RchiOBHm_Chr1g0351591

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
44844033 .. 44848611
4579 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57735

Sequence Viewer

Length: 1137 bp
ATGTTAGCCATGCCAATGCCCCCTAACCATCCTTCATCACTAAACCAAACAAAGCATGAGAATGAACGAACTCCTTTGGTTTTCGATGCTCCAGTTCTTCAATACGAGTCCAACATACCACCCCAATTCATATGGCCAGACGACGATAAGCCATGCCCCGAGCGACCAGAGCTTCATGTTCCTCCCATTGACCTGAAAGGCTTTCTCAGCGGGGATGCTTTGATCGTCTCAGAAGCAATTCGTTCAGTCGATGAGGCATGCAAGAAACATGGATTCTTTCTTATTGTCAACCATGGAGTTGATTCGCAACTCATAGCAAAAGCTCATGAATACATGGACGCGTTCTTCAGCATGAAACTCGCAGAGAAGCAAAGGGCTCAGAGAAAGGTTGGTGACAGCTGCGGATATGCTAGTAGCTTCACTGGCAGGTTCTCCTCCAAACTTCCTTGGAAAGAAACACTTTCTTTCAGATACTGCACTGATCGCCAGTGCTCAACAGTTGTCGAGGACTATTTTGTGAATGTGATGGGTGAAGATTTCACAGAATTCGGGAAGGTTTACCAAGAATATGGTGAAGCCATGAACAATCTCAGTAATGGGATAATGGAGCTACTAGGACTGAGCCTAGGAGTTGGCCAAGAGTATTTCAAAGAATTCTTCGAAGGAAACGATTCCATAATGAGGTTGAACTACTATCCAATATGCCAAAAACCAGATTTAACCCTAGGAACTGGTCCTCACTGTGATCCCACATCCTTAACGATCCTGCATCAGGACCAAGTAGGTGGCCTTGAAGTGTTTGTAGATGAAAAGTGGCACGCCATTACTCCTATCCTTGATTCCTTCGTTATCAACGTTGGTGACACATTTATGGCTCTATCAAATGGGATTTACAAGAGCTGCTTGCACAGAGCAGTTGTAAACAACAAAATCGTAAGGAAATCACTTGCTTTCTTTCTTTGCCCAAACAAAGACAAAGTGGTGACCCCACCAACAAGTTTGGTCGACACTGAAACACCAAGGTTGTATCCTGACTTCACTTGGCCTAGTCTGCTAGAGTTTACACAGAAGCACTACAGGGCCGACACAAGAACCTTGGATGCTTTCTCCGACTGGATTTCACGGAAAAGCAACTAA

Protein Analysis

378

Amino Acids

42.89

Weight (kDa)

5.41

Isoelectric Point (pI)

