Rh5AG209100

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
24696643 .. 24708837
12195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG209100.1

Sequence Viewer

Length: 1491 bp
ATGGGGTTCGTGATTTCGAACTCTAGGATTGGTTTGGTCTTTGCTTTTGGGTTTCTGGTGCTGATTTGCTTCACTGGGTTTGGGTCTCATGCTCAACTCATTCCTCTACAAGAAGTGAAAACTCTTGAAACGATATCCCAGAAACTCCAGAATTCTTTTTGGAACATTAGCCAAAGTTCTTGCCAAGATGGTGGATCAAGCTTTAATAAGAATATCACGGACAAGATTCTAAGCAATGTCACTTGCGACTGTTCCTTCGCAAACAACTCTTGCCATGTCACAAACATAGTAATGTACGGTCTAAATTTAACTGGTATTCTACCTGAGGAATTTGGAGATCTTACATATCTACAAGAACTTGATCTCACTCTTAACTGCATCAGTGGATCCATTCCTGCAGGCATTTCTCGCGCCCCTCTTAGGAATCTGTCTCTTACAGGAAATCGACTAAGTGGTTCTATTCCAAAGGAAATTGGTGACATTGCTACTCTTACTAAGCTTTTGTTGGAAGATAATCAACTTGAAGGGCCTCTTCCTGAAAACCTTGGGAGTTTGAGTTCCTTGAATAGACTCCTTCTTTCTGCGAATAACTTTACAGGGACAATTCCAGAATCATTTGGAAATCTAAAGAACTTAACCGATTTTAGGATAGATGGGAGCCGAATCTCAGGAAAAATACCTACTTTTATTGGAAACTGGACCAAACTTGACAGACTGGATATGCAAGGCACGTCCATGGAAGGCCCCATTCCTTCCACCATATCTTTGCTGACAAAGTTAACTCAATTGAGCATATCTGATTTGAATGGATCAAATTTTAATGTTGATATTGGCCTATCTGCTGGAGCTATTGCTGGCATTGTAGTAGCATCATGTGTGTTGATTGTATTGATTTTGGCAGTCCTTCGATATATGGGTTACTTGGGGGGCAAAGACCTTGAAGATAAAGAACTGCGTGGGCTAGAACTACAAACAGGTTATTTCACCTTACGACAAATTAAAGCTGCCACAGGTAACTTTGATCCTTCAAATAAGATAGGTGAAGGAGGTTTTGGGCCCGTTCACAAGGCCTATGTCCTACAAGAGCAAGGAAATATGTTAGAACTTGTGGATCCAGATCTTGGTTCAAACTACTCCAAAGAAGAGGCGATGACAATGCTTAACTTGGCGCTCTTATGCACCAATCCATCTCCCACTCTCAGACCACCCATGTCATCTGTCGTAAGCATGCTTGAAGGTAAAAGTCCGATTCAAGCACCGTTAATCAAGGGCGACACGATGGAGCAGGATGCGAGGTTCAAAGCCTTTGAGAGACTATCACAAGACAGCCAAACACATGTTTCAACTCTCTCGCAAGATAGTCTTGTAAGAGGAACATCAATGGAAGGTCCATTGATTGATTCTTCGGTTTCTATCGCTAGTAAGGATGAGTCCCATGAACATCCTTCAACAAGCCTACTCAAGGATCTGTACGATGTAAACTTACAGTGA

Protein Analysis

496

Amino Acids

53.56

Weight (kDa)

