Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002164

Physical Location & Seq

Genomic Coordinates Forward (+)

20221972 .. 20223509

Gene Structure 1538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g19620.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGAGTTTTACTTGTCATGCAGATTTGAAAGGTGTGGAACTACAAACTCGTAAGTTTACCTTTACGGAACTTAAAGATGCCACAGCCAACTTTCACCAAGCCAATAAGATTGGTAAAGATATTTCTTTTAACTATCTTAGTCAAATGCAGGGCATTCTTGCTGATAGAACACAGATTGCTGTTAAGCAGCTTTCTCCCAAATCAAATCAAGGAAATCGTGAATTTTTTAATGAGATAGAGATGCTACATGCTTTGCAACACCCTAATCTTGTATACCTATACGGATATTGTATTGAAGAAAATCAGTTATTCCTTGTCTACGAGTACATGGAAAACAATAGCGTTTATCATGCTTTGTTTGGTAAGTATCACTTTTGTACACCTACATTTCATTTGGTCCATGGGGCAAAAGAAAGTCGGTTGGATTTGGATTGGGCAACGAGGCGTAAGATATGTGTTGGTATAGCAAAAGGTTTGGCTTACCTTCATGATGGATCAAGCTTGAGGGTTATTCATAGAGATATCAAGGCTTCGAACGTATTGCTTGATAAACATCTTAACCCGAAGATATCGGACTTTGGATTGGCTAAACTTGCCGAAGAGGATAAAACACATATAAGCACCAATCCTGTTGGAACTTTGGCACCAGAATATGCAATTCAAGGTCATCTCACTGACAAAGCAGATGTCTACAGCTTTGGAATTGTTGTACTGGAGATTATCAGTGGGAAGATAAGATTAGATAAAAAAGGATTCTATATTCTTGATTGGGTGCATGATCTCAAATCGAAAGGGAATTTGATGAACTTAGTGGATCGAAGGTTGGGCTCAGAATTCAACAATGAAGAAATGATAGCTACAATCAATGTGGCTCTCCAATGCTGTAATTTAGCTTCAGAGCTTAGGCCTACCATGTCTGAAGTTATGAGCATGCTTGAAGGTAAGGTTGTTGTTCAAGAGTTCGTAGACCCCAATCCCTCATCAAGTAATGAGATGGATCTAATAGTGAATGAAGATTTCCAGTCTATTTTGAAAGGGGCCGCTGGGACACTTGAAGGGCCATCGAATGATTCAGCTGCAGCTCTTGATGATATTATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

368

Amino Acids

41.15

Weight (kDa)