29.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 60 - 160 2e-22 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 224 - 322 7.8e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000462)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25420 AT4G25420 AT5G51810 AT5G51810
fragaria_vesca FvH4_7g12600 FvH4_7g12610 FvH4_7g12610 FvH4_7g28670
malus_domestica MD00G1003600.v1.1 MD00G1123700.v1.1 MD01G1192100.v1.1 MD02G1198000.v1.1
prunus_persica Prupe.2G150700_v2.0.a1 Prupe.2G286800_v2.0.a1
pyrus_communis pycom02g16160
rosa_chinensis RchiOBHm_Chr1g0351591 RchiOBHm_Chr1g0351601 RchiOBHm_Chr1g0351611 RchiOBHm_Chr1g0351621 RchiOBHm_Chr1g0351631 RchiOBHm_Chr1g0353771 RchiOBHm_Chr1g0353791 RchiOBHm_Chr1g0376161
rosa_laevigata RLG00000026625 RLG00000028255 RLG00000028258 RLG00000028394 RLG00000028395 RLG00000028396 RLG00000028397 RLG00000028399
rosa_multiflora Rmu_sc0001144.1_g000008 Rmu_sc0001144.1_g000010 Rmu_sc0001144.1_g000018 Rmu_sc0001144.1_g000029 Rmu_sc0002300.1_g000001 Rmu_sc0002300.1_g000013 Rmu_sc0005947.1_g000014 Rmu_sc0020670.1_g000001 Rmu_ssc0000116.1_g000048
rosa_roxburghii Rroxscaffold_4G00282340 Rroxscaffold_4G00301610 Rroxscaffold_4G00301650 Rroxscaffold_4G00303660 Rroxscaffold_4G00303670 Rroxscaffold_4G00303690 Rroxscaffold_4G00303710
rosa_rugosa Rorug01G0218900 Rorug01G0219000.1 Rorug01G0219100 Rorug01G0219300 Rorug01G0219400 Rorug01G0219500 Rorug01G0238200 Rorug01G0238400 Rorug01G0394200
rosa_samantha Rh1AG233600 Rh1AG234000 Rh1AG234100 Rh1AG234200 Rh1AG250000 Rh1AG250100 Rh1AG405700 Rh1BG204300 Rh1BG204500 Rh1BG204700 Rh1BG204800 Rh1BG220300 Rh1BG220600 Rh1BG369400 Rh1CG218200 Rh1CG218600 Rh1CG218700 Rh1CG218800 Rh1CG232600 Rh1CG382100 Rh1DG231200 Rh1DG231500 Rh1DG231700 Rh1DG231800 Rh1DG247200 Rh1DG247500 Rh1DG399000
rosa_wichuraiana Rw0G011370 Rw1G020360 Rw1G020370 Rw1G020380 Rw1G020390 Rw1G021810 Rw1G021830 Rw1G035990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 417
AccI GTMKAC 1 cut(s) 1005
AccII CGCG 1 cut(s) 341
AciI CCGC 2 cut(s) 210, 402
AclI AACGTT 1 cut(s) 855
AclWI GGATC 2 cut(s) 740, 757
AcoI YGGCCR 2 cut(s) 134, 634
AcsI RAATTY 2 cut(s) 545, 653
AcuI CTGAAG 1 cut(s) 331
AfiI CCNNNNNNNGG 2 cut(s) 681, 772
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 4 cut(s) 101, 649, 688, 794
AluBI AGCT 6 cut(s) 172, 323, 399, 417, 610, 900
AluI AGCT 6 cut(s) 172, 323, 399, 417, 610, 900
Alw21I GWGCWC 1 cut(s) 494
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 2 cut(s) 740, 757
AlwNI CAGNNNCTG 1 cut(s) 474
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 5 cut(s) 134, 634, 787, 1043, 1080
ApeKI GCWGC 2 cut(s) 399, 900
ApoI RAATTY 2 cut(s) 545, 653
