Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002164

Physical Location & Seq

Genomic Coordinates Forward (+)

33679789 .. 33680948

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1249100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGCCTTTTTCATTGCATGTGATTTTGACCAAGAGCTGTCTTTGTTTCACAGTGAAAACTTTGGAAACAATTTCTAGAAAATTACGAAACCCTCACTGGAAGAATATCAGCCAAAGTTCTTGCCAAGATGGTGGAGCAGGCTTCTTCAAATACTTTGCTAAACAAATTTTCAGCAATGTGACTTGCAAGTGTTCCTTTCCAAACCATACTTGCCATGTCACAGTCATTGAGATGAAGGGTTTAAATTTAACTGGAGTTATACCTGAGGAACTCGGAAATCTTACACGGTTGGAAAAAATGTATCTTTTGGGGAATCGACTAAATGGTTTAATTCCTACTGATAGCTTTACTTTACTCAGAGAGCTGGACTTGGAAGACAATCAGTTTGAAGGCCCTCTTCCGCAAAACCTCGGGAAGTTGACTCAATTGGAAAAAATCCTTTTTTCAGGAAACAATTTTACTGGTACGATACCAGAATCGTACAGAAATCTGAAGAACTTAATTGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

171

Amino Acids

19.23

Weight (kDa)

8.54

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53430 AT1G53430 AT1G53440
fragaria_vesca	FvH4_3g17940
malus_domestica	MD03G1247100.v1.1 MD03G1248200.v1.1 MD03G1248300.v1.1 MD03G1249100.v1.1 MD03G1249200.v1.1 MD11G1267500.v1.1
prunus_persica	Prupe.4G158000_v2.0.a1 Prupe.4G158000_v2.0.a1
pyrus_communis	pycom03g19620 pycom03g19750 pycom06g03840 pycom11g23530
rosa_chinensis	RchiOBHm_Chr5g0029911 RchiOBHm_Chr5g0029981
rosa_laevigata	RLG00000033201 RLG00000033206
rosa_multiflora	Rmu_sc0003368.1_g000014 Rmu_sc0004542.1_g000020 Rmu_sc0021047.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050050
rosa_rugosa	Rorug05G0115300 Rorug05G0115400 Rorug05G0115500 Rorug05G0115600 Rorug05G0115700 Rorug05G0115800 Rorug05G0115900 Rorug05G0116000 Rorug05G0116100 Rorug05G0116200
rosa_samantha	Rh5AG208900 Rh5AG209100 Rh5BG207700 Rh5CG231100 Rh5CG231800 Rh5DG211900 Rh5DG212500
rosa_wichuraiana	Rw5G019010 Rw5G019050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	401
AcsI	RAATTY	2 cut(s)	165, 244
AcuI	CTGAAG	1 cut(s)	512
AfaI	GTAC	2 cut(s)	466, 482
AgsI	TTSAA	2 cut(s)	148, 389
AluBI	AGCT	3 cut(s)	36, 345, 364
AluI	AGCT	3 cut(s)	36, 345, 364
Ama87I	CYCGRG	1 cut(s)	410
AoxI	GGCC	1 cut(s)	391
ApoI	RAATTY	2 cut(s)	165, 244
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
AspS9I	GGNCC	1 cut(s)	392
AvaI	CYCGRG	1 cut(s)	410
AxyI	CCTNAGG	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	381
BccI	CCATC	1 cut(s)	122
BfaI	CTAG	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	409
Bse1I	ACTGG	3 cut(s)	101, 256, 466
Bse21I	CCTNAGG	1 cut(s)	264
Bse3DI	GCAATG	2 cut(s)	11, 181
BseDI	CCNNGG	1 cut(s)	409
BseMI	GCAATG	2 cut(s)	11, 181
BseMII	CTCAG	2 cut(s)	255, 370
BseNI	ACTGG	3 cut(s)	101, 256, 466
BshFI	GGCC	1 cut(s)	393
BsiHKCI	CYCGRG	1 cut(s)	410
BsnI	GGCC	1 cut(s)	393
BsoBI	CYCGRG	1 cut(s)	410
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	2 cut(s)	256, 369
BsrDI	GCAATG	2 cut(s)	11, 181
BsrI	ACTGG	3 cut(s)	101, 256, 466
BssECI	CCNNGG	1 cut(s)	409
Bst4CI	ACNGT	3 cut(s)	52, 223, 288
