Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002164

Physical Location & Seq

Genomic Coordinates Reverse (-)

10293282 .. 10294088

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0115800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGTGTGGTTTGGATCTCCTCTAGGCATAAGAATTGATAAACAAAAAATTTCAAAATTTGATAAATGGTTACATGAAATTCACAGTTCGAGTTCTACAGCTGCTGATAGAAAGTGGTTGCTTACCTTGATTAGCTTTTTCTGCTGGAAGATCTGGACTGCTAGATGTGAGTTCATTTATCAAATGAAGCCGATACTTCCTCAGTCGATTATCTTGAGTGGGAGTAATCTGGCTTCTGAGTTTGGGGAAGCAAAGAGATGGATTGCTTCACGCCTCCCTCTTCCAAATCACTCTCACTCCTCCAAATGGATCCCACCCCCTCCTGGTATTGTAAAAATCAATGTTGATGCAGCTTGGTCCGATGCCTCAAAAGCCTGTGGTTTAGGTGTTGTGCTTAGGGATCACCCGGGAGCTGTAGTAGGTGGTTCTATCAGATCAGATATGTGTGGCTCTGCATTGGTTGCAGAAGCGAAAGCAATTTTAGATGGAGTTAATTATGCTTTGCAGCACGACATTACTAAGGTGATTGTGGAATCTGATGCCTTAGAGGATTGGATTCCCCGAAAAGTGAATGCAGCTGCCCACACGGCGGCCTCGCTTGCCAAAGAGACGGTGGGTCTTCACAGATGGGCAAGCACGCCACCACCATCTCTGCTTCATGTCCTCAAGTCTGATGGCCTCCCCTGCCCTCCAGCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

233

Amino Acids

25.44

Weight (kDa)

