Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002164

Physical Location & Seq

Genomic Coordinates Reverse (-)

10280700 .. 10281916

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0115700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTGATACTGGTTGATCTCGATCTCGATCTCGACGAGATAGTCCTCGATAGCAGTTTGGCTCATGGTAGTAAGGCCGAAGAACCAGAGGCTGCTTATTTCCATAGAAAAAGAGAGATTACAAAGACGAGGAGTAAGCCAAAACCTTATGTACCAAAGGGATTTGGAATGCTTCCTATGTACATTGGTATGACGAAGGATGGTGAATACTATGAAGGGCCTGCTGTTAGAGCTGGTCCCATTGTTTGTTTTCATTGTCACAAGCATGGTGACCATTGGGCTAATACGTGCCCAGAAAATGCTTCTGCTTTGGAATCAAGGGTTACAGCTGCTGTCACTAGCAAGAATACATATGATGCTGTTGAGAGAACACAAACTGAACCGGTCGAGACAGAATCTGATCCTGTTGAGAGAACACAAGCTGAACCGGTCGAGCCAGAATCTGATCCTATAGAGAGAACAGAATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

156

Amino Acids

17.39

Weight (kDa)

4.88

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53430 AT1G53430 AT1G53440
fragaria_vesca	FvH4_3g17940
malus_domestica	MD03G1247100.v1.1 MD03G1248200.v1.1 MD03G1248300.v1.1 MD03G1249100.v1.1 MD03G1249200.v1.1 MD11G1267500.v1.1
prunus_persica	Prupe.4G158000_v2.0.a1 Prupe.4G158000_v2.0.a1
pyrus_communis	pycom03g19620 pycom03g19750 pycom06g03840 pycom11g23530
rosa_chinensis	RchiOBHm_Chr5g0029911 RchiOBHm_Chr5g0029981
rosa_laevigata	RLG00000033201 RLG00000033206
rosa_multiflora	Rmu_sc0003368.1_g000014 Rmu_sc0004542.1_g000020 Rmu_sc0021047.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050050
rosa_rugosa	Rorug05G0115300 Rorug05G0115400 Rorug05G0115500 Rorug05G0115600 Rorug05G0115700 Rorug05G0115800 Rorug05G0115900 Rorug05G0116000 Rorug05G0116100 Rorug05G0116200
rosa_samantha	Rh5AG208900 Rh5AG209100 Rh5BG207700 Rh5CG231100 Rh5CG231800 Rh5DG211900 Rh5DG212500
rosa_wichuraiana	Rw5G019010 Rw5G019050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	41
AclWI	GGATC	2 cut(s)	395, 440
AfaI	GTAC	2 cut(s)	153, 182
AgeI	ACCGGT	2 cut(s)	382, 427
AluBI	AGCT	3 cut(s)	233, 329, 422
AluI	AGCT	3 cut(s)	233, 329, 422
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	2 cut(s)	395, 440
AlwNI	CAGNNNCTG	4 cut(s)	92, 332, 398, 443
AoxI	GGCC	2 cut(s)	75, 218
ApeKI	GCWGC	2 cut(s)	92, 329
AsiGI	ACCGGT	2 cut(s)	382, 427
AspS9I	GGNCC	2 cut(s)	218, 236
AsuHPI	GGTGA	3 cut(s)	16, 215, 281
AvaII	GGWCC	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	293
BbvI	GCAGC	2 cut(s)	79, 316
BccI	CCATC	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	450
BisI	GCNGC	2 cut(s)	93, 330
BlsI	GCNGC	2 cut(s)	94, 331
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	2 cut(s)	218, 236
BmiI	GGNNCC	1 cut(s)	238
BmsI	GCATC	1 cut(s)	346
BsaAI	YACGTR	1 cut(s)	288
BsaBI	GATNNNNATC	2 cut(s)	21, 27
BsaWI	WCCGGW	2 cut(s)	382, 427
Bse118I	RCCGGY	2 cut(s)	382, 427
Bse1I	ACTGG	1 cut(s)	15
Bse8I	GATNNNNATC	2 cut(s)	21, 27
BseGI	GGATG	1 cut(s)	205
BseJI	GATNNNNATC	2 cut(s)	21, 27
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	145
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	2 cut(s)	79, 316
Bsh1285I	CGRYCG	2 cut(s)	387, 432
BshFI	GGCC	2 cut(s)	77, 220
BshTI	ACCGGT	2 cut(s)	382, 427
BsiEI	CGRYCG	2 cut(s)	387, 432
BsiSI	CCGG	2 cut(s)	383, 428
BslFI	GGGAC	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	77, 220
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp1407I	TGTACA	1 cut(s)	180
Bsp143I	GATC	5 cut(s)	16, 22, 28, 400, 445
BspANI	GGCC	2 cut(s)	77, 220
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	2 cut(s)	395, 440
BsrFI	RCCGGY	2 cut(s)	382, 427
BsrGI	TGTACA	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	15
BssAI	RCCGGY	2 cut(s)	382, 427
BssMI	GATC	5 cut(s)	16, 22, 28, 400, 445
BstAUI	TGTACA	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	222
