Rorug05G0115400

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
10262118 .. 10263233
1116 bp
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UTR
Exon/CDS
Intron
Rorug05G0115400.1

Sequence Viewer

Length: 516 bp
ATGGGATCATTGCAGCCATCTGCTGCTATATTCCTTATTACTCATCTTTTGGTTTTGCCATCAGGGGAATCGCAAACACCATGTACAAAGTCACGAAACCGAAAACGAAATGCTCCTTGTTGCACATGTCCTGATCCCAAACCCCGACGCCCTGCCAAAACTAGGAAACCTCCTCTACCAGAGGGATATGATTATGTTCCTCTGGCAACTTGCCTGGATAAGAATGGTAGCTACTTTCCAAGATTTTCTGATCGTGTTGCTTACATGTCTTGTCTCCGTTGTGGTATGAATGGCGACCACTGGGATCCATTTTTCCCGAACTCGATCAATGATCCGCCAGACTCAGGAGAAGCTGCTCCTGCCCGTAAGTCGTCGTGGAAGTACTATATATTGAGGAATTTCAATCTGAAAGAATATCTTGACAAAAAGATTAAGACTCAAGGGAAACCAGAACCACCACGTAAGAAGGCAGTGAAATCAAAAGCTCCTGCATGTCCAATCCATTGCCGAAACTAA

Protein Analysis

171

Amino Acids

19.27

Weight (kDa)

9.66

Isoelectric Point (pI)