4.92

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1121
AccII CGCG 1 cut(s) 411
AclWI GGATC 8 cut(s) 202, 381, 394, 817, 1016, 1106, 1119, 1473
AcsI RAATTY 4 cut(s) 151, 304, 329, 814
AfaI GTAC 2 cut(s) 296, 1472
AfiI CCNNNNNNNGG 4 cut(s) 420, 645, 1121, 1462
AflIII ACRYGT 1 cut(s) 1336
AjiI CACGTC 1 cut(s) 732
AjuI GAANNNNNNNTTGG 2 cut(s) 1035, 1067
AloI GAACNNNNNNTCC 4 cut(s) 541, 573, 1280, 1312
AluBI AGCT 4 cut(s) 201, 499, 848, 1004
AluI AGCT 4 cut(s) 201, 499, 848, 1004
Alw26I GTCTC 3 cut(s) 90, 435, 1306
AlwI GGATC 8 cut(s) 202, 381, 394, 817, 1016, 1106, 1119, 1473
AoxI GGCC 5 cut(s) 527, 742, 832, 1055, 1068
ApaI GGGCCC 1 cut(s) 1059
ApeKI GCWGC 1 cut(s) 1004
ApoI RAATTY 4 cut(s) 151, 304, 329, 814
ArsI GACNNNNNNTTYG 2 cut(s) 239, 271
AspLEI GCGC 2 cut(s) 413, 1171
AspS9I GGNCC 6 cut(s) 527, 699, 743, 1055, 1056, 1388
AsuHPI GGTGA 3 cut(s) 488, 976, 1052
AsuII TTCGAA 1 cut(s) 17
AvaII GGWCC 2 cut(s) 699, 1388
AxyI CCTNAGG 1 cut(s) 324
BaeGI GKGCMC 1 cut(s) 1059
BamHI GGATCC 2 cut(s) 386, 1111
BanII GRGCYC 1 cut(s) 1059
BbvI GCAGC 1 cut(s) 991
BccI CCATC 4 cut(s) 182, 647, 1195, 1273
BcgI CGANNNNNNTGC 2 cut(s) 1138, 1172
BcoDI GTCTC 3 cut(s) 90, 435, 1306
BfaI CTAG 3 cut(s) 24, 962, 1419
BfmI CTRYAG 1 cut(s) 396
BfoI RGCGCY 1 cut(s) 1172
BglII AGATCT 2 cut(s) 337, 1117
BisI GCNGC 1 cut(s) 1005
BlsI GCNGC 1 cut(s) 1006
Bme18I GGWCC 2 cut(s) 699, 1388
BmgBI CACGTC 1 cut(s) 732
BmgT120I GGNCC 6 cut(s) 527, 699, 743, 1055, 1056, 1388
BmiI GGNNCC 5 cut(s) 388, 659, 745, 1057, 1113
BmrI ACTGGG 1 cut(s) 84
BmsI GCATC 3 cut(s) 387, 878, 1279
BmuI ACTGGG 1 cut(s) 84
BpmI CTGGAG 2 cut(s) 131, 864
Bpu14I TTCGAA 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 1445
BsaBI GATNNNNATC 1 cut(s) 1116
BsaI GGTCTC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 544, 735
BsaXI ACNNNNNCTCC 2 cut(s) 541, 571
Bsc4I CCNNNNNNNGG 4 cut(s) 420, 645, 1121, 1462
Bse1I ACTGG 4 cut(s) 79, 316, 701, 720
Bse21I CCTNAGG 1 cut(s) 324
Bse3DI GCAATG 2 cut(s) 241, 480
Bse8I GATNNNNATC 1 cut(s) 1116
BseDI CCNNGG 2 cut(s) 544, 735
BseGI GGATG 3 cut(s) 1294, 1432, 1441
BseJI GATNNNNATC 1 cut(s) 1116
BseLI CCNNNNNNNGG 4 cut(s) 420, 645, 1121, 1462
BseMI GCAATG 2 cut(s) 241, 480
BseMII CTCAG 3 cut(s) 315, 681, 1213
BseNI ACTGG 4 cut(s) 79, 316, 701, 720
BseSI GKGCMC 1 cut(s) 1059
BseXI GCAGC 1 cut(s) 991
Bsh1236I CGCG 1 cut(s) 411
BshFI GGCC 5 cut(s) 529, 744, 834, 1057, 1070
BslFI GGGAC 2 cut(s) 613, 1417
BslI CCNNNNNNNGG 4 cut(s) 420, 645, 1121, 1462
BsmAI GTCTC 3 cut(s) 90, 435, 1306