8.98

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	114 - 181	1.4e-12	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53430 AT1G53430 AT1G53440
fragaria_vesca	FvH4_3g17940
malus_domestica	MD03G1247100.v1.1 MD03G1248200.v1.1 MD03G1248300.v1.1 MD03G1249100.v1.1 MD03G1249200.v1.1 MD11G1267500.v1.1
prunus_persica	Prupe.4G158000_v2.0.a1 Prupe.4G158000_v2.0.a1
pyrus_communis	pycom03g19620 pycom03g19750 pycom06g03840 pycom11g23530
rosa_chinensis	RchiOBHm_Chr5g0029911 RchiOBHm_Chr5g0029981
rosa_laevigata	RLG00000033201 RLG00000033206
rosa_multiflora	Rmu_sc0003368.1_g000014 Rmu_sc0004542.1_g000020 Rmu_sc0021047.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050050
rosa_rugosa	Rorug05G0115300 Rorug05G0115400 Rorug05G0115500 Rorug05G0115600 Rorug05G0115700 Rorug05G0115800 Rorug05G0115900 Rorug05G0116000 Rorug05G0116100 Rorug05G0116200
rosa_samantha	Rh5AG208900 Rh5AG209100 Rh5BG207700 Rh5CG231100 Rh5CG231800 Rh5DG211900 Rh5DG212500
rosa_wichuraiana	Rw5G019010 Rw5G019050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	590
AclWI	GGATC	4 cut(s)	22, 304, 317, 408
AcsI	RAATTY	3 cut(s)	48, 56, 78
AfiI	CCNNNNNNNGG	3 cut(s)	306, 323, 589
AgsI	TTSAA	1 cut(s)	54
AhdI	GACNNNNNGTC	1 cut(s)	615
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	6 cut(s)	101, 135, 353, 413, 578, 695
AluI	AGCT	6 cut(s)	101, 135, 353, 413, 578, 695
Alw26I	GTCTC	1 cut(s)	602
AlwI	GGATC	4 cut(s)	22, 304, 317, 408
AlwNI	CAGNNNCTG	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	406
AoxI	GGCC	2 cut(s)	591, 676
ApeKI	GCWGC	5 cut(s)	101, 350, 505, 575, 578
ApoI	RAATTY	3 cut(s)	48, 56, 78
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	2 cut(s)	407, 408
AsuHPI	GGTGA	2 cut(s)	395, 535
AvaI	CYCGRG	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	357
BamHI	GGATCC	1 cut(s)	309
BarI	GAAGNNNNNNTAC	2 cut(s)	217, 249
BbsI	GAAGAC	1 cut(s)	611
BbvI	GCAGC	5 cut(s)	88, 362, 517, 565, 587
BccI	CCATC	5 cut(s)	252, 479, 621, 655, 668
BceAI	ACGGC	1 cut(s)	603
BciT130I	CCWGG	1 cut(s)	324
BcnI	CCSGG	2 cut(s)	407, 408
BcoDI	GTCTC	1 cut(s)	602
BfaI	CTAG	2 cut(s)	23, 162
BfmI	CTRYAG	2 cut(s)	96, 414
BglI	GCCNNNNNGGC	1 cut(s)	587
BglII	AGATCT	1 cut(s)	150
BisI	GCNGC	6 cut(s)	102, 351, 506, 576, 579, 591
BlsI	GCNGC	6 cut(s)	103, 352, 507, 577, 580, 592
Bme1390I	CCNGG	3 cut(s)	324, 407, 408
Bme18I	GGWCC	1 cut(s)	357
BmeRI	GACNNNNNGTC	1 cut(s)	615
BmeT110I	CYCGRG	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	1 cut(s)	311
BmrFI	CCNGG	3 cut(s)	324, 407, 408
BmsI	GCATC	3 cut(s)	337, 352, 529
BpiI	GAAGAC	1 cut(s)	611
BpmI	CTGGAG	1 cut(s)	675
Bpu10I	CCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	2 cut(s)	235, 650
BpuMI	CCSGG	2 cut(s)	407, 408
BsaJI	CCNNGG	1 cut(s)	406
BsaXI	ACNNNNNCTCC	4 cut(s)	281, 311, 402, 432
Bsc4I	CCNNNNNNNGG	3 cut(s)	306, 323, 589
BseBI	CCWGG	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	406
BseLI	CCNNNNNNNGG	3 cut(s)	306, 323, 589
BseMII	CTCAG	2 cut(s)	215, 228
BseRI	GAGGAG	2 cut(s)	9, 289
BseXI	GCAGC	5 cut(s)	88, 362, 517, 565, 587
BshFI	GGCC	2 cut(s)	593, 678
BsiHKCI	CYCGRG	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	407
BslI	CCNNNNNNNGG	3 cut(s)	306, 323, 589
BsmAI	GTCTC	1 cut(s)	602
BsmBI	CGTCTC	1 cut(s)	602
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	2 cut(s)	593, 678
BsoBI	CYCGRG	1 cut(s)	406
Bsp143I	GATC	5 cut(s)	14, 150, 309, 400, 434
BspACI	CCGC	1 cut(s)	590
BspANI	GGCC	2 cut(s)	593, 678
BspCNI	CTCAG	2 cut(s)	214, 229
BspLI	GGNNCC	1 cut(s)	311
BspPI	GGATC	4 cut(s)	22, 304, 317, 408
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	5 cut(s)	14, 150, 309, 400, 434
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	86, 613
Bst6I	CTCTTC	1 cut(s)	285
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstC8I	GCNNGC	3 cut(s)	600, 634, 638
BstDEI	CTNAG	5 cut(s)	201, 237, 395, 519, 544
