Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002164

Physical Location & Seq

Genomic Coordinates Forward (+)

10264933 .. 10266138

Gene Structure 1206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0115500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTGTGATGTTTCGGTTTATGACAAGTCGCCATCGCGCTACCGCTTCGACGTTTTCTGTGCGAAAGCCATTGATCTTAGCTGCGGCAACCTTGTCGATATCAGTGTGCAGAACTTCGGCTCCAATGGTCTCCTTAAGCATATCACTGATAGTTGTAGGGGAATCAGACGGCTCTGTTTTGTGTATTCTGACGTAACAAGTAATGGACTGATTAAAGCGGCTTCGAAGCTTCCGCTGTTGGAGGACCTTGAGCTTTCATACTGCGACTACAGACTTAAATTTTTTGAAAACTTACCCGGGAAACAGATACATGGCTATCTTGAAGTGATTGGCCGTTCATGCCCTCGTTTGAAATCATTGAAATTGAACAAGTACAAAAGTAAATGCCTCTGTGATGAACGTGATGGCGATGCGCTTGCTATAGCAGGATCAATGCATGGTTTACACCACCTCCAGCTTTTCGGAAATAAGCTCACTAGCGAGGGCTTGCGTGCCATTCTTGATGGCTGTCCGCTTCTTGAGTCACTTGATCTGCGTCATTGTTTCAATCTTAATGTGGATCAGCGTCTACCTCATGGTCGTAAACTGGATGTAGAATTGAGAAGAAGATGCAGTGACCATATTGAAAAATTGCGGCTTCCTTATGATTCTAAACATGACTATGTCTTGCCACAGAAAAACTTGTCCACAAGGAGTTCGAGGCTGAAACCAAGAACTCGAGCTAGCTGTGAACAGAGTTTGATTTACCGATATTGGCTTCGTGGAGCCCTTCTTGCTTCCCAATGTGCTGAAGTAATGTTTTGTATGTGTCTGCCTCCCAACATACAAAACATTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

279

Amino Acids

31.75

Weight (kDa)