61.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 335
AclWI GGATC 5 cut(s) 13, 128, 299, 312, 326
AcsI RAATTY 1 cut(s) 397
AcyI GRCGYC 1 cut(s) 148
AfaI GTAC 2 cut(s) 85, 383
AfiI CCNNNNNNNGG 2 cut(s) 162, 344
AflIII ACRYGT 2 cut(s) 125, 264
AgsI TTSAA 1 cut(s) 403
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 3 cut(s) 231, 353, 485
AluI AGCT 3 cut(s) 231, 353, 485
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 5 cut(s) 13, 128, 299, 312, 326
ApeKI GCWGC 3 cut(s) 13, 23, 353
ApoI RAATTY 1 cut(s) 397
BamHI GGATCC 1 cut(s) 304
BbvI GCAGC 3 cut(s) 10, 25, 340
BccI CCATC 2 cut(s) 25, 67
BciT130I CCWGG 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 162
BisI GCNGC 3 cut(s) 14, 24, 354
BlsI GCNGC 3 cut(s) 15, 25, 355
BmcAI AGTACT 1 cut(s) 383
Bme1390I CCNGG 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 215
BmrI ACTGGG 1 cut(s) 310
BmuI ACTGGG 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 423
BsaAI YACGTR 1 cut(s) 461
BsaHI GRCGYC 1 cut(s) 148
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 344
Bse1I ACTGG 1 cut(s) 305
Bse3DI GCAATG 2 cut(s) 8, 502
BseBI CCWGG 1 cut(s) 215
BseLI CCNNNNNNNGG 2 cut(s) 162, 344
BseMI GCAATG 2 cut(s) 8, 502
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 305
BseRI GAGGAG 1 cut(s) 162
BseXI GCAGC 3 cut(s) 10, 25, 340
BslI CCNNNNNNNGG 2 cut(s) 162, 344
BsmAI GTCTC 1 cut(s) 278
Bsp1407I TGTACA 1 cut(s) 83
Bsp143I GATC 6 cut(s) 5, 133, 250, 304, 324, 331
BspACI CCGC 1 cut(s) 335
BspCNI CTCAG 1 cut(s) 356
BspLI GGNNCC 1 cut(s) 306
BspPI GGATC 5 cut(s) 13, 128, 299, 312, 326
BsrDI GCAATG 2 cut(s) 8, 502
BsrGI TGTACA 1 cut(s) 83
BsrI ACTGG 1 cut(s) 305
BssMI GATC 6 cut(s) 5, 133, 250, 304, 324, 331
BssNI GRCGYC 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 215
BstACI GRCGYC 1 cut(s) 148
BstAUI TGTACA 1 cut(s) 83
BstBAI YACGTR 1 cut(s) 461
BstDEI CTNAG 1 cut(s) 343
BstKTI GATC 6 cut(s) 8, 136, 253, 307, 327, 334
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 6 cut(s) 5, 133, 250, 304, 324, 331
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNI CCWGG 1 cut(s) 215
BstNSI RCATGY 3 cut(s) 129, 268, 495
BstSCI CCNGG 1 cut(s) 213
BstV1I GCAGC 3 cut(s) 10, 25, 340
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 298, 477
CseI GACGC 1 cut(s) 156
Csp6I GTAC 2 cut(s) 84, 382
CviAII CATG 4 cut(s) 81, 126, 265, 492
CviJI RGCY 4 cut(s) 16, 231, 353, 485
CviKI_1 RGCY 4 cut(s) 16, 231, 353, 485
CviQI GTAC 2 cut(s) 84, 382
DdeI CTNAG 1 cut(s) 343
DpnI GATC 6 cut(s) 7, 135, 252, 306, 326, 333
DpnII GATC 6 cut(s) 5, 133, 250, 304, 324, 331
EciI GGCGGA 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 213
FaeI CATG 4 cut(s) 84, 129, 268, 495
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FatI CATG 4 cut(s) 80, 125, 264, 491
Fnu4HI GCNGC 3 cut(s) 14, 24, 354
Fsp4HI GCNGC 3 cut(s) 14, 24, 354
FspBI CTAG 1 cut(s) 162
GluI GCNGC 3 cut(s) 14, 24, 354
HgaI GACGC 1 cut(s) 156
Hin1I GRCGYC 1 cut(s) 148
Hin1II CATG 4 cut(s) 84, 129, 268, 495
HinfI GANTC 3 cut(s) 68, 341, 436
Hpy188I TCNGA 2 cut(s) 250, 408
Hpy188III TCNNGA 5 cut(s) 93, 131, 316, 345, 419
Hpy99I CGWCG 2 cut(s) 150, 376
HpyAV CCTTC 1 cut(s) 460
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 3 cut(s) 13, 123, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 1 cut(s) 343
HpySE526I ACGT 1 cut(s) 460
Hsp92I GRCGYC 1 cut(s) 148
Hsp92II CATG 4 cut(s) 84, 129, 268, 495
Kzo9I GATC 6 cut(s) 5, 133, 250, 304, 324, 331
LmnI GCTCC 3 cut(s) 118, 361, 490
Lsp1109I GCAGC 3 cut(s) 10, 25, 340
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 460
MaeIII GTNAC 1 cut(s) 90
MalI GATC 6 cut(s) 7, 135, 252, 306, 326, 333
MboI GATC 6 cut(s) 5, 133, 250, 304, 324, 331
MflI RGATCY 1 cut(s) 304
MluCI AATT 1 cut(s) 397
MlyI GAGTC 2 cut(s) 335, 430
MnlI CCTC 5 cut(s) 175, 180, 183, 210, 387
MseI TTAA 1 cut(s) 432
MspR9I CCNGG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeII GATC 6 cut(s) 5, 133, 250, 304, 324, 331
NlaIII CATG 4 cut(s) 84, 129, 268, 495
NlaIV GGNNCC 1 cut(s) 306
NmuCI GTSAC 1 cut(s) 90
NspI RCATGY 3 cut(s) 129, 268, 495
PciI ACATGT 2 cut(s) 125, 264
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 3 cut(s) 15, 25, 355
PleI GAGTC 2 cut(s) 335, 430
PpsI GAGTC 2 cut(s) 335, 430
Ppu21I YACGTR 1 cut(s) 461
PscI ACATGT 2 cut(s) 125, 264
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 306
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 2 cut(s) 85, 383
RsaNI GTAC 2 cut(s) 84, 382
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 3 cut(s) 14, 24, 354
Sau3AI GATC 6 cut(s) 5, 133, 250, 304, 324, 331
ScaI AGTACT 1 cut(s) 383
SchI GAGTC 2 cut(s) 335, 430
ScrFI CCNGG 1 cut(s) 215
SetI ASST 5 cut(s) 172, 233, 355, 463, 487
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
Sse9I AATT 1 cut(s) 397
SsiI CCGC 1 cut(s) 335
SspMI CTAG 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 213
TaiI ACGT 1 cut(s) 463
TaqI TCGA 1 cut(s) 323
TasI AATT 1 cut(s) 397
TatI WGTACW 2 cut(s) 83, 381
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 2 cut(s) 305, 477
TseFI GTSAC 1 cut(s) 90
TseI GCWGC 3 cut(s) 13, 23, 353
Tsp45I GTSAC 1 cut(s) 90
TspDTI ATGAA 1 cut(s) 302
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 2 cut(s) 305, 477
XapI RAATTY 1 cut(s) 397
XceI RCATGY 3 cut(s) 129, 268, 495
XspI CTAG 1 cut(s) 162
ZrmI AGTACT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.