Rorug05G0115600

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
10271506 .. 10274315
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0115600.1

Sequence Viewer

Length: 1077 bp
ATGGTCAGATCCTCAAAGCGAAACCGCCTAAACCCGGCGGAGCTCCCCAATCGAACCCGACGAAACTGGTCGGAGCTCCCCGAGGAAATCACCTTTCAGGTCCTGTCTCGGCTCGGAGCCATCGATGTTCTGACCAGCGCTCAGAAGGTGTGTACGCAATGGCGGCGAATGTGTAAGCACCCGATGGTCTGGCGCACCATCGACATGGCCAACGATCACTTTTTCCACGAAGTTCACTACGATTTGGACAAGATGTGCCGCCACGCCGTTGATCGGAGCTTCGGTCGAGTGGAGGATATCAATGTTGAGTACTTCGGCACCGACGAATTGCTCAAGTACATCACTGATAGTTCAAGTGGAATCAAACGCCTCCGCTTGGCACATTGCCCTAGAATAACTGATAAAGGACTGACTGAAGTGGCTCCGAAACTTCCATTGTTGGAGGACCTTGACATTACGTCCTGCAAAAATATCTCACATGAACCTCTGAAAGTGATTGGTAGCAGTTGCCCTCTTTTAAAATCATTCAAATTGGACACGTGGTTTAAACTACCAGAAGATGGGGTTTATGATGATACAGTTTTCAATATCGAGGAAGGTGAAGACACGGATGTGGAGGTAGAGGCAAATGCCAATGCGGTTGCGGTTGCGGTTGCGGAAGTGGTTATGGATAGGGAGATGGATGCAGATGCGCTTGCTATAGCAGGGTCGATGCATGGTTTACACCATCTTCAGCTTTTTCGGAATGAGCTGACTAATGATGGCTTAAGTGAAATTCTTGATCATTGTCCTCGTCTCGAGTCACTTGATCTGCGCTATTGTTACAATCTCAATCTGAAAGGAGATTTGGGTATCAAATGTGCTGAACGTATTAAGAGATTGCAGCTCCCTGATAACTCCACTGATATTCCTAAAACTTGTTGTAAATCATTATGGCTATATCATGATTCGGATTGCCGATCGACAAGAGAAGAGGTGAATAACTCTTGGGTTGCAGAAAAGAAGAGGTTCATCATTCAATCAACATCAATCTACCAGCTCTACAACCAAGCTCACCCAATTCGATGTGATGTCTAG

Protein Analysis

358

Amino Acids

41.15

Weight (kDa)

