Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002164

Physical Location & Seq

Genomic Coordinates Reverse (-)

10300273 .. 10300575

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0116000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCTTCCTATGTACATTGGTACGACGATGGATGGTGAAAAATACTACGGTCCTGCTGTTAGAGCTGGTCCCATTGTTTGTTTTCGTTGTCACAAGCATGGTGACCATTGGGCTAGTACGTGCCCAGAAAATGCTTCTGCTTTGGAATCAAGGGTTACAGCTGCTGTCACTAGCAAGAATATATATGATGCTGTTGAGAGAACACAAACTGAACCGGTCAAGACAGAATCTGATCCTGTTGAGAGAACACAAGCTGAACCGGTCGAGGCCGAATCTGATCCTATCGAGAGAACAGAATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

100

Amino Acids

11.04

Weight (kDa)

4.84

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53430 AT1G53430 AT1G53440
fragaria_vesca	FvH4_3g17940
malus_domestica	MD03G1247100.v1.1 MD03G1248200.v1.1 MD03G1248300.v1.1 MD03G1249100.v1.1 MD03G1249200.v1.1 MD11G1267500.v1.1
prunus_persica	Prupe.4G158000_v2.0.a1 Prupe.4G158000_v2.0.a1
pyrus_communis	pycom03g19620 pycom03g19750 pycom06g03840 pycom11g23530
rosa_chinensis	RchiOBHm_Chr5g0029911 RchiOBHm_Chr5g0029981
rosa_laevigata	RLG00000033201 RLG00000033206
rosa_multiflora	Rmu_sc0003368.1_g000014 Rmu_sc0004542.1_g000020 Rmu_sc0021047.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050050
rosa_rugosa	Rorug05G0115300 Rorug05G0115400 Rorug05G0115500 Rorug05G0115600 Rorug05G0115700 Rorug05G0115800 Rorug05G0115900 Rorug05G0116000 Rorug05G0116100 Rorug05G0116200
rosa_samantha	Rh5AG208900 Rh5AG209100 Rh5BG207700 Rh5CG231100 Rh5CG231800 Rh5DG211900 Rh5DG212500
rosa_wichuraiana	Rw5G019010 Rw5G019050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	227, 272
AfaI	GTAC	3 cut(s)	14, 22, 118
AgeI	ACCGGT	2 cut(s)	214, 259
AluBI	AGCT	3 cut(s)	65, 161, 254
AluI	AGCT	3 cut(s)	65, 161, 254
AlwI	GGATC	2 cut(s)	227, 272
AlwNI	CAGNNNCTG	2 cut(s)	164, 230
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	161
AsiGI	ACCGGT	2 cut(s)	214, 259
AspS9I	GGNCC	2 cut(s)	50, 68
AsuHPI	GGTGA	2 cut(s)	47, 113
AvaII	GGWCC	2 cut(s)	50, 68
BaeGI	GKGCMC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	2 cut(s)	22, 26
BfaI	CTAG	2 cut(s)	114, 171
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme18I	GGWCC	2 cut(s)	50, 68
BmgT120I	GGNCC	2 cut(s)	50, 68
BmiI	GGNNCC	1 cut(s)	70
BmsI	GCATC	1 cut(s)	178
BsaAI	YACGTR	1 cut(s)	120
BsaWI	WCCGGW	2 cut(s)	214, 259
Bse118I	RCCGGY	2 cut(s)	214, 259
BseGI	GGATG	1 cut(s)	37
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	148
Bsh1285I	CGRYCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	269
BshTI	ACCGGT	2 cut(s)	214, 259
BsiEI	CGRYCG	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	215, 260
BslFI	GGGAC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	232, 277
BspANI	GGCC	1 cut(s)	269
BspLI	GGNNCC	1 cut(s)	70
BspPI	GGATC	2 cut(s)	227, 272
BsrFI	RCCGGY	2 cut(s)	214, 259
BsrGI	TGTACA	1 cut(s)	12
BssAI	RCCGGY	2 cut(s)	214, 259
BssMI	GATC	2 cut(s)	232, 277
Bst4CI	ACNGT	1 cut(s)	50
