Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002164

Physical Location & Seq

Genomic Coordinates Forward (+)

23984477 .. 23990075

Gene Structure 5599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG231100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGGGTTCGTGATTTCGAACTCTAGGATTGGTTTGGTCTTTGCTTTTGGGTTTCTGGTGCTGATTTGCTTCACTGGGTTTGGGTCTCATGCCCAACTCATTCCTTTACAAGAAGTGAAAACTCTTGAAACGATATCCCAGAAACTCCAGAATTCTTTTTGGAACAACATCAGCCAAAGTTCTTGCCAAGATGGTGGATCAAGCTTTAATAAGAATATCACGGCCAATTTTCTAAGCAATGTCACTTGCGACTGTTCCTTCACAAACAACACTTGCCATGTCACAAACATAGTGATGAAGGGTCTAAATTTAACTGGTATTCTACCTGAGGAATTTGGAAATCTTACTCATCTACAAGAACTTGATCTCACTCGTAACTACATCAATGGATCAATTCCTGCAAAAATTTCTCGTGCCCCTCTTCAGGTTCTGTCTCTTTTAGGAAATCGACTAAGTGGTTCTATTCCAAAGGAAATTGGTGACATTGCTACTCTTACTCAGCTTGTGTTGGAAGATAATCAACTTGAAGGGCCTCTTCCTCAAAACCTTGGGAGTTTGAGTTCCTTGGAGCGACTCCTTCTTTCTGCGAACAACTTTACAGGAATAATTCCAGAATCATTTGGAAATCTAAAGAATTTAACCGATTTTAGGATAGATGGGAGCCGAATCTCAGGGAAAATACCCACTTTTATTGGAAACTGGACCAAACTTGACAGACTGGATATGCAAGGTACGTCCATGGAAGGCCCCATTCCTTCCACCATATCTTTGCTGACAAACTTAACTGAATTGAGGATATCCGATTTGAATGGATCAAGTATGCCTTTTCCTAATTTGGAGGATTTGAAAATTTTGGAAAGAGTGATTCTGAGAAATTGCTCGATTACCGATTCTATCCCTGGCTACATTGGAGAGCTGACAAAATTAAAGGAATTGGACCTGAGCTTTAACAAGTTGACAGGTGAAGTTCCAACGACCCTTGAGAATCTTGTTGCTCTTGATTACATGTTTTTGACCAACAATTTACTGACTGGAGAAGTACCAAGCTGGATATTGAGCAACAAAAATAACTTTGATTTGTCTTACAACAATTTTAGCGGATCACTTACAATTAGTTGTCAACAGTTACCAGTGAATTTAATTTCTAGCTTTTCATCTTCACAAAGCTCGTGGTGCTTGCAGAAGGACCTCCCTTGTTCCACAAAAGCCAAACGTGAGACTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

408

Amino Acids

44.77

Weight (kDa)