5.75

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 23 - 68 4.6e-11 F-box-like
F-box PF00646 23 - 65 3.7e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 317
AccB7I CCANNNNNTGG 1 cut(s) 560
AciI CCGC 9 cut(s) 25, 38, 163, 259, 373, 638, 644, 650, 656
AclWI GGATC 1 cut(s) 3
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 1 cut(s) 774
AcuI CTGAAG 2 cut(s) 435, 716
AcvI CACGTG 1 cut(s) 540
AfaI GTAC 3 cut(s) 154, 311, 338
AfeI AGCGCT 1 cut(s) 139
AfiI CCNNNNNNNGG 4 cut(s) 34, 273, 376, 560
AflII CTTAAG 1 cut(s) 766
AflIII ACRYGT 1 cut(s) 537
AgsI TTSAA 4 cut(s) 354, 529, 586, 1019
AhdI GACNNNNNGTC 1 cut(s) 457
AjuI GAANNNNNNNTTGG 2 cut(s) 830, 862
AleI CACNNNNGTG 1 cut(s) 611
AluBI AGCT 8 cut(s) 43, 76, 279, 736, 751, 886, 1039, 1052
AluI AGCT 8 cut(s) 43, 76, 279, 736, 751, 886, 1039, 1052
Alw21I GWGCWC 2 cut(s) 45, 78
Alw26I GTCTC 2 cut(s) 111, 800
AlwI GGATC 1 cut(s) 3
AlwNI CAGNNNCTG 1 cut(s) 103
Ama87I CYCGRG 2 cut(s) 80, 797
Aor51HI AGCGCT 1 cut(s) 139
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 883
ApoI RAATTY 1 cut(s) 774
Asp700I GAANNNNTTC 1 cut(s) 1007
AspLEI GCGC 4 cut(s) 140, 195, 694, 816
AspS9I GGNCC 2 cut(s) 100, 445
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 4 cut(s) 82, 611, 988, 1046
AvaI CYCGRG 2 cut(s) 80, 797
AvaII GGWCC 2 cut(s) 100, 445
BalI TGGCCA 1 cut(s) 209
BanI GGYRCC 1 cut(s) 317
BanII GRGCYC 2 cut(s) 45, 78
BbrPI CACGTG 1 cut(s) 540
BbsI GAAGAC 1 cut(s) 609
Bbv12I GWGCWC 2 cut(s) 45, 78
BbvI GCAGC 1 cut(s) 895
BccI CCATC 7 cut(s) 128, 178, 206, 554, 673, 735, 755
BceAI ACGGC 1 cut(s) 251
BclI TGATCA 1 cut(s) 781
BcnI CCSGG 1 cut(s) 35
BcoDI GTCTC 2 cut(s) 111, 800
BfaI CTAG 2 cut(s) 390, 1075
BfmI CTRYAG 1 cut(s) 699
BfoI RGCGCY 1 cut(s) 141
BfrI CTTAAG 1 cut(s) 766
BisI GCNGC 3 cut(s) 164, 259, 884
BlsI GCNGC 3 cut(s) 165, 260, 885
BmcAI AGTACT 1 cut(s) 311
Bme1390I CCNGG 1 cut(s) 35
Bme18I GGWCC 2 cut(s) 100, 445
BmeRI GACNNNNNGTC 1 cut(s) 457
BmeT110I CYCGRG 2 cut(s) 80, 797
BmgT120I GGNCC 2 cut(s) 100, 445
BmiI GGNNCC 3 cut(s) 118, 319, 423
BmrFI CCNGG 1 cut(s) 35
BmsI GCATC 3 cut(s) 673, 679, 702
BpiI GAAGAC 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 317
BpuMI CCSGG 1 cut(s) 35
Bsa29I ATCGAT 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 540
BsaJI CCNNGG 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 273, 376, 560
Bse1I ACTGG 1 cut(s) 71
Bse3DI GCAATG 2 cut(s) 164, 382
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 2 cut(s) 616, 688
BseLI CCNNNNNNNGG 4 cut(s) 34, 273, 376, 560
BseMI GCAATG 2 cut(s) 164, 382