8.96

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53430 AT1G53430 AT1G53440
fragaria_vesca	FvH4_3g17940
malus_domestica	MD03G1247100.v1.1 MD03G1248200.v1.1 MD03G1248300.v1.1 MD03G1249100.v1.1 MD03G1249200.v1.1 MD11G1267500.v1.1
prunus_persica	Prupe.4G158000_v2.0.a1 Prupe.4G158000_v2.0.a1
pyrus_communis	pycom03g19620 pycom03g19750 pycom06g03840 pycom11g23530
rosa_chinensis	RchiOBHm_Chr5g0029911 RchiOBHm_Chr5g0029981
rosa_laevigata	RLG00000033201 RLG00000033206
rosa_multiflora	Rmu_sc0003368.1_g000014 Rmu_sc0004542.1_g000020 Rmu_sc0021047.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050050
rosa_rugosa	Rorug05G0115300 Rorug05G0115400 Rorug05G0115500 Rorug05G0115600 Rorug05G0115700 Rorug05G0115800 Rorug05G0115900 Rorug05G0116000 Rorug05G0116100 Rorug05G0116200
rosa_samantha	Rh5AG208900 Rh5AG209100 Rh5BG207700 Rh5CG231100 Rh5CG231800 Rh5DG211900 Rh5DG212500
rosa_wichuraiana	Rw5G019010 Rw5G019050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	568
AccII	CGCG	1 cut(s)	37
AciI	CCGC	6 cut(s)	43, 84, 218, 233, 512, 634
AclWI	GGATC	2 cut(s)	436, 567
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	810
AfaI	GTAC	1 cut(s)	374
AflII	CTTAAG	1 cut(s)	134
AgsI	TTSAA	7 cut(s)	287, 323, 352, 361, 367, 547, 626
AloI	GAACNNNNNNTCC	2 cut(s)	104, 136
AluBI	AGCT	7 cut(s)	81, 229, 253, 457, 472, 722, 726
AluI	AGCT	7 cut(s)	81, 229, 253, 457, 472, 722, 726
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	2 cut(s)	436, 567
Ama87I	CYCGRG	2 cut(s)	296, 717
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	278
AspLEI	GCGC	2 cut(s)	39, 415
AspS9I	GGNCC	1 cut(s)	244
AsuC2I	CCSGG	2 cut(s)	297, 298
AsuII	TTCGAA	1 cut(s)	224
AsuNHI	GCTAGC	1 cut(s)	722
AvaI	CYCGRG	2 cut(s)	296, 717
AvaII	GGWCC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	769
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	3 cut(s)	40, 398, 497
BceAI	ACGGC	2 cut(s)	185, 318
BcgI	CGANNNNNNTGC	4 cut(s)	76, 110, 398, 432
BcnI	CCSGG	2 cut(s)	297, 298
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	2 cut(s)	477, 723
BfmI	CTRYAG	2 cut(s)	268, 420
BfrI	CTTAAG	1 cut(s)	134
BisI	GCNGC	4 cut(s)	82, 85, 219, 635
BlsI	GCNGC	4 cut(s)	83, 86, 220, 636
Bme1390I	CCNGG	2 cut(s)	297, 298
Bme18I	GGWCC	1 cut(s)	244
BmeT110I	CYCGRG	2 cut(s)	296, 717
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	121, 766
BmrFI	CCNGG	2 cut(s)	297, 298
BmsI	GCATC	2 cut(s)	400, 599
BmtI	GCTAGC	1 cut(s)	726
BpmI	CTGGAG	1 cut(s)	437
Bpu14I	TTCGAA	1 cut(s)	224
BpuEI	CTTGAG	2 cut(s)	269, 539
BpuMI	CCSGG	2 cut(s)	297, 298
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	1 cut(s)	296
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 435, 465
Bse1I	ACTGG	1 cut(s)	591
Bse3DI	GCAATG	1 cut(s)	831
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	595
BseMI	GCAATG	1 cut(s)	831
BseNI	ACTGG	1 cut(s)	591
BseXI	GCAGC	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	333
BsiHKCI	CYCGRG	2 cut(s)	296, 717
BsiSI	CCGG	1 cut(s)	297
BsmAI	GTCTC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	333
Bso31I	GGTCTC	1 cut(s)	134
BsoBI	CYCGRG	2 cut(s)	296, 717
Bsp119I	TTCGAA	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	769
Bsp143I	GATC	4 cut(s)	73, 428, 529, 559
BspACI	CCGC	6 cut(s)	43, 84, 218, 233, 512, 634
BspANI	GGCC	1 cut(s)	333
BspFNI	CGCG	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	121, 766
BspOI	GCTAGC	1 cut(s)	726
BspPI	GGATC	2 cut(s)	436, 567
BspT104I	TTCGAA	1 cut(s)	224
BspTI	CTTAAG	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	831
BsrI	ACTGG	1 cut(s)	591
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	4 cut(s)	73, 428, 529, 559
BstAFI	CTTAAG	1 cut(s)	134
BstBI	TTCGAA	1 cut(s)	224
BstC8I	GCNNGC	4 cut(s)	417, 488, 492, 724
BstDEI	CTNAG	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	595
BstFNI	CGCG	1 cut(s)	37
BstHHI	GCGC	2 cut(s)	39, 415
BstKTI	GATC	4 cut(s)	76, 431, 532, 562
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	4 cut(s)	73, 428, 529, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	339, 773
BstSCI	CCNGG	2 cut(s)	295, 296
BstSFI	CTRYAG	2 cut(s)	268, 420
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	333
BtgZI	GCGATG	2 cut(s)	18, 423
BtsCI	GGATG	1 cut(s)	595
BtsI	GCAGTG	1 cut(s)	619
BtsIMutI	CAGTG	3 cut(s)	109, 144, 619
Cac8I	GCNNGC	4 cut(s)	417, 488, 492, 724
CfoI	GCGC	2 cut(s)	39, 415
Cfr13I	GGNCC	1 cut(s)	244
Cfr9I	CCCGGG	1 cut(s)	296
CseI	GACGC	2 cut(s)	524, 554
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	5 cut(s)	311, 339, 437, 575, 656
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	4 cut(s)	75, 430, 531, 561