Asp700I GAANNNNTTC 2 cut(s) 237, 670
AspA2I CCTAGG 2 cut(s) 625, 724
AspS9I GGNCC 3 cut(s) 734, 775, 1080
AsuHPI GGTGA 5 cut(s) 404, 542, 584, 872, 994
AsuII TTCGAA 1 cut(s) 660
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 2 cut(s) 734, 775
AvrII CCTAGG 2 cut(s) 625, 724
BalI TGGCCA 2 cut(s) 136, 636
BanII GRGCYC 1 cut(s) 379
BarI GAAGNNNNNNTAC 2 cut(s) 1019, 1051
Bbv12I GWGCWC 1 cut(s) 494
BbvI GCAGC 2 cut(s) 386, 887
BccI CCATC 2 cut(s) 36, 520
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BciVI GTATCC 1 cut(s) 1038
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 6 cut(s) 411, 614, 626, 725, 1047, 1055
BfmI CTRYAG 1 cut(s) 1075
BfuAI ACCTGC 1 cut(s) 417
BfuI GTATCC 1 cut(s) 1038
BisI GCNGC 2 cut(s) 400, 901
BlnI CCTAGG 2 cut(s) 625, 724
BlsI GCNGC 2 cut(s) 401, 902
Bme18I GGWCC 2 cut(s) 734, 775
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 3 cut(s) 734, 775, 1080
BmsI GCATC 4 cut(s) 76, 205, 778, 1090
BpmI CTGGAG 1 cut(s) 75
Bpu14I TTCGAA 1 cut(s) 660
BsaJI CCNNGG 6 cut(s) 292, 446, 625, 724, 1019, 1095
Bsc4I CCNNNNNNNGG 2 cut(s) 681, 772
Bse1I ACTGG 5 cut(s) 92, 427, 487, 736, 1118
BseDI CCNNGG 6 cut(s) 292, 446, 625, 724, 1019, 1095
BseGI GGATG 4 cut(s) 28, 220, 752, 1105
BseLI CCNNNNNNNGG 2 cut(s) 681, 772
BseMII CTCAG 5 cut(s) 220, 243, 392, 604, 611
BseNI ACTGG 5 cut(s) 92, 427, 487, 736, 1118
BseRI GAGGAG 1 cut(s) 424
BseXI GCAGC 2 cut(s) 386, 887
BsgI GTGCAG 1 cut(s) 460
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 5 cut(s) 136, 636, 789, 1045, 1082
BsiHKAI GWGCWC 1 cut(s) 494
BsiHKCI CYCGRG 1 cut(s) 158
BslI CCNNNNNNNGG 2 cut(s) 681, 772
BsmAI GTCTC 1 cut(s) 232
BsmBI CGTCTC 1 cut(s) 232
BsnI GGCC 5 cut(s) 136, 636, 789, 1045, 1082
BsoBI CYCGRG 1 cut(s) 158
Bsp119I TTCGAA 1 cut(s) 660
Bsp1286I GDGCHC 2 cut(s) 379, 494
Bsp143I GATC 4 cut(s) 222, 481, 745, 762
Bsp19I CCATGG 1 cut(s) 292
BspACI CCGC 2 cut(s) 210, 402
BspANI GGCC 5 cut(s) 136, 636, 789, 1045, 1082
BspCNI CTCAG 5 cut(s) 219, 242, 391, 603, 612
BspFNI CGCG 1 cut(s) 341
BspHI TCATGA 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 417
BspPI GGATC 2 cut(s) 740, 757
BspT104I TTCGAA 1 cut(s) 660
BsrI ACTGG 5 cut(s) 92, 427, 487, 736, 1118
BssECI CCNNGG 6 cut(s) 292, 446, 625, 724, 1019, 1095
BssMI GATC 4 cut(s) 222, 481, 745, 762
BssT1I CCWWGG 6 cut(s) 292, 446, 625, 724, 1019, 1095
Bst4CI ACNGT 2 cut(s) 499, 743
BstBI TTCGAA 1 cut(s) 660
BstC8I GCNNGC 3 cut(s) 259, 819, 905
BstDEI CTNAG 5 cut(s) 206, 229, 378, 590, 620
BstDSI CCRYGG 1 cut(s) 292
BstEII GGTNACC 1 cut(s) 982
BstENI CCTNNNNNAGG 1 cut(s) 770
BstF5I GGATG 4 cut(s) 28, 220, 752, 1105
BstFNI CGCG 1 cut(s) 341
BstKTI GATC 4 cut(s) 225, 484, 748, 765