BseMII CTCAG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 895
Bsh1285I CGRYCG 2 cut(s) 286, 962
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 317
BshVI ATCGAT 1 cut(s) 123
BsiEI CGRYCG 2 cut(s) 286, 962
BsiHKAI GWGCWC 2 cut(s) 45, 78
BsiHKCI CYCGRG 2 cut(s) 80, 797
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 4 cut(s) 34, 273, 376, 560
BsmAI GTCTC 2 cut(s) 111, 800
BsmBI CGTCTC 1 cut(s) 800
BsnI GGCC 1 cut(s) 209
BsoBI CYCGRG 2 cut(s) 80, 797
Bsp1286I GDGCHC 2 cut(s) 45, 78
Bsp143I GATC 6 cut(s) 8, 214, 271, 781, 808, 959
BspACI CCGC 9 cut(s) 25, 38, 163, 259, 373, 638, 644, 650, 656
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 154
BspDI ATCGAT 1 cut(s) 123
BspHI TCATGA 1 cut(s) 943
BspLI GGNNCC 3 cut(s) 118, 319, 423
BspPI GGATC 1 cut(s) 3
BspT107I GGYRCC 1 cut(s) 317
BspTI CTTAAG 1 cut(s) 766
BsrDI GCAATG 2 cut(s) 164, 382
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 6 cut(s) 8, 214, 271, 781, 808, 959
Bst4CI ACNGT 1 cut(s) 580
Bst6I CTCTTC 2 cut(s) 966, 998
BstAFI CTTAAG 1 cut(s) 766
BstBAI YACGTR 1 cut(s) 540
BstC8I GCNNGC 1 cut(s) 696
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 2 cut(s) 616, 688
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 4 cut(s) 140, 195, 694, 816
BstKTI GATC 6 cut(s) 11, 217, 274, 784, 811, 962
BstMAI GTCTC 2 cut(s) 111, 800
BstMBI GATC 6 cut(s) 8, 214, 271, 781, 808, 959
BstMCI CGRYCG 2 cut(s) 286, 962
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 33
BstSFI CTRYAG 1 cut(s) 699
BstV1I GCAGC 1 cut(s) 895
BstV2I GAAGAC 1 cut(s) 609
BstX2I RGATCY 1 cut(s) 8
BstXI CCANNNNNNTGG 1 cut(s) 205
BstYI RGATCY 1 cut(s) 8
Bsu15I ATCGAT 1 cut(s) 123
BsuRI GGCC 1 cut(s) 209
BsuTUI ATCGAT 1 cut(s) 123
BtsCI GGATG 2 cut(s) 616, 688
BtsIMutI CAGTG 2 cut(s) 342, 900
Cac8I GCNNGC 1 cut(s) 696
CaiI CAGNNNCTG 1 cut(s) 103
CciI TCATGA 1 cut(s) 943
CfoI GCGC 4 cut(s) 140, 195, 694, 816
Cfr13I GGNCC 2 cut(s) 100, 445
ClaI ATCGAT 1 cut(s) 123
Csp6I GTAC 3 cut(s) 153, 310, 337
CviAII CATG 4 cut(s) 205, 479, 716, 944
CviQI GTAC 3 cut(s) 153, 310, 337
DdeI CTNAG 1 cut(s) 141
DpnI GATC 6 cut(s) 10, 216, 273, 783, 810, 961
DpnII GATC 6 cut(s) 8, 214, 271, 781, 808, 959
DraI TTTAAA 2 cut(s) 519, 547
DriI GACNNNNNGTC 1 cut(s) 457
EaeI YGGCCR 1 cut(s) 207
Eam1104I CTCTTC 2 cut(s) 966, 998
Eam1105I GACNNNNNGTC 1 cut(s) 457
EarI CTCTTC 2 cut(s) 966, 998
EciI GGCGGA 1 cut(s) 53
Ecl136II GAGCTC 2 cut(s) 43, 76
Eco24I GRGCYC 2 cut(s) 45, 78
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 2 cut(s) 100, 445
Eco47III AGCGCT 1 cut(s) 139
Eco53kI GAGCTC 2 cut(s) 43, 76
Eco57I CTGAAG 2 cut(s) 435, 716