5.16

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	164 - 223	2.8e-06	Leucine rich repeat
LRR_14	PF23598	207 - 323	1.3e-09	Leucine-rich repeat region
LRR_8	PF13855	285 - 343	1.4e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53430 AT1G53430 AT1G53440
fragaria_vesca	FvH4_3g17940
malus_domestica	MD03G1247100.v1.1 MD03G1248200.v1.1 MD03G1248300.v1.1 MD03G1249100.v1.1 MD03G1249200.v1.1 MD11G1267500.v1.1
prunus_persica	Prupe.4G158000_v2.0.a1 Prupe.4G158000_v2.0.a1
pyrus_communis	pycom03g19620 pycom03g19750 pycom06g03840 pycom11g23530
rosa_chinensis	RchiOBHm_Chr5g0029911 RchiOBHm_Chr5g0029981
rosa_laevigata	RLG00000033201 RLG00000033206
rosa_multiflora	Rmu_sc0003368.1_g000014 Rmu_sc0004542.1_g000020 Rmu_sc0021047.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050050
rosa_rugosa	Rorug05G0115300 Rorug05G0115400 Rorug05G0115500 Rorug05G0115600 Rorug05G0115700 Rorug05G0115800 Rorug05G0115900 Rorug05G0116000 Rorug05G0116100 Rorug05G0116200
rosa_samantha	Rh5AG208900 Rh5AG209100 Rh5BG207700 Rh5CG231100 Rh5CG231800 Rh5DG211900 Rh5DG212500
rosa_wichuraiana	Rw5G019010 Rw5G019050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1098
AclWI	GGATC	4 cut(s)	205, 397, 820, 1108
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	7 cut(s)	151, 307, 332, 405, 634, 849, 1135
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	2 cut(s)	733, 1041
AfiI	CCNNNNNNNGG	2 cut(s)	424, 648
AflIII	ACRYGT	1 cut(s)	1005
AgsI	TTSAA	4 cut(s)	128, 527, 808, 847
AjnI	CCWGG	1 cut(s)	898
AloI	GAACNNNNNNTCC	2 cut(s)	544, 576
AluBI	AGCT	7 cut(s)	204, 502, 916, 945, 1047, 1149, 1167
AluI	AGCT	7 cut(s)	204, 502, 916, 945, 1047, 1149, 1167
Alw26I	GTCTC	3 cut(s)	90, 438, 1211
AlwI	GGATC	4 cut(s)	205, 397, 820, 1108
AlwNI	CAGNNNCTG	1 cut(s)	430
AoxI	GGCC	3 cut(s)	222, 530, 745
ApoI	RAATTY	7 cut(s)	151, 307, 332, 405, 634, 849, 1135
AspS9I	GGNCC	5 cut(s)	530, 702, 746, 937, 1186
AsuHPI	GGTGA	2 cut(s)	491, 974
AsuII	TTCGAA	1 cut(s)	17
AvaII	GGWCC	3 cut(s)	702, 937, 1186
AxyI	CCTNAGG	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	418
BauI	CACGAG	2 cut(s)	411, 1168
BccI	CCATC	2 cut(s)	185, 650
BceAI	ACGGC	1 cut(s)	237
BciT130I	CCWGG	1 cut(s)	900
BcoDI	GTCTC	3 cut(s)	90, 438, 1211
BfaI	CTAG	2 cut(s)	24, 1146
Bme1390I	CCNGG	1 cut(s)	900
Bme18I	GGWCC	3 cut(s)	702, 937, 1186
BmgT120I	GGNCC	5 cut(s)	530, 702, 746, 937, 1186
BmiI	GGNNCC	2 cut(s)	662, 748
BmrFI	CCNGG	1 cut(s)	900
BmrI	ACTGGG	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	84
BpmI	CTGGAG	2 cut(s)	131, 1053
Bpu10I	CCTNAGC	1 cut(s)	941
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	1001
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	4 cut(s)	547, 564, 738, 898
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 648
Bse1I	ACTGG	6 cut(s)	79, 319, 704, 723, 1036, 1130
Bse21I	CCTNAGG	1 cut(s)	327
Bse3DI	GCAATG	2 cut(s)	244, 483
BseBI	CCWGG	1 cut(s)	900
BseDI	CCNNGG	4 cut(s)	547, 564, 738, 898
BseLI	CCNNNNNNNGG	2 cut(s)	424, 648
BseMI	GCAATG	2 cut(s)	244, 483