BstEII	GGTNACC	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	5 cut(s)	19, 25, 31, 403, 448
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	5 cut(s)	16, 22, 28, 400, 445
BstMCI	CGRYCG	2 cut(s)	387, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstPI	GGTNACC	1 cut(s)	269
BstSFI	CTRYAG	1 cut(s)	450
BstSLI	GKGCMC	1 cut(s)	293
BstV1I	GCAGC	2 cut(s)	79, 316
BsuRI	GGCC	2 cut(s)	77, 220
BtsCI	GGATG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	222
CaiI	CAGNNNCTG	4 cut(s)	92, 332, 398, 443
Cfr10I	RCCGGY	2 cut(s)	382, 427
Cfr13I	GGNCC	2 cut(s)	218, 236
Csp6I	GTAC	2 cut(s)	152, 181
CspAI	ACCGGT	2 cut(s)	382, 427
CviAII	CATG	2 cut(s)	65, 266
CviQI	GTAC	2 cut(s)	152, 181
DpnI	GATC	5 cut(s)	18, 24, 30, 402, 447
DpnII	GATC	5 cut(s)	16, 22, 28, 400, 445
DrdI	GACNNNNNNGTC	1 cut(s)	41
DseDI	GACNNNNNNGTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	236
Eco91I	GGTNACC	1 cut(s)	269
EcoO109I	RGGNCCY	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	269
FaeI	CATG	2 cut(s)	68, 269
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	2 cut(s)	64, 265
FauNDI	CATATG	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	93, 330
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	2 cut(s)	93, 330
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	2 cut(s)	93, 330
HaeIII	GGCC	2 cut(s)	77, 220
HapII	CCGG	2 cut(s)	383, 428
Hin1II	CATG	2 cut(s)	68, 269
HinfI	GANTC	4 cut(s)	314, 395, 440, 464
HpaII	CCGG	2 cut(s)	383, 428
HphI	GGTGA	3 cut(s)	16, 215, 281
Hpy188I	TCNGA	2 cut(s)	400, 445
Hpy188III	TCNNGA	5 cut(s)	20, 26, 32, 388, 468
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	190, 209
HpyCH4IV	ACGT	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	2 cut(s)	68, 269
Kzo9I	GATC	5 cut(s)	16, 22, 28, 400, 445
LpnPI	CCDG	8 cut(s)	99, 219, 234, 306, 396, 417, 441, 450
Lsp1109I	GCAGC	2 cut(s)	79, 316
LweI	GCATC	1 cut(s)	346
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	4 cut(s)	257, 269, 322, 334
MalI	GATC	5 cut(s)	18, 24, 30, 402, 447
MboI	GATC	5 cut(s)	16, 22, 28, 400, 445
MboII	GAAGA	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	293
MnlI	CCTC	3 cut(s)	56, 82, 123
MslI	CAYNNNNRTG	2 cut(s)	188, 264
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	2 cut(s)	383, 428
Mva1269I	GAATGC	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	230
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	5 cut(s)	16, 22, 28, 400, 445
NlaIII	CATG	2 cut(s)	68, 269
NlaIV	GGNNCC	1 cut(s)	238
NmuCI	GTSAC	3 cut(s)	257, 269, 334
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PctI	GAATGC	1 cut(s)	174
PfeI	GAWTC	4 cut(s)	314, 395, 440, 464
PinAI	ACCGGT	2 cut(s)	382, 427
PkrI	GCNGC	2 cut(s)	94, 331
Ppu21I	YACGTR	1 cut(s)	288
PspEI	GGTNACC	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	2 cut(s)	218, 236
PstNI	CAGNNNCTG	4 cut(s)	92, 332, 398, 443
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	2 cut(s)	153, 182
RsaNI	GTAC	2 cut(s)	152, 181
RseI	CAYNNNNRTG	2 cut(s)	188, 264
SatI	GCNGC	2 cut(s)	93, 330
Sau3AI	GATC	5 cut(s)	16, 22, 28, 400, 445
Sau96I	GGNCC	2 cut(s)	218, 236
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	5 cut(s)	148, 235, 290, 331, 424
SfaNI	GCATC	1 cut(s)	346
SfcI	CTRYAG	1 cut(s)	450
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	2 cut(s)	188, 264
SspMI	CTAG	1 cut(s)	339
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	6 cut(s)	21, 27, 33, 48, 387, 432
TatI	WGTACW	1 cut(s)	180
TfiI	GAWTC	4 cut(s)	314, 395, 440, 464
TseFI	GTSAC	3 cut(s)	257, 269, 334
TseI	GCWGC	2 cut(s)	92, 329
Tsp45I	GTSAC	3 cut(s)	257, 269, 334
TspDTI	ATGAA	2 cut(s)	228, 242
VpaK11BI	GGWCC	1 cut(s)	236
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.