DpnII	GATC	4 cut(s)	73, 428, 529, 559
EaeI	YGGCCR	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	769
Eco31I	GGTCTC	1 cut(s)	134
Eco32I	GATATC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	810
Eco88I	CYCGRG	2 cut(s)	296, 717
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRV	GATATC	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	769
FaeI	CATG	5 cut(s)	314, 342, 440, 578, 659
FatI	CATG	5 cut(s)	310, 338, 436, 574, 655
FblI	GTMKAC	1 cut(s)	568
Fnu4HI	GCNGC	4 cut(s)	82, 85, 219, 635
FokI	GGATG	1 cut(s)	602
FriOI	GRGCYC	1 cut(s)	769
Fsp4HI	GCNGC	4 cut(s)	82, 85, 219, 635
FspBI	CTAG	2 cut(s)	477, 723
GlaI	GCGC	2 cut(s)	38, 414
GluI	GCNGC	4 cut(s)	82, 85, 219, 635
GsuI	CTGGAG	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	2 cut(s)	524, 554
HhaI	GCGC	2 cut(s)	39, 415
Hin1II	CATG	5 cut(s)	314, 342, 440, 578, 659
Hin6I	GCGC	2 cut(s)	37, 413
HinP1I	GCGC	2 cut(s)	37, 413
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	3 cut(s)	162, 521, 647
HpaII	CCGG	1 cut(s)	297
Hpy166II	GTNNAC	5 cut(s)	443, 569, 584, 687, 731
Hpy188I	TCNGA	3 cut(s)	167, 190, 464
Hpy188III	TCNNGA	3 cut(s)	320, 500, 518
Hpy8I	GTNNAC	5 cut(s)	443, 569, 584, 687, 731
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	779
HpyCH4IV	ACGT	3 cut(s)	51, 192, 400
HpyCH4V	TGCA	3 cut(s)	109, 436, 612
HpyF10VI	GCNNNNNNNGC	2 cut(s)	339, 773
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	3 cut(s)	51, 192, 400
Hsp92II	CATG	5 cut(s)	314, 342, 440, 578, 659
HspAI	GCGC	2 cut(s)	37, 413
Kzo9I	GATC	4 cut(s)	73, 428, 529, 559
LmnI	GCTCC	2 cut(s)	125, 764
LpnPI	CCDG	4 cut(s)	310, 411, 467, 572
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	2 cut(s)	400, 599
MaeI	CTAG	2 cut(s)	477, 723
MaeII	ACGT	3 cut(s)	51, 192, 400
MaeIII	GTNAC	3 cut(s)	193, 522, 614
MalI	GATC	4 cut(s)	75, 430, 531, 561
MboI	GATC	4 cut(s)	73, 428, 529, 559
MboII	GAAGA	2 cut(s)	615, 618
MhlI	GDGCHC	1 cut(s)	769
MluCI	AATT	4 cut(s)	278, 362, 596, 629
MlyI	GAGTC	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	8 cut(s)	235, 354, 398, 461, 475, 582, 693, 825
Mph1103I	ATGCAT	1 cut(s)	438
MseI	TTAA	4 cut(s)	135, 213, 276, 552
MslI	CAYNNNNRTG	1 cut(s)	660
MspA1I	CMGCKG	1 cut(s)	235
MspCI	CTTAAG	1 cut(s)	134
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	2 cut(s)	297, 298
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	2 cut(s)	339, 773
NciI	CCSGG	2 cut(s)	297, 298
NdeII	GATC	4 cut(s)	73, 428, 529, 559
NheI	GCTAGC	1 cut(s)	722
NlaIII	CATG	5 cut(s)	314, 342, 440, 578, 659
NlaIV	GGNNCC	2 cut(s)	121, 766
NmuCI	GTSAC	2 cut(s)	522, 614
NsiI	ATGCAT	1 cut(s)	438
NspV	TTCGAA	1 cut(s)	224
PaeR7I	CTCGAG	1 cut(s)	717
PfeI	GAWTC	2 cut(s)	162, 647
PflFI	GACNNNGTC	1 cut(s)	662
PkrI	GCNGC	4 cut(s)	83, 86, 220, 636
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
PpuMI	RGGWCCY	1 cut(s)	244
Psp5II	RGGWCCY	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	121, 766
PspPI	GGNCC	1 cut(s)	244
PspPPI	RGGWCCY	1 cut(s)	244
PspXI	VCTCGAGB	1 cut(s)	717
PsyI	GACNNNGTC	1 cut(s)	662
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	660
SaqAI	TTAA	4 cut(s)	135, 213, 276, 552
SatI	GCNGC	4 cut(s)	82, 85, 219, 635
Sau3AI	GATC	4 cut(s)	73, 428, 529, 559
Sau96I	GGNCC	1 cut(s)	244
SchI	GAGTC	1 cut(s)	530
ScrFI	CCNGG	2 cut(s)	297, 298
SduI	GDGCHC	1 cut(s)	769
SfaNI	GCATC	2 cut(s)	400, 599
SfcI	CTRYAG	2 cut(s)	268, 420
Sfr274I	CTCGAG	1 cut(s)	717
SfuI	TTCGAA	1 cut(s)	224
SinI	GGWCC	1 cut(s)	244
SlaI	CTCGAG	1 cut(s)	717
SmaI	CCCGGG	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	660
SmlI	CTYRAG	4 cut(s)	134, 248, 518, 717
SmoI	CTYRAG	4 cut(s)	134, 248, 518, 717
Sse9I	AATT	4 cut(s)	278, 362, 596, 629
SsiI	CCGC	6 cut(s)	43, 84, 218, 233, 512, 634
SspMI	CTAG	2 cut(s)	477, 723
StyD4I	CCNGG	2 cut(s)	295, 296
TaiI	ACGT	3 cut(s)	54, 195, 403
TaqI	TCGA	5 cut(s)	48, 96, 224, 698, 718
TasI	AATT	4 cut(s)	278, 362, 596, 629
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	3 cut(s)	87, 221, 637
TfiI	GAWTC	2 cut(s)	162, 647
Tru1I	TTAA	4 cut(s)	135, 213, 276, 552
Tru9I	TTAA	4 cut(s)	135, 213, 276, 552
TscAI	CASTG	3 cut(s)	109, 151, 619
TseFI	GTSAC	2 cut(s)	522, 614
TseI	GCWGC	1 cut(s)	81
Tsp45I	GTSAC	2 cut(s)	522, 614
TspDTI	ATGAA	3 cut(s)	246, 327, 411
TspMI	CCCGGG	1 cut(s)	296
TspRI	CASTG	3 cut(s)	109, 151, 619
Tth111I	GACNNNGTC	1 cut(s)	662
Vha464I	CTTAAG	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	1 cut(s)	278
XhoI	CTCGAG	1 cut(s)	717
XmaI	CCCGGG	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	568
XspI	CTAG	2 cut(s)	477, 723
Zsp2I	ATGCAT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.