5.69

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53430 AT1G53430 AT1G53440
fragaria_vesca	FvH4_3g17940
malus_domestica	MD03G1247100.v1.1 MD03G1248200.v1.1 MD03G1248300.v1.1 MD03G1249100.v1.1 MD03G1249200.v1.1 MD11G1267500.v1.1
prunus_persica	Prupe.4G158000_v2.0.a1 Prupe.4G158000_v2.0.a1
pyrus_communis	pycom03g19620 pycom03g19750 pycom06g03840 pycom11g23530
rosa_chinensis	RchiOBHm_Chr5g0029911 RchiOBHm_Chr5g0029981
rosa_laevigata	RLG00000033201 RLG00000033206
rosa_multiflora	Rmu_sc0003368.1_g000014 Rmu_sc0004542.1_g000020 Rmu_sc0021047.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050050
rosa_rugosa	Rorug05G0115300 Rorug05G0115400 Rorug05G0115500 Rorug05G0115600 Rorug05G0115700 Rorug05G0115800 Rorug05G0115900 Rorug05G0116000 Rorug05G0116100 Rorug05G0116200
rosa_samantha	Rh5AG208900 Rh5AG209100 Rh5BG207700 Rh5CG231100 Rh5CG231800 Rh5DG211900 Rh5DG212500
rosa_wichuraiana	Rw5G019010 Rw5G019050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	643
AccI	GTMKAC	4 cut(s)	273, 318, 690, 966
AciI	CCGC	1 cut(s)	1041
AclWI	GGATC	3 cut(s)	502, 822, 1005
AcsI	RAATTY	3 cut(s)	221, 796, 833
AcuI	CTGAAG	2 cut(s)	879, 939
AfaI	GTAC	3 cut(s)	326, 379, 711
AgsI	TTSAA	8 cut(s)	28, 296, 662, 838, 938, 956, 1033, 1055
AluBI	AGCT	8 cut(s)	190, 501, 696, 857, 893, 901, 1076, 1082
AluI	AGCT	8 cut(s)	190, 501, 696, 857, 893, 901, 1076, 1082
AlwI	GGATC	3 cut(s)	502, 822, 1005
AoxI	GGCC	3 cut(s)	905, 1038, 1058
ApeKI	GCWGC	3 cut(s)	187, 1076, 1079
ApoI	RAATTY	3 cut(s)	221, 796, 833
ArsI	GACNNNNNNTTYG	2 cut(s)	672, 704
AspS9I	GGNCC	3 cut(s)	397, 1038, 1058
AsuHPI	GGTGA	1 cut(s)	86
AsuII	TTCGAA	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	830
BarI	GAAGNNNNNNTAC	2 cut(s)	877, 909
BbvI	GCAGC	3 cut(s)	199, 1063, 1091
BccI	CCATC	3 cut(s)	485, 988, 1069
BcgI	CGANNNNNNTGC	2 cut(s)	523, 557
BfmI	CTRYAG	2 cut(s)	691, 1077
BisI	GCNGC	4 cut(s)	188, 1041, 1077, 1080
BlsI	GCNGC	4 cut(s)	189, 1042, 1078, 1081
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	3 cut(s)	397, 1038, 1058
BmiI	GGNNCC	2 cut(s)	645, 1039
BmsI	GCATC	2 cut(s)	67, 231
BpmI	CTGGAG	1 cut(s)	734
Bpu10I	CCTNAGC	1 cut(s)	902
Bpu14I	TTCGAA	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	523
BsaBI	GATNNNNATC	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	400
Bse1I	ACTGG	2 cut(s)	717, 1021
Bse8I	GATNNNNATC	1 cut(s)	552
BseDI	CCNNGG	1 cut(s)	400
BseJI	GATNNNNATC	1 cut(s)	552
BseMII	CTCAG	1 cut(s)	843
BseNI	ACTGG	2 cut(s)	717, 1021
BseXI	GCAGC	3 cut(s)	199, 1063, 1091
BseYI	CCCAGC	1 cut(s)	1043
BshFI	GGCC	3 cut(s)	907, 1040, 1060
BshNI	GGYRCC	1 cut(s)	643
BslFI	GGGAC	1 cut(s)	1060
BsmFI	GGGAC	1 cut(s)	1060
BsmI	GAATGC	1 cut(s)	153
BsnI	GGCC	3 cut(s)	907, 1040, 1060
Bsp119I	TTCGAA	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	830
Bsp1407I	TGTACA	1 cut(s)	377