Bst6I	CTCTTC	1 cut(s)	402
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	264, 356
BstNSI	RCATGY	1 cut(s)	20
BstV2I	GAAGAC	1 cut(s)	381
BstXI	CCANNNNNNTGG	1 cut(s)	131
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	57, 94
Cac8I	GCNNGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	465, 481
CviAII	CATG	2 cut(s)	17, 215
CviJI	RGCY	6 cut(s)	36, 111, 141, 345, 364, 393
CviKI_1	RGCY	6 cut(s)	36, 111, 141, 345, 364, 393
CviQI	GTAC	2 cut(s)	465, 481
DdeI	CTNAG	2 cut(s)	264, 356
DraI	TTTAAA	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	512
Eco81I	CCTNAGG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	392
FaeI	CATG	2 cut(s)	20, 218
FaiI	YATR	4 cut(s)	18, 207, 216, 260
FalI	AAGNNNNNCTT	4 cut(s)	179, 211, 381, 413
FatI	CATG	2 cut(s)	16, 214
FspBI	CTAG	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	393
Hin1II	CATG	2 cut(s)	20, 218
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HinfI	GANTC	3 cut(s)	313, 421, 476
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	3 cut(s)	275, 359, 492
Hpy188III	TCNNGA	3 cut(s)	75, 412, 447
Hpy8I	GTNNAC	1 cut(s)	420
HpyAV	CCTTC	2 cut(s)	229, 383
HpyCH4III	ACNGT	3 cut(s)	52, 223, 288
HpyCH4V	TGCA	2 cut(s)	16, 186
HpyF3I	CTNAG	2 cut(s)	264, 356
Hsp92II	CATG	2 cut(s)	20, 218
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	8 cut(s)	82, 123, 237, 276, 350, 432, 447, 486
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	178, 217
MboII	GAAGA	5 cut(s)	112, 136, 386, 389, 505
MfeI	CAATTG	1 cut(s)	425
MluCI	AATT	8 cut(s)	69, 80, 165, 244, 330, 425, 454, 501
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	4 cut(s)	102, 259, 405, 419
MseI	TTAA	4 cut(s)	242, 248, 329, 500
MslI	CAYNNNNRTG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	425
NlaIII	CATG	2 cut(s)	20, 218
NmuCI	GTSAC	2 cut(s)	178, 217
NspI	RCATGY	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	313, 476
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PspPI	GGNCC	1 cut(s)	392
RsaI	GTAC	2 cut(s)	466, 482
RsaNI	GTAC	2 cut(s)	465, 481
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	4 cut(s)	242, 248, 329, 500
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	415
SetI	ASST	5 cut(s)	38, 265, 347, 366, 411
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	8 cut(s)	69, 80, 165, 244, 330, 425, 454, 501
SsiI	CCGC	1 cut(s)	401
SspMI	CTAG	1 cut(s)	75
TaaI	ACNGT	3 cut(s)	52, 223, 288
TaqI	TCGA	1 cut(s)	316
TasI	AATT	8 cut(s)	69, 80, 165, 244, 330, 425, 454, 501
TfiI	GAWTC	2 cut(s)	313, 476
Tru1I	TTAA	4 cut(s)	242, 248, 329, 500
Tru9I	TTAA	4 cut(s)	242, 248, 329, 500
TscAI	CASTG	2 cut(s)	57, 101
TseFI	GTSAC	2 cut(s)	178, 217
Tsp45I	GTSAC	2 cut(s)	178, 217
TspDTI	ATGAA	1 cut(s)	248
TspRI	CASTG	2 cut(s)	57, 101
XapI	RAATTY	2 cut(s)	165, 244
XbaI	TCTAGA	1 cut(s)	74
XceI	RCATGY	1 cut(s)	20
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.