Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002164

Physical Location & Seq

Genomic Coordinates Forward (+)

10305430 .. 10307134

Gene Structure 1705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0116100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGCGTTTGAGAAAACCAATCAAGCTAGAGAAGGGGACAATCACTCTTGCTTTTCGATTCAAGGACGGCATTATGATTGGGGTTGATTCTAGAATCACGCGGAAACAGACTATAGTTTCAGACAAGAAGCAGAAGTTTTTTGAAATATCATCCAACATATTTTGTACAATGATGGGGAGAGTTCATGTCTGGGAAAACATGGCCCTATATGTGCAGCAAAAGGTAAAGAGCGAAGAACGTCTTCGCTGTGCACCTGCAACAGTTTTATATGCAGCAGAAAAGGCGCTTGAACATTTAGAGTATGAATTCAGTGACTATGAATATATGAAGGATGAGGAGGATTTAATATTTGGCACTATCATCGCTGGATGGCAAAAAACAACGGGTTTTGAACTTTATAATGTTAACCTGGATGGCAACAGGGCTTGGAAGACACACTGTAAAAGTTCAATAATACTAGGATCTGGTGCTAAATTTGCTGAGGAGGTTATGGACTCAGTTAAGAACTTCTACGACATGTCTAGTGAAGATGCTGCCGACTTTGCCCTAAAAGCACTGTTTATGGCAACCTTTTGTGATAAGTGGTGTGGAGGGACTCTACATGATTACCAACCCATTGCTGGCGATGATCTCATAAACCTCGGATCAGATGAAGGGCTAGTGGCAGCTCATCTTGTAGCAAAGAAGCGAGACTTTAACATCCACCGCCTCATGTTCAACTCTGAGAATGAGGCTTCAACAGCATACGAAGCTATTGCTAAAGTTGAGCCTAGAGGTGCATCTAGGTTCCCGCGTCTGCAAAATTTTCGTCTTTGTGAATTAAAAATAAAGAGTAAAAGAGTTCCAGTATATGTCCAAAAAAGCTCAAGCGAATTGTTGGAAAGCATATGCGAATTGCCTCCAGCTCCAGAGACCAACCAATGTTGGCTGCCACGCATAATCAGATTGCCTTCATGTTTCGGGTGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

323

Amino Acids

36.8

Weight (kDa)