Bsp143I	GATC	4 cut(s)	494, 778, 814, 997
Bsp19I	CCATGG	1 cut(s)	400
BspACI	CCGC	1 cut(s)	1041
BspANI	GGCC	3 cut(s)	907, 1040, 1060
BspCNI	CTCAG	1 cut(s)	842
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	2 cut(s)	645, 1039
BspMAI	CTGCAG	1 cut(s)	1081
BspPI	GGATC	3 cut(s)	502, 822, 1005
BspT104I	TTCGAA	1 cut(s)	533
BspT107I	GGYRCC	1 cut(s)	643
BsrGI	TGTACA	1 cut(s)	377
BsrI	ACTGG	2 cut(s)	717, 1021
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	4 cut(s)	494, 778, 814, 997
BssNAI	GTATAC	1 cut(s)	274
BssT1I	CCWWGG	1 cut(s)	400
Bst1107I	GTATAC	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	594
BstAUI	TGTACA	1 cut(s)	377
BstBI	TTCGAA	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	932
BstDEI	CTNAG	4 cut(s)	137, 808, 829, 902
BstDSI	CCRYGG	1 cut(s)	400
BstKTI	GATC	4 cut(s)	497, 781, 817, 1000
BstMBI	GATC	4 cut(s)	494, 778, 814, 997
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNSI	RCATGY	2 cut(s)	251, 934
BstSFI	CTRYAG	2 cut(s)	691, 1077
BstV1I	GCAGC	3 cut(s)	199, 1063, 1091
BstX2I	RGATCY	1 cut(s)	997
BstYI	RGATCY	1 cut(s)	997
BstZ17I	GTATAC	1 cut(s)	274
BsuRI	GGCC	3 cut(s)	907, 1040, 1060
BtgI	CCRYGG	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	672, 730
Cac8I	GCNNGC	1 cut(s)	932
CciI	TCATGA	1 cut(s)	487
Cfr13I	GGNCC	3 cut(s)	397, 1038, 1058
Csp6I	GTAC	3 cut(s)	325, 378, 710
CspCI	CAANNNNNGTGG	2 cut(s)	849, 884
CviAII	CATG	9 cut(s)	17, 248, 328, 350, 401, 488, 776, 913, 931
CviQI	GTAC	3 cut(s)	325, 378, 710
DdeI	CTNAG	4 cut(s)	137, 808, 829, 902
DpnI	GATC	4 cut(s)	496, 780, 816, 999
DpnII	GATC	4 cut(s)	494, 778, 814, 997
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Eco130I	CCWWGG	1 cut(s)	400
Eco147I	AGGCCT	1 cut(s)	907
Eco24I	GRGCYC	1 cut(s)	830
Eco32I	GATATC	2 cut(s)	523, 570
Eco47I	GGWCC	1 cut(s)	397
Eco57I	CTGAAG	2 cut(s)	879, 939
EcoRI	GAATTC	1 cut(s)	833
EcoRV	GATATC	2 cut(s)	523, 570
EcoT14I	CCWWGG	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	830
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	9 cut(s)	20, 251, 331, 353, 404, 491, 779, 916, 934
FalI	AAGNNNNNCTT	4 cut(s)	44, 76, 356, 388
FaqI	GGGAC	1 cut(s)	1060
FatI	CATG	9 cut(s)	16, 247, 327, 349, 400, 487, 775, 912, 930
FblI	GTMKAC	4 cut(s)	273, 318, 690, 966
Fnu4HI	GCNGC	4 cut(s)	188, 1041, 1077, 1080
FriOI	GRGCYC	1 cut(s)	830
Fsp4HI	GCNGC	4 cut(s)	188, 1041, 1077, 1080
GluI	GCNGC	4 cut(s)	188, 1041, 1077, 1080
GsaI	CCCAGC	1 cut(s)	1047
GsuI	CTGGAG	1 cut(s)	734
HaeIII	GGCC	3 cut(s)	907, 1040, 1060
Hin1II	CATG	9 cut(s)	20, 251, 331, 353, 404, 491, 779, 916, 934
HindIII	AAGCTT	1 cut(s)	499
HinfI	GANTC	2 cut(s)	753, 1070
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	6 cut(s)	57, 274, 319, 380, 691, 967
Hpy188I	TCNGA	4 cut(s)	574, 832, 898, 919
Hpy188III	TCNNGA	5 cut(s)	218, 488, 764, 956, 1085
Hpy8I	GTNNAC	6 cut(s)	57, 274, 319, 380, 691, 967