BstKTI	GATC	5 cut(s)	17, 153, 312, 403, 437
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	5 cut(s)	14, 150, 309, 400, 434
BstMWI	GCNNNNNNNGC	6 cut(s)	141, 371, 461, 587, 599, 684
BstNI	CCWGG	1 cut(s)	324
BstSCI	CCNGG	3 cut(s)	322, 405, 406
BstSFI	CTRYAG	2 cut(s)	96, 414
BstV1I	GCAGC	5 cut(s)	88, 362, 517, 565, 587
BstV2I	GAAGAC	1 cut(s)	611
BstX2I	RGATCY	3 cut(s)	14, 150, 309
BstYI	RGATCY	3 cut(s)	14, 150, 309
BsuRI	GGCC	2 cut(s)	593, 678
Cac8I	GCNNGC	3 cut(s)	600, 634, 638
CaiI	CAGNNNCTG	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	357
Cfr9I	CCCGGG	1 cut(s)	406
CviAII	CATG	2 cut(s)	74, 659
DdeI	CTNAG	5 cut(s)	201, 237, 395, 519, 544
DpnI	GATC	5 cut(s)	16, 152, 311, 402, 436
DpnII	GATC	5 cut(s)	14, 150, 309, 400, 434
DriI	GACNNNNNGTC	1 cut(s)	615
Eam1104I	CTCTTC	1 cut(s)	285
Eam1105I	GACNNNNNGTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	602
FaeI	CATG	2 cut(s)	77, 662
FaiI	YATR	5 cut(s)	29, 75, 443, 498, 660
FatI	CATG	2 cut(s)	73, 658
Fnu4HI	GCNGC	6 cut(s)	102, 351, 506, 576, 579, 591
Fsp4HI	GCNGC	6 cut(s)	102, 351, 506, 576, 579, 591
FspBI	CTAG	2 cut(s)	23, 162
GluI	GCNGC	6 cut(s)	102, 351, 506, 576, 579, 591
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	2 cut(s)	593, 678
HapII	CCGG	1 cut(s)	407
Hin1II	CATG	2 cut(s)	77, 662
HinfI	GANTC	2 cut(s)	533, 556
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	2 cut(s)	395, 535
Hpy188I	TCNGA	6 cut(s)	238, 361, 434, 439, 538, 673
Hpy188III	TCNNGA	2 cut(s)	154, 214
HpyCH4III	ACNGT	2 cut(s)	86, 613
HpyCH4V	TGCA	5 cut(s)	350, 455, 464, 505, 575
HpyF10VI	GCNNNNNNNGC	6 cut(s)	141, 371, 461, 587, 599, 684
HpyF3I	CTNAG	5 cut(s)	201, 237, 395, 519, 544
Hsp92II	CATG	2 cut(s)	77, 662
Kzo9I	GATC	5 cut(s)	14, 150, 309, 400, 434
LmnI	GCTCC	1 cut(s)	410
LpnPI	CCDG	8 cut(s)	130, 139, 215, 309, 336, 388, 420, 697
Lsp1109I	GCAGC	5 cut(s)	88, 362, 517, 565, 587
LweI	GCATC	3 cut(s)	337, 352, 529
MaeI	CTAG	2 cut(s)	23, 162
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	5 cut(s)	16, 152, 311, 402, 436
MboI	GATC	5 cut(s)	14, 150, 309, 400, 434
MboII	GAAGA	3 cut(s)	160, 272, 611
MflI	RGATCY	3 cut(s)	14, 150, 309
MluCI	AATT	6 cut(s)	33, 48, 56, 78, 477, 493
MseI	TTAA	1 cut(s)	492
MspA1I	CMGCKG	2 cut(s)	101, 578
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	3 cut(s)	324, 407, 408
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	6 cut(s)	141, 371, 461, 587, 599, 684
NciI	CCSGG	2 cut(s)	407, 408
NdeII	GATC	5 cut(s)	14, 150, 309, 400, 434
NlaIII	CATG	2 cut(s)	77, 662
NlaIV	GGNNCC	1 cut(s)	311
PctI	GAATGC	1 cut(s)	577
PfeI	GAWTC	2 cut(s)	533, 556
PkrI	GCNGC	6 cut(s)	103, 352, 507, 577, 580, 592
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	311
PspPI	GGNCC	1 cut(s)	357
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	3 cut(s)	14, 150, 309
PvuII	CAGCTG	2 cut(s)	101, 578
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	6 cut(s)	102, 351, 506, 576, 579, 591
Sau3AI	GATC	5 cut(s)	14, 150, 309, 400, 434
Sau96I	GGNCC	1 cut(s)	357
ScrFI	CCNGG	3 cut(s)	324, 407, 408
SfaNI	GCATC	3 cut(s)	337, 352, 529
SfcI	CTRYAG	2 cut(s)	96, 414
SinI	GGWCC	1 cut(s)	357
SmaI	CCCGGG	1 cut(s)	408
SmlI	CTYRAG	2 cut(s)	214, 665
SmoI	CTYRAG	2 cut(s)	214, 665
Sse9I	AATT	6 cut(s)	33, 48, 56, 78, 477, 493
SsiI	CCGC	1 cut(s)	590
SspMI	CTAG	2 cut(s)	23, 162
StyD4I	CCNGG	3 cut(s)	322, 405, 406
TaaI	ACNGT	2 cut(s)	86, 613
TaqI	TCGA	2 cut(s)	89, 206
TasI	AATT	6 cut(s)	33, 48, 56, 78, 477, 493
TauI	GCSGC	1 cut(s)	593
TfiI	GAWTC	2 cut(s)	533, 556
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TseI	GCWGC	5 cut(s)	101, 350, 505, 575, 578
TspDTI	ATGAA	4 cut(s)	90, 163, 200, 647
TspMI	CCCGGG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	3 cut(s)	48, 56, 78
XcmI	CCANNNNNNNNNTGG	1 cut(s)	610
XmaI	CCCGGG	1 cut(s)	406
XspI	CTAG	2 cut(s)	23, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.