7.51

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	10 - 194	1.5e-24	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53430 AT1G53430 AT1G53440
fragaria_vesca	FvH4_3g17940
malus_domestica	MD03G1247100.v1.1 MD03G1248200.v1.1 MD03G1248300.v1.1 MD03G1249100.v1.1 MD03G1249200.v1.1 MD11G1267500.v1.1
prunus_persica	Prupe.4G158000_v2.0.a1 Prupe.4G158000_v2.0.a1
pyrus_communis	pycom03g19620 pycom03g19750 pycom06g03840 pycom11g23530
rosa_chinensis	RchiOBHm_Chr5g0029911 RchiOBHm_Chr5g0029981
rosa_laevigata	RLG00000033201 RLG00000033206
rosa_multiflora	Rmu_sc0003368.1_g000014 Rmu_sc0004542.1_g000020 Rmu_sc0021047.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050050
rosa_rugosa	Rorug05G0115300 Rorug05G0115400 Rorug05G0115500 Rorug05G0115600 Rorug05G0115700 Rorug05G0115800 Rorug05G0115900 Rorug05G0116000 Rorug05G0116100 Rorug05G0116200
rosa_samantha	Rh5AG208900 Rh5AG209100 Rh5BG207700 Rh5CG231100 Rh5CG231800 Rh5DG211900 Rh5DG212500
rosa_wichuraiana	Rw5G019010 Rw5G019050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
AarI	CACCTGC	1 cut(s)	262
Acc36I	ACCTGC	1 cut(s)	262
AccII	CGCG	2 cut(s)	100, 793
AciI	CCGC	3 cut(s)	100, 706, 791
AclWI	GGATC	2 cut(s)	469, 652
AcsI	RAATTY	3 cut(s)	305, 473, 802
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	620
AflIII	ACRYGT	1 cut(s)	516
AgsI	TTSAA	7 cut(s)	61, 143, 290, 392, 450, 718, 738
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	5 cut(s)	25, 668, 752, 864, 905
AluI	AGCT	5 cut(s)	25, 668, 752, 864, 905
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	2 cut(s)	684, 905
Alw44I	GTGCAC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	469, 652
AoxI	GGCC	1 cut(s)	201
ApaLI	GTGCAC	1 cut(s)	249
ApeKI	GCWGC	5 cut(s)	214, 272, 533, 665, 928
ApoI	RAATTY	3 cut(s)	305, 473, 802
ArsI	GACNNNNNNTTYG	2 cut(s)	793, 825
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	253
BbsI	GAAGAC	2 cut(s)	233, 437
Bbv12I	GWGCWC	1 cut(s)	253
BbvCI	CCTCAGC	1 cut(s)	480
BbvI	GCAGC	5 cut(s)	226, 284, 520, 677, 915
BccI	CCATC	3 cut(s)	166, 363, 407
BceAI	ACGGC	1 cut(s)	82
BcgI	CGANNNNNNTGC	6 cut(s)	343, 377, 737, 771, 788, 822
BciT130I	CCWGG	1 cut(s)	410
BcoDI	GTCTC	2 cut(s)	684, 905
BfaI	CTAG	7 cut(s)	26, 90, 458, 522, 659, 771, 783
BfmI	CTRYAG	1 cut(s)	111
BfoI	RGCGCY	1 cut(s)	287
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	5 cut(s)	215, 273, 534, 666, 929
BlsI	GCNGC	5 cut(s)	216, 274, 535, 667, 930
Bme1390I	CCNGG	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	788
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	2 cut(s)	520, 788
BpiI	GAAGAC	2 cut(s)	233, 437
BpmI	CTGGAG	2 cut(s)	885, 891
Bpu10I	CCTNAGC	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	850
BsaI	GGTCTC	1 cut(s)	905
BsaJI	CCNNGG	1 cut(s)	640
Bsc4I	CCNNNNNNNGG	1 cut(s)	620
Bse1I	ACTGG	1 cut(s)	845
Bse3DI	GCAATG	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	640
BseGI	GGATG	5 cut(s)	149, 337, 374, 418, 699
BseLI	CCNNNNNNNGG	1 cut(s)	620
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	3 cut(s)	471, 510, 714
BseNI	ACTGG	1 cut(s)	845
BseRI	GAGGAG	2 cut(s)	350, 497
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	5 cut(s)	226, 284, 520, 677, 915
BsgI	GTGCAG	1 cut(s)	233
Bsh1236I	CGCG	2 cut(s)	100, 793
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	253
BslFI	GGGAC	2 cut(s)	49, 607
BslI	CCNNNNNNNGG	1 cut(s)	620
BsmAI	GTCTC	2 cut(s)	684, 905
BsmFI	GGGAC	2 cut(s)	49, 607
BsnI	GGCC	1 cut(s)	203
Bso31I	GGTCTC	1 cut(s)	905
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp1407I	TGTACA	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	461, 628, 644
BspACI	CCGC	3 cut(s)	100, 706, 791
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	3 cut(s)	472, 509, 715
BspFNI	CGCG	2 cut(s)	100, 793
BspLI	GGNNCC	1 cut(s)	788
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	2 cut(s)	469, 652
BspTNI	GGTCTC	1 cut(s)	905
BsrDI	GCAATG	1 cut(s)	615
BsrGI	TGTACA	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	845
BssECI	CCNNGG	1 cut(s)	640
BssMI	GATC	3 cut(s)	461, 628, 644
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	3 cut(s)	262, 440, 558
BstAUI	TGTACA	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	622
BstDEI	CTNAG	3 cut(s)	480, 496, 723
BstF5I	GGATG	5 cut(s)	149, 337, 374, 418, 699
BstFNI	CGCG	2 cut(s)	100, 793
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	3 cut(s)	464, 631, 647
BstMAI	GTCTC	2 cut(s)	684, 905
BstMBI	GATC	3 cut(s)	461, 628, 644
BstMWI	GCNNNNNNNGC	6 cut(s)	281, 476, 542, 551, 740, 749
BstNI	CCWGG	1 cut(s)	410
BstNSI	RCATGY	1 cut(s)	520
BstSCI	CCNGG	1 cut(s)	408
BstSFI	CTRYAG	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	253
BstUI	CGCG	2 cut(s)	100, 793
BstV1I	GCAGC	5 cut(s)	226, 284, 520, 677, 915
BstV2I	GAAGAC	2 cut(s)	233, 437
BstX2I	RGATCY	1 cut(s)	461
BstYI	RGATCY	1 cut(s)	461
BsuRI	GGCC	1 cut(s)	203