Eco72I CACGTG 1 cut(s) 540
Eco88I CYCGRG 2 cut(s) 80, 797
EcoICRI GAGCTC 2 cut(s) 43, 76
EcoO109I RGGNCCY 2 cut(s) 100, 445
EcoRV GATATC 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 717
EcoT38I GRGCYC 2 cut(s) 45, 78
Esp3I CGTCTC 1 cut(s) 800
FaeI CATG 4 cut(s) 208, 482, 719, 947
FaiI YATR 9 cut(s) 206, 480, 570, 668, 701, 717, 934, 940, 945
FatI CATG 4 cut(s) 204, 478, 715, 943
FbaI TGATCA 1 cut(s) 781
Fnu4HI GCNGC 3 cut(s) 164, 259, 884
FokI GGATG 2 cut(s) 623, 695
FriOI GRGCYC 2 cut(s) 45, 78
Fsp4HI GCNGC 3 cut(s) 164, 259, 884
FspBI CTAG 2 cut(s) 390, 1075
GlaI GCGC 4 cut(s) 139, 194, 693, 815
GluI GCNGC 3 cut(s) 164, 259, 884
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 1 cut(s) 209
HapII CCGG 1 cut(s) 35
HhaI GCGC 4 cut(s) 140, 195, 694, 816
Hin1II CATG 4 cut(s) 208, 482, 719, 947
Hin6I GCGC 4 cut(s) 138, 193, 692, 814
HinP1I GCGC 4 cut(s) 138, 193, 692, 814
HinfI GANTC 3 cut(s) 360, 800, 947
HpaII CCGG 1 cut(s) 35
HphI GGTGA 4 cut(s) 82, 611, 988, 1046
Hpy166II GTNNAC 3 cut(s) 153, 235, 722
Hpy188III TCNNGA 3 cut(s) 779, 797, 944
Hpy8I GTNNAC 3 cut(s) 153, 235, 722
Hpy99I CGWCG 2 cut(s) 63, 326
HpyAV CCTTC 2 cut(s) 139, 590
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4IV ACGT 3 cut(s) 458, 539, 868
HpyCH4V TGCA 5 cut(s) 465, 686, 715, 883, 995
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 3 cut(s) 458, 539, 868
Hsp92II CATG 4 cut(s) 208, 482, 719, 947
HspAI GCGC 4 cut(s) 138, 193, 692, 814
Ksp22I TGATCA 1 cut(s) 781
Kzo9I GATC 6 cut(s) 8, 214, 271, 781, 808, 959
LmnI GCTCC 8 cut(s) 40, 48, 73, 81, 116, 276, 427, 891
Lsp1109I GCAGC 1 cut(s) 895
LweI GCATC 3 cut(s) 673, 679, 702
MaeI CTAG 2 cut(s) 390, 1075
MaeII ACGT 3 cut(s) 458, 539, 868
MaeIII GTNAC 2 cut(s) 801, 821
MalI GATC 6 cut(s) 10, 216, 273, 783, 810, 961
MboI GATC 6 cut(s) 8, 214, 271, 781, 808, 959
MboII GAAGA 5 cut(s) 569, 614, 722, 983, 1015
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 2 cut(s) 45, 78
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 4 cut(s) 326, 530, 774, 1059
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 1 cut(s) 809
MmeI TCCRAC 2 cut(s) 51, 420
Mox20I TGGCCA 1 cut(s) 209
Mph1103I ATGCAT 1 cut(s) 717
MroXI GAANNNNTTC 1 cut(s) 1007
MscI TGGCCA 1 cut(s) 209
MseI TTAA 4 cut(s) 518, 546, 767, 873
MslI CAYNNNNRTG 2 cut(s) 203, 611
Msp20I TGGCCA 1 cut(s) 209
MspCI CTTAAG 1 cut(s) 766
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 35
MssI GTTTAAAC 1 cut(s) 547
MwoI GCNNNNNNNGC 1 cut(s) 163
NciI CCSGG 1 cut(s) 35
NdeII GATC 6 cut(s) 8, 214, 271, 781, 808, 959