BsmFI GGGAC 2 cut(s) 613, 1417
BsnI GGCC 5 cut(s) 529, 744, 834, 1057, 1070
Bso31I GGTCTC 1 cut(s) 90
Bsp119I TTCGAA 1 cut(s) 17
Bsp120I GGGCCC 1 cut(s) 1055
Bsp1286I GDGCHC 1 cut(s) 1059
Bsp143I GATC 9 cut(s) 194, 337, 361, 386, 809, 1021, 1111, 1117, 1465
Bsp19I CCATGG 1 cut(s) 735
BspANI GGCC 5 cut(s) 529, 744, 834, 1057, 1070
BspCNI CTCAG 3 cut(s) 316, 680, 1212
BspFNI CGCG 1 cut(s) 411
BspLI GGNNCC 5 cut(s) 388, 659, 745, 1057, 1113
BspMAI CTGCAG 1 cut(s) 400
BspPI GGATC 8 cut(s) 202, 381, 394, 817, 1016, 1106, 1119, 1473
BspT104I TTCGAA 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 90
BsrDI GCAATG 2 cut(s) 241, 480
BsrI ACTGG 4 cut(s) 79, 316, 701, 720
BssECI CCNNGG 2 cut(s) 544, 735
BssMI GATC 9 cut(s) 194, 337, 361, 386, 809, 1021, 1111, 1117, 1465
BssT1I CCWWGG 2 cut(s) 544, 735
Bst4CI ACNGT 4 cut(s) 251, 299, 1260, 1488
Bst6I CTCTTC 2 cut(s) 537, 1137
BstBI TTCGAA 1 cut(s) 17
BstC8I GCNNGC 3 cut(s) 400, 856, 1229
BstDEI CTNAG 7 cut(s) 230, 324, 419, 449, 495, 667, 1199
BstDSI CCRYGG 1 cut(s) 735
BstENI CCTNNNNNAGG 1 cut(s) 1460
BstF5I GGATG 3 cut(s) 1294, 1432, 1441
BstFNI CGCG 1 cut(s) 411
BstH2I RGCGCY 1 cut(s) 1172
BstHHI GCGC 2 cut(s) 413, 1171
BstKTI GATC 9 cut(s) 197, 340, 364, 389, 812, 1024, 1114, 1120, 1468
BstMAI GTCTC 3 cut(s) 90, 435, 1306
BstMBI GATC 9 cut(s) 194, 337, 361, 386, 809, 1021, 1111, 1117, 1465
BstMWI GCNNNNNNNGC 1 cut(s) 408
BstNSI RCATGY 2 cut(s) 1231, 1340
BstSFI CTRYAG 1 cut(s) 396
BstSLI GKGCMC 1 cut(s) 1059
BstUI CGCG 1 cut(s) 411
BstV1I GCAGC 1 cut(s) 991
BstX2I RGATCY 5 cut(s) 337, 386, 1111, 1117, 1465
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 5 cut(s) 337, 386, 1111, 1117, 1465
Bsu36I CCTNAGG 1 cut(s) 324
BsuRI GGCC 5 cut(s) 529, 744, 834, 1057, 1070
BtgI CCRYGG 1 cut(s) 735
BtgZI GCGATG 1 cut(s) 1163
BtrI CACGTC 1 cut(s) 732
BtsCI GGATG 3 cut(s) 1294, 1432, 1441
BtsIMutI CAGTG 2 cut(s) 72, 388
Cac8I GCNNGC 3 cut(s) 400, 856, 1229
CfoI GCGC 2 cut(s) 413, 1171
Cfr13I GGNCC 6 cut(s) 527, 699, 743, 1055, 1056, 1388
Csp6I GTAC 2 cut(s) 295, 1471
CviAII CATG 8 cut(s) 89, 275, 736, 873, 1210, 1228, 1337, 1436
CviQI GTAC 2 cut(s) 295, 1471
DdeI CTNAG 7 cut(s) 230, 324, 419, 449, 495, 667, 1199
DpnI GATC 9 cut(s) 196, 339, 363, 388, 811, 1023, 1113, 1119, 1467
DpnII GATC 9 cut(s) 194, 337, 361, 386, 809, 1021, 1111, 1117, 1465
Eam1104I CTCTTC 2 cut(s) 537, 1137
EarI CTCTTC 2 cut(s) 537, 1137
Eco130I CCWWGG 2 cut(s) 544, 735
Eco147I AGGCCT 1 cut(s) 1070
Eco24I GRGCYC 1 cut(s) 1059
Eco31I GGTCTC 1 cut(s) 90