BtgZI	GCGATG	2 cut(s)	346, 639
BtsCI	GGATG	5 cut(s)	149, 337, 374, 418, 699
BtsIMutI	CAGTG	3 cut(s)	316, 436, 554
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	622
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	202
CseI	GACGC	1 cut(s)	782
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	7 cut(s)	185, 199, 517, 602, 712, 954, 969
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	3 cut(s)	480, 496, 723
DpnI	GATC	3 cut(s)	463, 630, 646
DpnII	GATC	3 cut(s)	461, 628, 644
Eco31I	GGTCTC	1 cut(s)	905
EcoRI	GAATTC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	408
FaeI	CATG	7 cut(s)	188, 202, 520, 605, 715, 957, 972
FalI	AAGNNNNNCTT	4 cut(s)	225, 257, 677, 709
FaqI	GGGAC	2 cut(s)	49, 607
FatI	CATG	7 cut(s)	184, 198, 516, 601, 711, 953, 968
FauI	CCCGC	1 cut(s)	798
FauNDI	CATATG	1 cut(s)	887
Fnu4HI	GCNGC	5 cut(s)	215, 273, 534, 666, 929
FokI	GGATG	5 cut(s)	136, 344, 381, 425, 686
Fsp4HI	GCNGC	5 cut(s)	215, 273, 534, 666, 929
FspBI	CTAG	7 cut(s)	26, 90, 458, 522, 659, 771, 783
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	5 cut(s)	215, 273, 534, 666, 929
GsuI	CTGGAG	2 cut(s)	885, 891
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	203
HgaI	GACGC	1 cut(s)	782
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	7 cut(s)	188, 202, 520, 605, 715, 957, 972
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	5 cut(s)	57, 86, 93, 494, 595
HpaI	GTTAAC	1 cut(s)	406
Hpy166II	GTNNAC	2 cut(s)	251, 406
Hpy188I	TCNGA	5 cut(s)	121, 644, 649, 724, 944
Hpy188III	TCNNGA	2 cut(s)	90, 908
Hpy8I	GTNNAC	2 cut(s)	251, 406
HpyAV	CCTTC	4 cut(s)	25, 322, 647, 960
HpyCH4III	ACNGT	3 cut(s)	262, 440, 558
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	7 cut(s)	214, 251, 257, 272, 779, 799, 968
HpyF10VI	GCNNNNNNNGC	6 cut(s)	281, 476, 542, 551, 740, 749
HpyF3I	CTNAG	3 cut(s)	480, 496, 723
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	7 cut(s)	188, 202, 520, 605, 715, 957, 972
HspAI	GCGC	1 cut(s)	284
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	461, 628, 644
LmnI	GCTCC	1 cut(s)	910
Lsp1109I	GCAGC	5 cut(s)	226, 284, 520, 677, 915
LweI	GCATC	2 cut(s)	520, 788
MaeI	CTAG	7 cut(s)	26, 90, 458, 522, 659, 771, 783
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	3 cut(s)	463, 630, 646
MboI	GATC	3 cut(s)	461, 628, 644
MboII	GAAGA	4 cut(s)	233, 245, 442, 539
MflI	RGATCY	1 cut(s)	461
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	6 cut(s)	305, 473, 802, 818, 872, 893
MlyI	GAGTC	2 cut(s)	488, 589
MmeI	TCCRAC	2 cut(s)	177, 858
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	5 cut(s)	344, 405, 501, 696, 821
MspR9I	CCNGG	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	410
MvnI	CGCG	2 cut(s)	100, 793
MwoI	GCNNNNNNNGC	6 cut(s)	281, 476, 542, 551, 740, 749
NdeI	CATATG	1 cut(s)	887
NdeII	GATC	3 cut(s)	461, 628, 644
NlaIII	CATG	7 cut(s)	188, 202, 520, 605, 715, 957, 972
NlaIV	GGNNCC	1 cut(s)	788
NmuCI	GTSAC	1 cut(s)	311
NspI	RCATGY	1 cut(s)	520
PaqCI	CACCTGC	1 cut(s)	262
PciI	ACATGT	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	57, 86, 93
PkrI	GCNGC	5 cut(s)	216, 274, 535, 667, 930
PleI	GAGTC	2 cut(s)	488, 589
PpsI	GAGTC	2 cut(s)	488, 589
PscI	ACATGT	1 cut(s)	516
PsiI	TTATAA	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	1 cut(s)	788
PspPI	GGNCC	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	461
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SaqAI	TTAA	5 cut(s)	344, 405, 501, 696, 821
SatI	GCNGC	5 cut(s)	215, 273, 534, 666, 929
Sau3AI	GATC	3 cut(s)	461, 628, 644
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	2 cut(s)	488, 589
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	1 cut(s)	253
SfaNI	GCATC	2 cut(s)	520, 788
SfcI	CTRYAG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	865
SmoI	CTYRAG	1 cut(s)	865
Sse9I	AATT	6 cut(s)	305, 473, 802, 818, 872, 893
SsiI	CCGC	3 cut(s)	100, 706, 791
SspI	AATATT	1 cut(s)	348
SspMI	CTAG	7 cut(s)	26, 90, 458, 522, 659, 771, 783
StyD4I	CCNGG	1 cut(s)	408
TaaI	ACNGT	3 cut(s)	262, 440, 558
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	55
TasI	AATT	6 cut(s)	305, 473, 802, 818, 872, 893
TatI	WGTACW	1 cut(s)	164
TfiI	GAWTC	3 cut(s)	57, 86, 93
Tru1I	TTAA	5 cut(s)	344, 405, 501, 696, 821
Tru9I	TTAA	5 cut(s)	344, 405, 501, 696, 821
TscAI	CASTG	3 cut(s)	316, 443, 561
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	5 cut(s)	214, 272, 533, 665, 928
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	6 cut(s)	173, 318, 333, 341, 666, 942
TspRI	CASTG	3 cut(s)	316, 443, 561
VneI	GTGCAC	1 cut(s)	249
XapI	RAATTY	3 cut(s)	305, 473, 802
XbaI	TCTAGA	1 cut(s)	89
XceI	RCATGY	1 cut(s)	520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	617
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	7 cut(s)	26, 90, 458, 522, 659, 771, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.