Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002164

Physical Location & Seq

Genomic Coordinates Forward (+)

4787002 .. 4787986

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03840.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAACTCAGTCTCTCACATTCAATTTCCATCAAATGCATGCATCCTAGTAGATGGAACCATGATAGATGTTAAGCAGCTTTCTTCCAAATCAAAGCAAGGAAATCGTGAATTTGTGAATGAGATAGGCATGATTTCTGCTTTGCAATACCTTCATCTTGTAAACCTATATGGATGTTGTATTGAAGGAAGTCAAATATATCTTGTATATGAGTTTACGGAAAGTAATAGCGTTTCTCATCCTTTGTTTGATAAATATCACTTTTGTATGCCTACATTTTCTTTGGTCCATGCATGTGATATATGTTGGTATAGCAAAATGTTTGGTTACCTTCATGAGGAATCAAGCATGAAGATTATTCATAGAGATATCAAGACTACTAACGTGTTGGTTGATAGACATCTTAACCCAAAGATATCAAACTTTGGATTGGCCAAACTTGCCAAAGAGGATAAAACACATATAAGCACCTATGCTGCTAGAACTTTGACACCAAAATATGCAATTTGGGCCCATCTGACTGATAGAGAAGATGTTTACAGTTTTGGAATTATTCTACTAGAGATTATTAGTGGGAAGAAGAAATCAACTCAGCAGACAAATGCAGAAGGATTTTATATCCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

210

Amino Acids

23.86

Weight (kDa)