Eco32I GATATC 1 cut(s) 135
Eco47I GGWCC 2 cut(s) 699, 1388
Eco81I CCTNAGG 1 cut(s) 324
EcoNI CCTNNNNNAGG 1 cut(s) 1460
EcoO109I RGGNCCY 2 cut(s) 527, 743
EcoRI GAATTC 1 cut(s) 151
EcoRV GATATC 1 cut(s) 135
EcoT14I CCWWGG 2 cut(s) 544, 735
EcoT38I GRGCYC 1 cut(s) 1059
ErhI CCWWGG 2 cut(s) 544, 735
FaeI CATG 8 cut(s) 92, 278, 739, 876, 1213, 1231, 1340, 1439
FalI AAGNNNNNCTT 4 cut(s) 516, 548, 1347, 1379
FaqI GGGAC 2 cut(s) 613, 1417
FatI CATG 8 cut(s) 88, 274, 735, 872, 1209, 1227, 1336, 1435
Fnu4HI GCNGC 1 cut(s) 1005
FokI GGATG 3 cut(s) 1301, 1428, 1439
FriOI GRGCYC 1 cut(s) 1059
Fsp4HI GCNGC 1 cut(s) 1005
FspBI CTAG 3 cut(s) 24, 962, 1419
GlaI GCGC 2 cut(s) 412, 1170
GluI GCNGC 1 cut(s) 1005
GsuI CTGGAG 2 cut(s) 131, 864
HaeII RGCGCY 1 cut(s) 1172
HaeIII GGCC 5 cut(s) 529, 744, 834, 1057, 1070
HhaI GCGC 2 cut(s) 413, 1171
Hin1II CATG 8 cut(s) 92, 278, 739, 876, 1213, 1231, 1340, 1439
Hin6I GCGC 2 cut(s) 411, 1169
HinP1I GCGC 2 cut(s) 411, 1169
HincII GTYRAC 1 cut(s) 780
HindII GTYRAC 1 cut(s) 780
HindIII AAGCTT 2 cut(s) 199, 497
HinfI GANTC 8 cut(s) 226, 424, 570, 611, 663, 1249, 1400, 1430
HpaI GTTAAC 1 cut(s) 780
HphI GGTGA 3 cut(s) 488, 976, 1052
Hpy166II GTNNAC 3 cut(s) 780, 1063, 1480
Hpy188I TCNGA 3 cut(s) 799, 1202, 1248
Hpy188III TCNNGA 7 cut(s) 10, 125, 148, 536, 608, 669, 1115
Hpy8I GTNNAC 3 cut(s) 780, 1063, 1480
HpyCH4III ACNGT 4 cut(s) 251, 299, 1260, 1488
HpyCH4IV ACGT 1 cut(s) 731
HpyCH4V TGCA 4 cut(s) 378, 398, 724, 1179
HpyF10VI GCNNNNNNNGC 1 cut(s) 408
HpyF3I CTNAG 7 cut(s) 230, 324, 419, 449, 495, 667, 1199
HpySE526I ACGT 1 cut(s) 731
Hsp92II CATG 8 cut(s) 92, 278, 739, 876, 1213, 1231, 1340, 1439
HspAI GCGC 2 cut(s) 411, 1169
KspAI GTTAAC 1 cut(s) 780
Kzo9I GATC 9 cut(s) 194, 337, 361, 386, 809, 1021, 1111, 1117, 1465
LmnI GCTCC 3 cut(s) 657, 845, 1282
Lsp1109I GCAGC 1 cut(s) 991
LweI GCATC 3 cut(s) 387, 878, 1279
MaeI CTAG 3 cut(s) 24, 962, 1419
MaeII ACGT 1 cut(s) 731
MaeIII GTNAC 5 cut(s) 238, 277, 476, 917, 1013
MalI GATC 9 cut(s) 196, 339, 363, 388, 811, 1023, 1113, 1119, 1467
MboI GATC 9 cut(s) 194, 337, 361, 386, 809, 1021, 1111, 1117, 1465
MboII GAAGA 5 cut(s) 521, 524, 953, 1154, 1395
MfeI CAATTG 1 cut(s) 785
MflI RGATCY 5 cut(s) 337, 386, 1111, 1117, 1465
MhlI GDGCHC 1 cut(s) 1059
MluCI AATT 8 cut(s) 151, 304, 329, 471, 603, 785, 814, 996
MlyI GAGTC 2 cut(s) 564, 1439
MmeI TCCRAC 1 cut(s) 486
MnlI CCTC 8 cut(s) 114, 319, 426, 540, 1040, 1138, 1287, 1364
MseI TTAA 9 cut(s) 204, 308, 372, 635, 779, 819, 999, 1161, 1262
MslI CAYNNNNRTG 2 cut(s) 290, 734