NlaIII CATG 4 cut(s) 208, 482, 719, 947
NlaIV GGNNCC 3 cut(s) 118, 319, 423
NmeAIII GCCGAG 1 cut(s) 88
NmuCI GTSAC 1 cut(s) 801
NsiI ATGCAT 1 cut(s) 717
OliI CACNNNNGTG 1 cut(s) 611
PaeR7I CTCGAG 1 cut(s) 797
PagI TCATGA 1 cut(s) 943
PcsI WCGNNNNNNNCGW 3 cut(s) 58, 120, 321
PdmI GAANNNNTTC 1 cut(s) 1007
PfeI GAWTC 2 cut(s) 360, 947
PflMI CCANNNNNTGG 1 cut(s) 560
PkrI GCNGC 3 cut(s) 165, 260, 885
Ple19I CGATCG 1 cut(s) 962
PleI GAGTC 1 cut(s) 808
PmaCI CACGTG 1 cut(s) 540
PmeI GTTTAAAC 1 cut(s) 547
PmlI CACGTG 1 cut(s) 540
PpsI GAGTC 1 cut(s) 808
Ppu21I YACGTR 1 cut(s) 540
PpuMI RGGWCCY 2 cut(s) 100, 445
Psp124BI GAGCTC 2 cut(s) 45, 78
Psp5II RGGWCCY 2 cut(s) 100, 445
PspCI CACGTG 1 cut(s) 540
PspN4I GGNNCC 3 cut(s) 118, 319, 423
PspPI GGNCC 2 cut(s) 100, 445
PspPPI RGGWCCY 2 cut(s) 100, 445
PstNI CAGNNNCTG 1 cut(s) 103
PsuI RGATCY 1 cut(s) 8
PvuI CGATCG 1 cut(s) 962
RsaI GTAC 3 cut(s) 154, 311, 338
RsaNI GTAC 3 cut(s) 153, 310, 337
RseI CAYNNNNRTG 2 cut(s) 203, 611
SacI GAGCTC 2 cut(s) 45, 78
SaqAI TTAA 4 cut(s) 518, 546, 767, 873
SatI GCNGC 3 cut(s) 164, 259, 884
Sau3AI GATC 6 cut(s) 8, 214, 271, 781, 808, 959
Sau96I GGNCC 2 cut(s) 100, 445
ScaI AGTACT 1 cut(s) 311
SchI GAGTC 1 cut(s) 809
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 2 cut(s) 45, 78
SfaNI GCATC 3 cut(s) 673, 679, 702
SfcI CTRYAG 1 cut(s) 699
Sfr274I CTCGAG 1 cut(s) 797
SinI GGWCC 2 cut(s) 100, 445
SlaI CTCGAG 1 cut(s) 797
SmiMI CAYNNNNRTG 2 cut(s) 203, 611
SmlI CTYRAG 3 cut(s) 332, 766, 797
SmoI CTYRAG 3 cut(s) 332, 766, 797
Sse9I AATT 4 cut(s) 326, 530, 774, 1059
SsiI CCGC 9 cut(s) 25, 38, 163, 259, 373, 638, 644, 650, 656
SspMI CTAG 2 cut(s) 390, 1075
SstI GAGCTC 2 cut(s) 45, 78
StyD4I CCNGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 580
TaiI ACGT 3 cut(s) 461, 542, 871
TaqI TCGA 9 cut(s) 52, 123, 201, 286, 591, 710, 798, 962, 1063
TaqII GACCGA 1 cut(s) 272
TasI AATT 4 cut(s) 326, 530, 774, 1059
TatI WGTACW 2 cut(s) 309, 336
TauI GCSGC 2 cut(s) 166, 261
TfiI GAWTC 2 cut(s) 360, 947
Tru1I TTAA 4 cut(s) 518, 546, 767, 873
Tru9I TTAA 4 cut(s) 518, 546, 767, 873
TscAI CASTG 2 cut(s) 349, 907
TseFI GTSAC 1 cut(s) 801
TseI GCWGC 1 cut(s) 883
Tsp45I GTSAC 1 cut(s) 801
TspDTI ATGAA 2 cut(s) 495, 1000
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 2 cut(s) 349, 907
Van91I CCANNNNNTGG 1 cut(s) 560
Vha464I CTTAAG 1 cut(s) 766
VpaK11BI GGWCC 2 cut(s) 100, 445
XapI RAATTY 1 cut(s) 774
XhoI CTCGAG 1 cut(s) 797
XmnI GAANNNNTTC 1 cut(s) 1007
XspI CTAG 2 cut(s) 390, 1075
ZrmI AGTACT 1 cut(s) 311
Zsp2I ATGCAT 1 cut(s) 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.