPI GGATC 1 cut(s) 707
BspT104I TTCGAA 1 cut(s) 507
BspT107I GGYRCC 2 cut(s) 69, 695
BsrBI CCGCTC 1 cut(s) 963
BsrDI GCAATG 2 cut(s) 201, 493
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 2 cut(s) 378, 1085
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 4 cut(s) 186, 413, 444, 902
BssMI GATC 2 cut(s) 712, 789
Bst2UI CCWGG 1 cut(s) 415
Bst4CI ACNGT 2 cut(s) 275, 669
BstBI TTCGAA 1 cut(s) 507
BstC8I GCNNGC 5 cut(s) 226, 358, 362, 872, 1068
BstDEI CTNAG 1 cut(s) 345
BstDSI CCRYGG 1 cut(s) 444
BstFNI CGCG 1 cut(s) 446
BstH2I RGCGCY 1 cut(s) 787
BstHHI GCGC 1 cut(s) 786
BstKTI GATC 2 cut(s) 715, 792
BstMAI GTCTC 3 cut(s) 281, 596, 624
BstMBI GATC 2 cut(s) 712, 789
BstMWI GCNNNNNNNGC 3 cut(s) 200, 366, 792
BstNI CCWGG 1 cut(s) 415
BstSCI CCNGG 2 cut(s) 413, 996
BstSFI CTRYAG 1 cut(s) 535
BstUI CGCG 1 cut(s) 446
BstV2I GAAGAC 2 cut(s) 40, 507
BsuI GTATCC 1 cut(s) 967
BsuRI GGCC 4 cut(s) 103, 191, 545, 1012
BtgI CCRYGG 1 cut(s) 444
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 364
Cac8I GCNNGC 5 cut(s) 226, 358, 362, 872, 1068
CfoI GCGC 1 cut(s) 786
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 3 cut(s) 102, 448, 701
Cfr42I CCGCGG 1 cut(s) 447
CseI GACGC 1 cut(s) 62
Csp6I GTAC 4 cut(s) 70, 526, 859, 982
CviAII CATG 7 cut(s) 120, 236, 301, 547, 838, 1008, 1054
CviQI GTAC 4 cut(s) 70, 526, 859, 982
DdeI CTNAG 1 cut(s) 345
DpnI GATC 2 cut(s) 714, 791
DpnII GATC 2 cut(s) 712, 789
EaeI YGGCCR 1 cut(s) 1010
Eco24I GRGCYC 1 cut(s) 346
Eco47I GGWCC 2 cut(s) 448, 701
Eco88I CYCGRG 2 cut(s) 185, 985
EcoRI GAATTC 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 413
EcoT38I GRGCYC 1 cut(s) 346
FaeI CATG 7 cut(s) 123, 239, 304, 550, 841, 1011, 1057
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FaqI GGGAC 1 cut(s) 131
FatI CATG 7 cut(s) 119, 235, 300, 546, 837, 1007, 1053
FauI CCCGC 1 cut(s) 956
Fnu4HI GCNGC 3 cut(s) 192, 370, 1102
FriOI GRGCYC 1 cut(s) 346
Fsp4HI GCNGC 3 cut(s) 192, 370, 1102
FspBI CTAG 2 cut(s) 44, 914
GlaI GCGC 1 cut(s) 785
GluI GCNGC 3 cut(s) 192, 370, 1102
HaeII RGCGCY 1 cut(s) 787
HaeIII GGCC 4 cut(s) 103, 191, 545, 1012
HapII CCGG 6 cut(s) 67, 177, 357, 390, 699, 998
HgaI GACGC 1 cut(s) 62
HhaI GCGC 1 cut(s) 786
Hin1II CATG 7 cut(s) 123, 239, 304, 550, 841, 1011, 1057
Hin6I GCGC 1 cut(s) 784
HinP1I GCGC 1 cut(s) 784
HincII GTYRAC 1 cut(s) 820
HindII GTYRAC 1 cut(s) 820
HindIII AAGCTT 2 cut(s) 201, 1068
HinfI GANTC 4 cut(s) 256, 458, 589, 638
HpaI GTTAAC 1 cut(s) 820
HpaII CCGG 6 cut(s) 67, 177, 357, 390, 699, 998
HphI GGTGA 5 cut(s) 8, 379, 728, 839, 961
Hpy166II GTNNAC 6 cut(s) 526, 601, 772, 820, 889, 1029
Hpy188I TCNGA 6 cut(s) 331, 348, 629, 717, 903, 933
Hpy188III TCNNGA 3 cut(s) 253, 517, 1088
Hpy8I GTNNAC 6 cut(s) 526, 601, 772, 820, 889, 1029
Hpy99I CGWCG 4 cut(s) 56, 110, 113, 254
HpyAV CCTTC 2 cut(s) 387, 844
HpyCH4III ACNGT 2 cut(s) 275, 669
HpyCH4V TGCA 4 cut(s) 290, 486, 874, 1066
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 366, 792