HpyAV	CCTTC	4 cut(s)	494, 813, 932, 1049
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	6 cut(s)	20, 148, 256, 656, 775, 1079
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	4 cut(s)	137, 808, 829, 902
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	9 cut(s)	20, 251, 331, 353, 404, 491, 779, 916, 934
Kzo9I	GATC	4 cut(s)	494, 778, 814, 997
LpnPI	CCDG	6 cut(s)	134, 642, 660, 698, 1029, 1034
Lsp1109I	GCAGC	3 cut(s)	199, 1063, 1091
LweI	GCATC	2 cut(s)	67, 231
MaeII	ACGT	1 cut(s)	537
MalI	GATC	4 cut(s)	496, 780, 816, 999
MboI	GATC	4 cut(s)	494, 778, 814, 997
MboII	GAAGA	6 cut(s)	308, 577, 611, 742, 857, 1025
MflI	RGATCY	1 cut(s)	997
MhlI	GDGCHC	1 cut(s)	830
MluCI	AATT	6 cut(s)	221, 657, 702, 796, 833, 886
MmeI	TCCRAC	2 cut(s)	402, 613
MnlI	CCTC	4 cut(s)	435, 498, 595, 988
MseI	TTAA	5 cut(s)	72, 129, 183, 228, 558
MspA1I	CMGCKG	2 cut(s)	1043, 1076
Mva1269I	GAATGC	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	593
NcoI	CCATGG	1 cut(s)	400
NdeII	GATC	4 cut(s)	494, 778, 814, 997
NlaIII	CATG	9 cut(s)	20, 251, 331, 353, 404, 491, 779, 916, 934
NlaIV	GGNNCC	2 cut(s)	645, 1039
NspI	RCATGY	2 cut(s)	251, 934
NspV	TTCGAA	1 cut(s)	533
PaeI	GCATGC	1 cut(s)	934
PagI	TCATGA	1 cut(s)	487
PceI	AGGCCT	1 cut(s)	907
PctI	GAATGC	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	753, 1070
PkrI	GCNGC	4 cut(s)	189, 1042, 1078, 1081
PspFI	CCCAGC	1 cut(s)	1043
PspN4I	GGNNCC	2 cut(s)	645, 1039
PspPI	GGNCC	3 cut(s)	397, 1038, 1058
PstI	CTGCAG	1 cut(s)	1081
PsuI	RGATCY	1 cut(s)	997
PvuII	CAGCTG	1 cut(s)	1076
RsaI	GTAC	3 cut(s)	326, 379, 711
RsaNI	GTAC	3 cut(s)	325, 378, 710
SaqAI	TTAA	5 cut(s)	72, 129, 183, 228, 558
SatI	GCNGC	4 cut(s)	188, 1041, 1077, 1080
Sau3AI	GATC	4 cut(s)	494, 778, 814, 997
Sau96I	GGNCC	3 cut(s)	397, 1038, 1058
SduI	GDGCHC	1 cut(s)	830
SfaNI	GCATC	2 cut(s)	67, 231
SfcI	CTRYAG	2 cut(s)	691, 1077
SfuI	TTCGAA	1 cut(s)	533
SinI	GGWCC	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
SphI	GCATGC	1 cut(s)	934
Sse9I	AATT	6 cut(s)	221, 657, 702, 796, 833, 886
SseBI	AGGCCT	1 cut(s)	907
SsiI	CCGC	1 cut(s)	1041
StuI	AGGCCT	1 cut(s)	907
StyI	CCWWGG	1 cut(s)	400
TaiI	ACGT	1 cut(s)	540
TaqI	TCGA	4 cut(s)	533, 788, 817, 1064
TasI	AATT	6 cut(s)	221, 657, 702, 796, 833, 886
TatI	WGTACW	3 cut(s)	324, 377, 709
TauI	GCSGC	1 cut(s)	1043
TfiI	GAWTC	2 cut(s)	753, 1070
Tru1I	TTAA	5 cut(s)	72, 129, 183, 228, 558
Tru9I	TTAA	5 cut(s)	72, 129, 183, 228, 558
TscAI	CASTG	2 cut(s)	679, 730
TseI	GCWGC	3 cut(s)	187, 1076, 1079
TspDTI	ATGAA	6 cut(s)	380, 476, 503, 818, 858, 1026
TspGWI	ACGGA	2 cut(s)	80, 297
TspRI	CASTG	2 cut(s)	679, 730
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	3 cut(s)	221, 796, 833
XceI	RCATGY	2 cut(s)	251, 934
XmiI	GTMKAC	4 cut(s)	273, 318, 690, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.