MunI CAATTG 1 cut(s) 785
MvnI CGCG 1 cut(s) 411
MwoI GCNNNNNNNGC 1 cut(s) 408
NcoI CCATGG 1 cut(s) 735
NdeII GATC 9 cut(s) 194, 337, 361, 386, 809, 1021, 1111, 1117, 1465
NlaIII CATG 8 cut(s) 92, 278, 739, 876, 1213, 1231, 1340, 1439
NlaIV GGNNCC 5 cut(s) 388, 659, 745, 1057, 1113
NmuCI GTSAC 3 cut(s) 238, 277, 476
NspI RCATGY 2 cut(s) 1231, 1340
NspV TTCGAA 1 cut(s) 17
PaeI GCATGC 1 cut(s) 1231
PceI AGGCCT 1 cut(s) 1070
PciI ACATGT 1 cut(s) 1336
PfeI GAWTC 6 cut(s) 226, 424, 611, 663, 1249, 1400
PflMI CCANNNNNTGG 1 cut(s) 1121
PkrI GCNGC 1 cut(s) 1006
PleI GAGTC 2 cut(s) 564, 1438
PpsI GAGTC 2 cut(s) 564, 1438
PscI ACATGT 1 cut(s) 1336
PspN4I GGNNCC 5 cut(s) 388, 659, 745, 1057, 1113
PspOMI GGGCCC 1 cut(s) 1055
PspPI GGNCC 6 cut(s) 527, 699, 743, 1055, 1056, 1388
PstI CTGCAG 1 cut(s) 400
PsuI RGATCY 5 cut(s) 337, 386, 1111, 1117, 1465
RsaI GTAC 2 cut(s) 296, 1472
RsaNI GTAC 2 cut(s) 295, 1471
RseI CAYNNNNRTG 2 cut(s) 290, 734
SaqAI TTAA 9 cut(s) 204, 308, 372, 635, 779, 819, 999, 1161, 1262
SatI GCNGC 1 cut(s) 1005
Sau3AI GATC 9 cut(s) 194, 337, 361, 386, 809, 1021, 1111, 1117, 1465
Sau96I GGNCC 6 cut(s) 527, 699, 743, 1055, 1056, 1388
SbfI CCTGCAGG 1 cut(s) 400
SchI GAGTC 2 cut(s) 564, 1439
SdaI CCTGCAGG 1 cut(s) 400
SduI GDGCHC 1 cut(s) 1059
SfaNI GCATC 3 cut(s) 387, 878, 1279
SfcI CTRYAG 1 cut(s) 396
SfuI TTCGAA 1 cut(s) 17
SinI GGWCC 2 cut(s) 699, 1388
SmiMI CAYNNNNRTG 2 cut(s) 290, 734
SmlI CTYRAG 1 cut(s) 1460
SmoI CTYRAG 1 cut(s) 1460
SphI GCATGC 1 cut(s) 1231
Sse8387I CCTGCAGG 1 cut(s) 400
Sse9I AATT 8 cut(s) 151, 304, 329, 471, 603, 785, 814, 996
SseBI AGGCCT 1 cut(s) 1070
SspMI CTAG 3 cut(s) 24, 962, 1419
StuI AGGCCT 1 cut(s) 1070
StyI CCWWGG 2 cut(s) 544, 735
TaaI ACNGT 4 cut(s) 251, 299, 1260, 1488
TaiI ACGT 1 cut(s) 734
TaqI TCGA 3 cut(s) 17, 445, 907
TasI AATT 8 cut(s) 151, 304, 329, 471, 603, 785, 814, 996
TfiI GAWTC 6 cut(s) 226, 424, 611, 663, 1249, 1400
Tru1I TTAA 9 cut(s) 204, 308, 372, 635, 779, 819, 999, 1161, 1262
Tru9I TTAA 9 cut(s) 204, 308, 372, 635, 779, 819, 999, 1161, 1262
TscAI CASTG 2 cut(s) 79, 388
TseFI GTSAC 3 cut(s) 238, 277, 476
TseI GCWGC 1 cut(s) 1004
Tsp45I GTSAC 3 cut(s) 238, 277, 476
TspDTI ATGAA 1 cut(s) 1452
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 2 cut(s) 79, 388
Van91I CCANNNNNTGG 1 cut(s) 1121
VpaK11BI GGWCC 2 cut(s) 699, 1388
XagI CCTNNNNNAGG 1 cut(s) 1460
XapI RAATTY 4 cut(s) 151, 304, 329, 814
XceI RCATGY 2 cut(s) 1231, 1340
XspI CTAG 3 cut(s) 24, 962, 1419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.