HpyF3I CTNAG 1 cut(s) 345
Hsp92II CATG 7 cut(s) 123, 239, 304, 550, 841, 1011, 1057
HspAI GCGC 1 cut(s) 784
KpnI GGTACC 1 cut(s) 73
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
KspAI GTTAAC 1 cut(s) 820
KspI CCGCGG 1 cut(s) 447
Kzo9I GATC 2 cut(s) 712, 789
LmnI GCTCC 3 cut(s) 69, 574, 1098
LweI GCATC 1 cut(s) 277
MaeI CTAG 2 cut(s) 44, 914
MaeIII GTNAC 1 cut(s) 827
MalI GATC 2 cut(s) 714, 791
MbiI CCGCTC 1 cut(s) 963
MboI GATC 2 cut(s) 712, 789
MboII GAAGA 6 cut(s) 38, 40, 512, 521, 725, 788
MhlI GDGCHC 3 cut(s) 346, 366, 554
MluCI AATT 6 cut(s) 137, 475, 512, 620, 655, 799
MlyI GAGTC 2 cut(s) 467, 598
MmeI TCCRAC 3 cut(s) 196, 740, 1002
MroNI GCCGGC 1 cut(s) 356
MseI TTAA 4 cut(s) 267, 471, 725, 819
MslI CAYNNNNRTG 1 cut(s) 836
MspA1I CMGCKG 2 cut(s) 446, 1104
MspI CCGG 6 cut(s) 67, 177, 357, 390, 699, 998
MspR9I CCNGG 2 cut(s) 415, 998
MvaI CCWGG 1 cut(s) 415
MvnI CGCG 1 cut(s) 446
MwoI GCNNNNNNNGC 3 cut(s) 200, 366, 792
NaeI GCCGGC 1 cut(s) 358
NciI CCSGG 1 cut(s) 998
NdeII GATC 2 cut(s) 712, 789
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 7 cut(s) 123, 239, 304, 550, 841, 1011, 1057
NlaIV GGNNCC 2 cut(s) 71, 697
NmeAIII GCCGAG 1 cut(s) 573
NmuCI GTSAC 1 cut(s) 827
NspV TTCGAA 1 cut(s) 507
PcsI WCGNNNNNNNCGW 1 cut(s) 794
PdiI GCCGGC 1 cut(s) 358
PfeI GAWTC 2 cut(s) 256, 638
PflMI CCANNNNNTGG 1 cut(s) 301
PkrI GCNGC 3 cut(s) 193, 371, 1103
PleI GAGTC 2 cut(s) 466, 597
PpsI GAGTC 2 cut(s) 466, 597
Psp6I CCWGG 1 cut(s) 413
PspGI CCWGG 1 cut(s) 413
PspN4I GGNNCC 2 cut(s) 71, 697
PspPI GGNCC 3 cut(s) 102, 448, 701
PvuII CAGCTG 1 cut(s) 1104
RsaI GTAC 4 cut(s) 71, 527, 860, 983
RsaNI GTAC 4 cut(s) 70, 526, 859, 982
RseI CAYNNNNRTG 1 cut(s) 836
SacII CCGCGG 1 cut(s) 447
SaqAI TTAA 4 cut(s) 267, 471, 725, 819
SatI GCNGC 3 cut(s) 192, 370, 1102
Sau3AI GATC 2 cut(s) 712, 789
Sau96I GGNCC 3 cut(s) 102, 448, 701
SchI GAGTC 2 cut(s) 467, 598
ScrFI CCNGG 2 cut(s) 415, 998
SduI GDGCHC 3 cut(s) 346, 366, 554
SfaNI GCATC 1 cut(s) 277
SfcI CTRYAG 1 cut(s) 535
Sfr303I CCGCGG 1 cut(s) 447
SfuI TTCGAA 1 cut(s) 507
SgrBI CCGCGG 1 cut(s) 447
SinI GGWCC 2 cut(s) 448, 701
SmiMI CAYNNNNRTG 1 cut(s) 836
SpeI ACTAGT 1 cut(s) 43
Sse9I AATT 6 cut(s) 137, 475, 512, 620, 655, 799
SsiI CCGC 5 cut(s) 192, 369, 444, 446, 963
SspMI CTAG 2 cut(s) 44, 914
StyD4I CCNGG 2 cut(s) 413, 996
TaaI ACNGT 2 cut(s) 275, 669
TaqI TCGA 5 cut(s) 51, 206, 507, 641, 788
TasI AATT 6 cut(s) 137, 475, 512, 620, 655, 799
TauI GCSGC 2 cut(s) 194, 372
TfiI GAWTC 2 cut(s) 256, 638
Tru1I TTAA 4 cut(s) 267, 471, 725, 819
Tru9I TTAA 4 cut(s) 267, 471, 725, 819
TscAI CASTG 1 cut(s) 371
TseFI GTSAC 1 cut(s) 827
TseI GCWGC 1 cut(s) 1101
Tsp45I GTSAC 1 cut(s) 827
TspDTI ATGAA 4 cut(s) 17, 85, 212, 826
TspRI CASTG 1 cut(s) 371
Van91I CCANNNNNTGG 1 cut(s) 301
VpaK11BI GGWCC 2 cut(s) 448, 701
XapI RAATTY 3 cut(s) 512, 620, 799
XcmI CCANNNNNNNNNTGG 1 cut(s) 568
XspI CTAG 2 cut(s) 44, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.