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 4 cut(s) 222, 481, 745, 762
BstMWI GCNNNNNNNGC 5 cut(s) 169, 207, 423, 483, 1051
BstNSI RCATGY 1 cut(s) 261
BstPI GGTNACC 1 cut(s) 982
BstSFI CTRYAG 1 cut(s) 1075
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 2 cut(s) 386, 887
BstXI CCANNNNNNTGG 2 cut(s) 569, 785
BsuI GTATCC 1 cut(s) 1038
BsuRI GGCC 5 cut(s) 136, 636, 789, 1045, 1082
BtgI CCRYGG 1 cut(s) 292
BtsCI GGATG 4 cut(s) 28, 220, 752, 1105
BtsIMutI CAGTG 5 cut(s) 420, 477, 494, 739, 1008
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 3 cut(s) 259, 819, 905
CaiI CAGNNNCTG 1 cut(s) 474
CciI TCATGA 1 cut(s) 325
Cfr13I GGNCC 3 cut(s) 734, 775, 1080
CseI GACGC 1 cut(s) 347
DdeI CTNAG 5 cut(s) 206, 229, 378, 590, 620
DpnI GATC 4 cut(s) 224, 483, 747, 764
DpnII GATC 4 cut(s) 222, 481, 745, 762
EaeI YGGCCR 2 cut(s) 134, 634
Eco130I CCWWGG 6 cut(s) 292, 446, 625, 724, 1019, 1095
Eco24I GRGCYC 1 cut(s) 379
Eco47I GGWCC 2 cut(s) 734, 775
Eco57I CTGAAG 1 cut(s) 331
Eco88I CYCGRG 1 cut(s) 158
Eco91I GGTNACC 1 cut(s) 982
EcoNI CCTNNNNNAGG 1 cut(s) 770
EcoO65I GGTNACC 1 cut(s) 982
EcoRI GAATTC 2 cut(s) 545, 653
EcoT14I CCWWGG 6 cut(s) 292, 446, 625, 724, 1019, 1095
EcoT38I GRGCYC 1 cut(s) 379
ErhI CCWWGG 6 cut(s) 292, 446, 625, 724, 1019, 1095
Esp3I CGTCTC 1 cut(s) 232
FalI AAGNNNNNCTT 4 cut(s) 444, 476, 887, 919
FauI CCCGC 1 cut(s) 203
FauNDI CATATG 1 cut(s) 131
FblI GTMKAC 1 cut(s) 1005
Fnu4HI GCNGC 2 cut(s) 400, 901
FokI GGATG 4 cut(s) 15, 227, 739, 1112
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 2 cut(s) 400, 901
FspBI CTAG 6 cut(s) 411, 614, 626, 725, 1047, 1055
GluI GCNGC 2 cut(s) 400, 901
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 5 cut(s) 136, 636, 789, 1045, 1082
HgaI GACGC 1 cut(s) 347
HincII GTYRAC 2 cut(s) 289, 1006
HindII GTYRAC 2 cut(s) 289, 1006
HinfI GANTC 5 cut(s) 107, 273, 302, 671, 839
HphI GGTGA 5 cut(s) 404, 542, 584, 872, 994
Hpy166II GTNNAC 5 cut(s) 289, 559, 922, 1006, 1062
Hpy188I TCNGA 4 cut(s) 232, 381, 470, 1111
Hpy188III TCNNGA 4 cut(s) 326, 550, 773, 1031
Hpy8I GTNNAC 5 cut(s) 289, 559, 922, 1006, 1062
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 4 cut(s) 42, 547, 656, 853
HpyCH4III ACNGT 2 cut(s) 499, 743
HpyCH4IV ACGT 1 cut(s) 855
HpyCH4V TGCA 4 cut(s) 261, 477, 769, 907
HpyF10VI GCNNNNNNNGC 5 cut(s) 169, 207, 423, 483, 1051
HpyF3I CTNAG 5 cut(s) 206, 229, 378, 590, 620
HpySE526I ACGT 1 cut(s) 855
Kzo9I GATC 4 cut(s) 222, 481, 745, 762
LmnI GCTCC 2 cut(s) 94, 607
Lsp1109I GCAGC 2 cut(s) 386, 887
LweI GCATC 4 cut(s) 76, 205, 778, 1090
MaeI CTAG 6 cut(s) 411, 614, 626, 725, 1047, 1055
MaeII ACGT 1 cut(s) 855
MaeIII GTNAC 3 cut(s) 392, 860, 982