BseMII	CTCAG	5 cut(s)	318, 512, 684, 860, 932
BseNI	ACTGG	6 cut(s)	79, 319, 704, 723, 1036, 1130
BseSI	GKGCMC	1 cut(s)	418
BshFI	GGCC	3 cut(s)	224, 532, 747
BslI	CCNNNNNNNGG	2 cut(s)	424, 648
BsmAI	GTCTC	3 cut(s)	90, 438, 1211
BsnI	GGCC	3 cut(s)	224, 532, 747
Bso31I	GGTCTC	1 cut(s)	90
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	5 cut(s)	197, 364, 389, 812, 1100
Bsp19I	CCATGG	1 cut(s)	738
BspACI	CCGC	1 cut(s)	1098
BspANI	GGCC	3 cut(s)	224, 532, 747
BspCNI	CTCAG	5 cut(s)	319, 511, 683, 861, 933
BspLI	GGNNCC	2 cut(s)	662, 748
BspPI	GGATC	4 cut(s)	205, 397, 820, 1108
BspT104I	TTCGAA	1 cut(s)	17
BspTNI	GGTCTC	1 cut(s)	90
BsrDI	GCAATG	2 cut(s)	244, 483
BsrI	ACTGG	6 cut(s)	79, 319, 704, 723, 1036, 1130
BssECI	CCNNGG	4 cut(s)	547, 564, 738, 898
BssMI	GATC	5 cut(s)	197, 364, 389, 812, 1100
BssSI	CACGAG	2 cut(s)	411, 1168
BssT1I	CCWWGG	3 cut(s)	547, 564, 738
Bst2BI	CACGAG	2 cut(s)	411, 1168
Bst2UI	CCWGG	1 cut(s)	900
Bst4CI	ACNGT	3 cut(s)	254, 1125, 1222
Bst6I	CTCTTC	2 cut(s)	426, 540
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	1178
BstDEI	CTNAG	7 cut(s)	233, 327, 452, 498, 670, 869, 941
BstDSI	CCRYGG	1 cut(s)	738
BstKTI	GATC	5 cut(s)	200, 367, 392, 815, 1103
BstMAI	GTCTC	3 cut(s)	90, 438, 1211
BstMBI	GATC	5 cut(s)	197, 364, 389, 812, 1100
BstMWI	GCNNNNNNNGC	1 cut(s)	1173
BstNI	CCWGG	1 cut(s)	900
BstNSI	RCATGY	1 cut(s)	1009
BstSCI	CCNGG	1 cut(s)	898
BstSLI	GKGCMC	1 cut(s)	418
BstXI	CCANNNNNNTGG	1 cut(s)	194
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	3 cut(s)	224, 532, 747
BtgI	CCRYGG	1 cut(s)	738
BtsIMutI	CAGTG	2 cut(s)	72, 1137
Cac8I	GCNNGC	1 cut(s)	1178
CaiI	CAGNNNCTG	1 cut(s)	430
Cfr13I	GGNCC	5 cut(s)	530, 702, 746, 937, 1186
Csp6I	GTAC	2 cut(s)	732, 1040
CspCI	CAANNNNNGTGG	4 cut(s)	673, 708, 1151, 1186
CviAII	CATG	4 cut(s)	89, 278, 739, 1006
CviQI	GTAC	2 cut(s)	732, 1040
DdeI	CTNAG	7 cut(s)	233, 327, 452, 498, 670, 869, 941
DpnI	GATC	5 cut(s)	199, 366, 391, 814, 1102
DpnII	GATC	5 cut(s)	197, 364, 389, 812, 1100
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	2 cut(s)	426, 540
EarI	CTCTTC	2 cut(s)	426, 540
Eco130I	CCWWGG	3 cut(s)	547, 564, 738
Eco31I	GGTCTC	1 cut(s)	90
Eco32I	GATATC	2 cut(s)	135, 798
Eco47I	GGWCC	3 cut(s)	702, 937, 1186
Eco57I	CTGAAG	1 cut(s)	407
Eco81I	CCTNAGG	1 cut(s)	327
EcoO109I	RGGNCCY	3 cut(s)	530, 746, 1186
EcoRI	GAATTC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	898
EcoRV	GATATC	2 cut(s)	135, 798
EcoT14I	CCWWGG	3 cut(s)	547, 564, 738
ErhI	CCWWGG	3 cut(s)	547, 564, 738
FaeI	CATG	4 cut(s)	92, 281, 742, 1009
FaiI	YATR	8 cut(s)	90, 279, 290, 725, 740, 764, 821, 1007
FalI	AAGNNNNNCTT	4 cut(s)	519, 551, 808, 840
FatI	CATG	4 cut(s)	88, 277, 738, 1005
FspBI	CTAG	2 cut(s)	24, 1146
GsuI	CTGGAG	2 cut(s)	131, 1053
HaeIII	GGCC	3 cut(s)	224, 532, 747
Hin1II	CATG	4 cut(s)	92, 281, 742, 1009
HincII	GTYRAC	2 cut(s)	957, 1121
HindII	GTYRAC	2 cut(s)	957, 1121
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	6 cut(s)	573, 614, 666, 865, 890, 985
HphI	GGTGA	2 cut(s)	491, 974