6.78

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53430 AT1G53430 AT1G53440
fragaria_vesca	FvH4_3g17940
malus_domestica	MD03G1247100.v1.1 MD03G1248200.v1.1 MD03G1248300.v1.1 MD03G1249100.v1.1 MD03G1249200.v1.1 MD11G1267500.v1.1
prunus_persica	Prupe.4G158000_v2.0.a1 Prupe.4G158000_v2.0.a1
pyrus_communis	pycom03g19620 pycom03g19750 pycom06g03840 pycom11g23530
rosa_chinensis	RchiOBHm_Chr5g0029911 RchiOBHm_Chr5g0029981
rosa_laevigata	RLG00000033201 RLG00000033206
rosa_multiflora	Rmu_sc0003368.1_g000014 Rmu_sc0004542.1_g000020 Rmu_sc0021047.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050050
rosa_rugosa	Rorug05G0115300 Rorug05G0115400 Rorug05G0115500 Rorug05G0115600 Rorug05G0115700 Rorug05G0115800 Rorug05G0115900 Rorug05G0116000 Rorug05G0116100 Rorug05G0116200
rosa_samantha	Rh5AG208900 Rh5AG209100 Rh5BG207700 Rh5CG231100 Rh5CG231800 Rh5DG211900 Rh5DG212500
rosa_wichuraiana	Rw5G019010 Rw5G019050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	337
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	23, 185
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	16
AoxI	GGCC	2 cut(s)	432, 510
ApaI	GGGCCC	1 cut(s)	514
ApeKI	GCWGC	2 cut(s)	76, 476
ApoI	RAATTY	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	286, 510, 511
AvaII	GGWCC	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	514
BalI	TGGCCA	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	514
BbvI	GCAGC	2 cut(s)	88, 463
BccI	CCATC	3 cut(s)	37, 47, 522
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	3 cut(s)	47, 480, 560
BisI	GCNGC	2 cut(s)	77, 477
BlsI	GCNGC	2 cut(s)	78, 478
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	3 cut(s)	286, 510, 511
BmiI	GGNNCC	2 cut(s)	58, 512
BmsI	GCATC	1 cut(s)	51
BsaBI	GATNNNNATC	2 cut(s)	255, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse8I	GATNNNNATC	2 cut(s)	255, 399
BseGI	GGATG	3 cut(s)	42, 179, 238
BseJI	GATNNNNATC	2 cut(s)	255, 399
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	21, 605
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	2 cut(s)	88, 463
BshFI	GGCC	2 cut(s)	434, 512
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	1 cut(s)	16
BsnI	GGCC	2 cut(s)	434, 512
Bsp120I	GGGCCC	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	514
BspANI	GGCC	2 cut(s)	434, 512
BspCNI	CTCAG	2 cut(s)	20, 604
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	58, 512
Bst4CI	ACNGT	1 cut(s)	542
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	2 cut(s)	7, 591
BstEII	GGTNACC	1 cut(s)	326
BstENI	CCTNNNNNAGG	1 cut(s)	335
BstF5I	GGATG	3 cut(s)	42, 179, 238
BstMAI	GTCTC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 509
BstNSI	RCATGY	2 cut(s)	42, 297
BstPI	GGTNACC	1 cut(s)	326
BstSLI	GKGCMC	1 cut(s)	514
BstV1I	GCAGC	2 cut(s)	88, 463
BsuRI	GGCC	2 cut(s)	434, 512
BtsCI	GGATG	3 cut(s)	42, 179, 238
Cac8I	GCNNGC	1 cut(s)	40
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	3 cut(s)	286, 510, 511
CviAII	CATG	7 cut(s)	39, 61, 130, 290, 294, 335, 349
CviJI	RGCY	3 cut(s)	79, 434, 512
CviKI_1	RGCY	3 cut(s)	79, 434, 512
DdeI	CTNAG	2 cut(s)	7, 591
EaeI	YGGCCR	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	514
Eco32I	GATATC	2 cut(s)	370, 417
Eco47I	GGWCC	1 cut(s)	286
Eco91I	GGTNACC	1 cut(s)	326
EcoNI	CCTNNNNNAGG	1 cut(s)	335
EcoO65I	GGTNACC	1 cut(s)	326
EcoRV	GATATC	2 cut(s)	370, 417
EcoT22I	ATGCAT	3 cut(s)	40, 44, 295
EcoT38I	GRGCYC	1 cut(s)	514
FaeI	CATG	7 cut(s)	42, 64, 133, 293, 297, 338, 352
FatI	CATG	7 cut(s)	38, 60, 129, 289, 293, 334, 348
Fnu4HI	GCNGC	2 cut(s)	77, 477
FokI	GGATG	3 cut(s)	29, 186, 225
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	2 cut(s)	77, 477
FspBI	CTAG	3 cut(s)	47, 480, 560
GluI	GCNGC	2 cut(s)	77, 477
HaeIII	GGCC	2 cut(s)	434, 512
Hin1II	CATG	7 cut(s)	42, 64, 133, 293, 297, 338, 352
HinfI	GANTC	1 cut(s)	341
Hpy166II	GTNNAC	3 cut(s)	163, 216, 538
Hpy188I	TCNGA	1 cut(s)	519
Hpy188III	TCNNGA	3 cut(s)	107, 335, 373
Hpy8I	GTNNAC	3 cut(s)	163, 216, 538
HpyAV	CCTTC	4 cut(s)	161, 179, 341, 602
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	6 cut(s)	38, 42, 145, 293, 503, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 509
HpyF3I	CTNAG	2 cut(s)	7, 591
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	7 cut(s)	42, 64, 133, 293, 297, 338, 352
Lsp1109I	GCAGC	2 cut(s)	88, 463
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	3 cut(s)	47, 480, 560
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	326
MboII	GAAGA	5 cut(s)	75, 364, 542, 589, 592
MhlI	GDGCHC	1 cut(s)	514
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	4 cut(s)	23, 110, 504, 549
MluNI	TGGCCA	1 cut(s)	434
MnlI	CCTC	2 cut(s)	331, 442
Mox20I	TGGCCA	1 cut(s)	434
Mph1103I	ATGCAT	3 cut(s)	40, 44, 295
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	2 cut(s)	72, 405
MslI	CAYNNNNRTG	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	434
MwoI	GCNNNNNNNGC	2 cut(s)	440, 509
NlaIII	CATG	7 cut(s)	42, 64, 133, 293, 297, 338, 352
NlaIV	GGNNCC	2 cut(s)	58, 512
NsiI	ATGCAT	3 cut(s)	40, 44, 295
NspI	RCATGY	2 cut(s)	42, 297
PaeI	GCATGC	1 cut(s)	42
PagI	TCATGA	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	78, 478
PspEI	GGTNACC	1 cut(s)	326
PspN4I	GGNNCC	2 cut(s)	58, 512
PspOMI	GGGCCC	1 cut(s)	510
PspPI	GGNCC	3 cut(s)	286, 510, 511
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	72, 405
SatI	GCNGC	2 cut(s)	77, 477
Sau96I	GGNCC	3 cut(s)	286, 510, 511
SduI	GDGCHC	1 cut(s)	514
SetI	ASST	6 cut(s)	81, 153, 168, 333, 387, 473
SfaNI	GCATC	1 cut(s)	51
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	294
SphI	GCATGC	1 cut(s)	42
Sse9I	AATT	4 cut(s)	23, 110, 504, 549
SspMI	CTAG	3 cut(s)	47, 480, 560
TaaI	ACNGT	1 cut(s)	542
TaiI	ACGT	1 cut(s)	387
TasI	AATT	4 cut(s)	23, 110, 504, 549
TfiI	GAWTC	1 cut(s)	341
Tru1I	TTAA	2 cut(s)	72, 405
Tru9I	TTAA	2 cut(s)	72, 405
TseI	GCWGC	2 cut(s)	76, 476
TspDTI	ATGAA	5 cut(s)	17, 143, 323, 350, 365
TspGWI	ACGGA	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	286
XagI	CCTNNNNNAGG	1 cut(s)	335
XapI	RAATTY	1 cut(s)	110
XceI	RCATGY	2 cut(s)	42, 297
XspI	CTAG	3 cut(s)	47, 480, 560
Zsp2I	ATGCAT	3 cut(s)	40, 44, 295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.