MalI GATC 4 cut(s) 224, 483, 747, 764
MboI GATC 4 cut(s) 222, 481, 745, 762
MboII GAAGA 4 cut(s) 89, 337, 545, 649
MhlI GDGCHC 2 cut(s) 379, 494
MlsI TGGCCA 2 cut(s) 136, 636
MluCI AATT 4 cut(s) 125, 237, 545, 653
MluI ACGCGT 1 cut(s) 339
MluNI TGGCCA 2 cut(s) 136, 636
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 135, 1134
MnlI CCTC 6 cut(s) 192, 247, 445, 499, 675, 747
Mox20I TGGCCA 2 cut(s) 136, 636
MroXI GAANNNNTTC 2 cut(s) 237, 670
MscI TGGCCA 2 cut(s) 136, 636
MseI TTAA 2 cut(s) 719, 758
MslI CAYNNNNRTG 3 cut(s) 14, 60, 869
Msp20I TGGCCA 2 cut(s) 136, 636
MspA1I CMGCKG 2 cut(s) 210, 399
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 5 cut(s) 169, 207, 423, 483, 1051
NcoI CCATGG 1 cut(s) 292
NdeI CATATG 1 cut(s) 131
NdeII GATC 4 cut(s) 222, 481, 745, 762
NmuCI GTSAC 3 cut(s) 392, 860, 982
NspI RCATGY 1 cut(s) 261
NspV TTCGAA 1 cut(s) 660
PaeI GCATGC 1 cut(s) 261
PagI TCATGA 1 cut(s) 325
PcsI WCGNNNNNNNCGW 2 cut(s) 666, 852
PdmI GAANNNNTTC 2 cut(s) 237, 670
PfeI GAWTC 4 cut(s) 273, 302, 671, 839
PkrI GCNGC 2 cut(s) 401, 902
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
Psp1406I AACGTT 1 cut(s) 855
PspEI GGTNACC 1 cut(s) 982
PspPI GGNCC 3 cut(s) 734, 775, 1080
PstNI CAGNNNCTG 1 cut(s) 474
PvuII CAGCTG 1 cut(s) 399
RseI CAYNNNNRTG 3 cut(s) 14, 60, 869
SalI GTCGAC 1 cut(s) 1004
SaqAI TTAA 2 cut(s) 719, 758
SatI GCNGC 2 cut(s) 400, 901
Sau3AI GATC 4 cut(s) 222, 481, 745, 762
Sau96I GGNCC 3 cut(s) 734, 775, 1080
SchI GAGTC 1 cut(s) 116
SduI GDGCHC 2 cut(s) 379, 494
SfaNI GCATC 4 cut(s) 76, 205, 778, 1090
SfcI CTRYAG 1 cut(s) 1075
SfuI TTCGAA 1 cut(s) 660
SinI GGWCC 2 cut(s) 734, 775
SmiMI CAYNNNNRTG 3 cut(s) 14, 60, 869
SphI GCATGC 1 cut(s) 261
Sse9I AATT 4 cut(s) 125, 237, 545, 653
SsiI CCGC 2 cut(s) 210, 402
SspMI CTAG 6 cut(s) 411, 614, 626, 725, 1047, 1055
StyI CCWWGG 6 cut(s) 292, 446, 625, 724, 1019, 1095
TaaI ACNGT 2 cut(s) 499, 743
TaiI ACGT 1 cut(s) 858
TaqI TCGA 5 cut(s) 84, 249, 504, 660, 1005
TasI AATT 4 cut(s) 125, 237, 545, 653
TfiI GAWTC 4 cut(s) 273, 302, 671, 839
Tru1I TTAA 2 cut(s) 719, 758
Tru9I TTAA 2 cut(s) 719, 758
TscAI CASTG 5 cut(s) 427, 484, 494, 746, 1015
TseFI GTSAC 3 cut(s) 392, 860, 982
TseI GCWGC 2 cut(s) 399, 900
Tsp45I GTSAC 3 cut(s) 392, 860, 982
TspDTI ATGAA 8 cut(s) 24, 78, 118, 164, 342, 368, 596, 822
TspRI CASTG 5 cut(s) 427, 484, 494, 746, 1015
VpaK11BI GGWCC 2 cut(s) 734, 775
XagI CCTNNNNNAGG 1 cut(s) 770
XapI RAATTY 2 cut(s) 545, 653
XceI RCATGY 1 cut(s) 261
XmaJI CCTAGG 2 cut(s) 625, 724
XmiI GTMKAC 1 cut(s) 1005
XmnI GAANNNNTTC 2 cut(s) 237, 670
XspI CTAG 6 cut(s) 411, 614, 626, 725, 1047, 1055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.