Hpy166II	GTNNAC	2 cut(s)	957, 1121
Hpy188I	TCNGA	2 cut(s)	802, 870
Hpy188III	TCNNGA	5 cut(s)	10, 125, 148, 611, 998
Hpy8I	GTNNAC	2 cut(s)	957, 1121
HpyAV	CCTTC	7 cut(s)	268, 292, 521, 587, 737, 765, 1177
HpyCH4III	ACNGT	3 cut(s)	254, 1125, 1222
HpyCH4IV	ACGT	2 cut(s)	734, 1213
HpyCH4V	TGCA	3 cut(s)	401, 727, 1180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1173
HpyF3I	CTNAG	7 cut(s)	233, 327, 452, 498, 670, 869, 941
HpySE526I	ACGT	2 cut(s)	734, 1213
Hsp92II	CATG	4 cut(s)	92, 281, 742, 1009
Kzo9I	GATC	5 cut(s)	197, 364, 389, 812, 1100
LmnI	GCTCC	2 cut(s)	568, 660
MaeI	CTAG	2 cut(s)	24, 1146
MaeII	ACGT	2 cut(s)	734, 1213
MaeIII	GTNAC	5 cut(s)	241, 280, 374, 479, 1125
MalI	GATC	5 cut(s)	199, 366, 391, 814, 1102
MboI	GATC	5 cut(s)	197, 364, 389, 812, 1100
MboII	GAAGA	4 cut(s)	413, 524, 527, 1149
MhlI	GDGCHC	1 cut(s)	418
MlyI	GAGTC	1 cut(s)	567
MmeI	TCCRAC	2 cut(s)	489, 995
MnlI	CCTC	7 cut(s)	322, 429, 543, 549, 786, 832, 1199
MseI	TTAA	7 cut(s)	207, 311, 638, 782, 926, 948, 1139
MslI	CAYNNNNRTG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	900
MvaI	CCWGG	1 cut(s)	900
MwoI	GCNNNNNNNGC	1 cut(s)	1173
NcoI	CCATGG	1 cut(s)	738
NdeII	GATC	5 cut(s)	197, 364, 389, 812, 1100
NlaIII	CATG	4 cut(s)	92, 281, 742, 1009
NlaIV	GGNNCC	2 cut(s)	662, 748
NmuCI	GTSAC	3 cut(s)	241, 280, 479
NspI	RCATGY	1 cut(s)	1009
NspV	TTCGAA	1 cut(s)	17
PciI	ACATGT	1 cut(s)	1005
PfeI	GAWTC	5 cut(s)	614, 666, 865, 890, 985
PleI	GAGTC	1 cut(s)	567
PpsI	GAGTC	1 cut(s)	567
PpuMI	RGGWCCY	1 cut(s)	1186
PscI	ACATGT	1 cut(s)	1005
Psp5II	RGGWCCY	1 cut(s)	1186
Psp6I	CCWGG	1 cut(s)	898
PspGI	CCWGG	1 cut(s)	898
PspN4I	GGNNCC	2 cut(s)	662, 748
PspPI	GGNCC	5 cut(s)	530, 702, 746, 937, 1186
PspPPI	RGGWCCY	1 cut(s)	1186
PstNI	CAGNNNCTG	1 cut(s)	430
RsaI	GTAC	2 cut(s)	733, 1041
RsaNI	GTAC	2 cut(s)	732, 1040
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	7 cut(s)	207, 311, 638, 782, 926, 948, 1139
Sau3AI	GATC	5 cut(s)	197, 364, 389, 812, 1100
Sau96I	GGNCC	5 cut(s)	530, 702, 746, 937, 1186
SchI	GAGTC	1 cut(s)	567
ScrFI	CCNGG	1 cut(s)	900
SduI	GDGCHC	1 cut(s)	418
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	3 cut(s)	702, 937, 1186
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	980
SmoI	CTYRAG	1 cut(s)	980
SsiI	CCGC	1 cut(s)	1098
SspMI	CTAG	2 cut(s)	24, 1146
StyD4I	CCNGG	1 cut(s)	898
StyI	CCWWGG	3 cut(s)	547, 564, 738
TaaI	ACNGT	3 cut(s)	254, 1125, 1222
TaiI	ACGT	2 cut(s)	737, 1216
TaqI	TCGA	3 cut(s)	17, 448, 881
TfiI	GAWTC	5 cut(s)	614, 666, 865, 890, 985
Tru1I	TTAA	7 cut(s)	207, 311, 638, 782, 926, 948, 1139
Tru9I	TTAA	7 cut(s)	207, 311, 638, 782, 926, 948, 1139
TscAI	CASTG	2 cut(s)	79, 1137
TseFI	GTSAC	3 cut(s)	241, 280, 479
Tsp45I	GTSAC	3 cut(s)	241, 280, 479
TspDTI	ATGAA	2 cut(s)	311, 1143
TspRI	CASTG	2 cut(s)	79, 1137
VpaK11BI	GGWCC	3 cut(s)	702, 937, 1186
XapI	RAATTY	7 cut(s)	151, 307, 332, 405, 634, 849, 1135
XceI	RCATGY	1 cut(s)	1009
XspI	CTAG	2 cut(s)	24, 1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.