BstAUI	TGTACA	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	120
BstEII	GGTNACC	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	2 cut(s)	235, 280
BstMBI	GATC	2 cut(s)	232, 277
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstPI	GGTNACC	1 cut(s)	101
BstSLI	GKGCMC	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	37
CaiI	CAGNNNCTG	2 cut(s)	164, 230
Cfr10I	RCCGGY	2 cut(s)	214, 259
Cfr13I	GGNCC	2 cut(s)	50, 68
Csp6I	GTAC	3 cut(s)	13, 21, 117
CspAI	ACCGGT	2 cut(s)	214, 259
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	5 cut(s)	65, 113, 161, 254, 269
CviKI_1	RGCY	5 cut(s)	65, 113, 161, 254, 269
CviQI	GTAC	3 cut(s)	13, 21, 117
DpnI	GATC	2 cut(s)	234, 279
DpnII	GATC	2 cut(s)	232, 277
Eco47I	GGWCC	2 cut(s)	50, 68
Eco91I	GGTNACC	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	101
FaeI	CATG	1 cut(s)	101
FaiI	YATR	5 cut(s)	11, 99, 182, 184, 186
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	2 cut(s)	114, 171
GluI	GCNGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	2 cut(s)	215, 260
Hin1II	CATG	1 cut(s)	101
HinfI	GANTC	4 cut(s)	146, 227, 272, 296
HpaII	CCGG	2 cut(s)	215, 260
HphI	GGTGA	2 cut(s)	47, 113
Hpy188I	TCNGA	2 cut(s)	232, 277
Hpy188III	TCNNGA	3 cut(s)	220, 286, 300
Hpy99I	CGWCG	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	101
Kzo9I	GATC	2 cut(s)	232, 277
LpnPI	CCDG	6 cut(s)	51, 66, 138, 228, 249, 273
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	114, 171
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	4 cut(s)	89, 101, 154, 166
MalI	GATC	2 cut(s)	234, 279
MboI	GATC	2 cut(s)	232, 277
MhlI	GDGCHC	1 cut(s)	125
MnlI	CCTC	1 cut(s)	259
MslI	CAYNNNNRTG	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	2 cut(s)	215, 260
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	2 cut(s)	232, 277
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	1 cut(s)	70
NmuCI	GTSAC	3 cut(s)	89, 101, 166
PfeI	GAWTC	4 cut(s)	146, 227, 272, 296
PinAI	ACCGGT	2 cut(s)	214, 259
PkrI	GCNGC	1 cut(s)	163
Ppu21I	YACGTR	1 cut(s)	120
PspEI	GGTNACC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	2 cut(s)	50, 68
PstNI	CAGNNNCTG	2 cut(s)	164, 230
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	3 cut(s)	14, 22, 118
RsaNI	GTAC	3 cut(s)	13, 21, 117
RseI	CAYNNNNRTG	1 cut(s)	96
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	2 cut(s)	232, 277
Sau96I	GGNCC	2 cut(s)	50, 68
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	4 cut(s)	67, 122, 163, 256
SfaNI	GCATC	1 cut(s)	178
SinI	GGWCC	2 cut(s)	50, 68
SmiMI	CAYNNNNRTG	1 cut(s)	96
SspMI	CTAG	2 cut(s)	114, 171
TaaI	ACNGT	1 cut(s)	50
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	2 cut(s)	264, 285
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	4 cut(s)	146, 227, 272, 296
TseFI	GTSAC	3 cut(s)	89, 101, 166
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	3 cut(s)	89, 101, 166
VpaK11BI	GGWCC	2 cut(s)	50, 68
XspI	CTAG	2 cut(s)	114, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.