Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002164

Physical Location & Seq

Genomic Coordinates Forward (+)

24656971 .. 24665837

Gene Structure 8867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG208900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGGGTTTGTGATTTCGAACTCTAGGATTGGTTTGGTCTTTGCTTTTGGGTTTCTGGTGCTGATTTGCTTCACTGGGTTTGGGTCTCATGCCCAACTCATTCCTTTACAAGAAGTGAAAACTCTTGAAACGATATCCCAGAAACTCCAGAATTCTTTTTGGAACAACATCAGCCAAAGTTCTTGCCAAGATGGTGGATCAAGCTTTAATAAGAATATCACGGCCAATTTTCTAAGCAATGTCACTTGCGACTGTTCCTTCGCAAACAACACTTGCCATGTCACAAACATAGTGATGAAGGGTCTAAATTTAACTGGTATTCTACCTGAGGAATTTGGAAATCTTACTCATCTACAAGAACTTGATCTCACTCGTAACTACATCAATGGATCAATTCCTGCAAACATTTCTCGTGCCCCTCTTCAGGTTCTGTCTCTTTTAGGAAATCGACTAAGTGGTTCTATTCCAAAGGAAATTGGTGACATTGCTACTCTTACTCAGCTTGTGTTGGAAGATAATCAACTTGAAGGGCCTCTTCCTCAAAACCTTGGGAGTTTGAGTTCCTTGGAGCGACTCCTTCTTTCTGCGAACAACTTTACAGGAATAATTCCAGAATCATTTGGAAATCTAAAGAATTTAACCGATTTTAGGATAGATGGGAGCCGAATCTCAGGGAAAATACCTACTTTTATTGGAAACTGGACCAAACTTGACAGACTGAGGATATCCGATTTGAATGTATCAAATTTTAAGGTTGATATTGGTGGTGGGGGCCTATCTGCTGGAGCTATTGCTGGCATTTCCTTCGATATATGGGTTACTTGGGGGGCAAAGACCTTGAAGATAAAGGCCTATGTCCTACAAGAGCAAGGAAATATGTTAGAACTTGTGGATCCAGATCTTGGTTCAAACTACTCCAAAGAAGAGGCGATGACAATGCTTAACTTGGCGCTTTTATGCACCAATCCATCTCCCACTCTCAGACCACCCATGTCATCTGTTGTAAGCATGCTTGAAGGTAAAAGTCCGATTCAGGCACCGTTAATCAAGCGCGACACGATGGAGCAGGATGTGAGGTTCAAAGCCTTTGAGAGACTATCACAAGACAGCCAAACACATGTTTCAACTTTCTCGCAAGATAGTCATGTAAGAGGAACATCAATGGAAGGTCCATGGATTGATTCTTCCGTTTCTCTCGCTAGTAAAAATGAGTCCCATGAACATTCTTCAACAAGCACGCAACTCAAGGATCTGTATGATGTAAACTTACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

424

Amino Acids

46.29

Weight (kDa)

5.45

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	142 - 245	2.7e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53430 AT1G53430 AT1G53440
fragaria_vesca	FvH4_3g17940
malus_domestica	MD03G1247100.v1.1 MD03G1248200.v1.1 MD03G1248300.v1.1 MD03G1249100.v1.1 MD03G1249200.v1.1 MD11G1267500.v1.1
prunus_persica	Prupe.4G158000_v2.0.a1 Prupe.4G158000_v2.0.a1
pyrus_communis	pycom03g19620 pycom03g19750 pycom06g03840 pycom11g23530
rosa_chinensis	RchiOBHm_Chr5g0029911 RchiOBHm_Chr5g0029981
rosa_laevigata	RLG00000033201 RLG00000033206
rosa_multiflora	Rmu_sc0003368.1_g000014 Rmu_sc0004542.1_g000020 Rmu_sc0021047.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050050
rosa_rugosa	Rorug05G0115300 Rorug05G0115400 Rorug05G0115500 Rorug05G0115600 Rorug05G0115700 Rorug05G0115800 Rorug05G0115900 Rorug05G0116000 Rorug05G0116100 Rorug05G0116200
rosa_samantha	Rh5AG208900 Rh5AG209100 Rh5BG207700 Rh5CG231100 Rh5CG231800 Rh5DG211900 Rh5DG212500
rosa_wichuraiana	Rw5G019010 Rw5G019050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1036
AccB7I	CCANNNNNTGG	1 cut(s)	902
AccII	CGCG	1 cut(s)	1053
AclWI	GGATC	5 cut(s)	205, 397, 887, 900, 1257
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	5 cut(s)	151, 307, 332, 634, 745
AcuI	CTGAAG	1 cut(s)	407
AfiI	CCNNNNNNNGG	3 cut(s)	424, 648, 902
AflIII	ACRYGT	1 cut(s)	1117
AgsI	TTSAA	9 cut(s)	128, 527, 736, 841, 909, 1016, 1081, 1125, 1230
AloI	GAACNNNNNNTCC	4 cut(s)	544, 576, 1061, 1093
AluBI	AGCT	3 cut(s)	204, 502, 788
AluI	AGCT	3 cut(s)	204, 502, 788
Alw26I	GTCTC	3 cut(s)	90, 438, 1087
AlwI	GGATC	5 cut(s)	205, 397, 887, 900, 1257
AlwNI	CAGNNNCTG	1 cut(s)	430
AoxI	GGCC	4 cut(s)	222, 530, 772, 849
ApoI	RAATTY	5 cut(s)	151, 307, 332, 634, 745
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AspLEI	GCGC	2 cut(s)	952, 1053
AspS9I	GGNCC	4 cut(s)	530, 702, 772, 1169
AsuHPI	GGTGA	1 cut(s)	491
AsuII	TTCGAA	1 cut(s)	17
AvaII	GGWCC	2 cut(s)	702, 1169
AxyI	CCTNAGG	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	418
BamHI	GGATCC	1 cut(s)	892
BanI	GGYRCC	1 cut(s)	1036
BauI	CACGAG	1 cut(s)	411
BccI	CCATC	4 cut(s)	185, 650, 976, 1054
BceAI	ACGGC	1 cut(s)	237
BcgI	CGANNNNNNTGC	4 cut(s)	787, 821, 919, 953
BcoDI	GTCTC	3 cut(s)	90, 438, 1087
BfaI	CTAG	2 cut(s)	24, 1200
BfoI	RGCGCY	1 cut(s)	953
BglII	AGATCT	1 cut(s)	898
Bme18I	GGWCC	2 cut(s)	702, 1169
BmgT120I	GGNCC	4 cut(s)	530, 702, 772, 1169
BmiI	GGNNCC	4 cut(s)	662, 773, 894, 1038
BmrI	ACTGGG	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	84
BpmI	CTGGAG	2 cut(s)	131, 804
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	1229
BsaBI	GATNNNNATC	1 cut(s)	897
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	547, 564, 1172
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	3 cut(s)	424, 648, 902
Bse1I	ACTGG	3 cut(s)	79, 319, 704
Bse21I	CCTNAGG	1 cut(s)	327
Bse3DI	GCAATG	2 cut(s)	244, 483
Bse8I	GATNNNNATC	1 cut(s)	897
BseDI	CCNNGG	3 cut(s)	547, 564, 1172
BseGI	GGATG	1 cut(s)	1075
BseJI	GATNNNNATC	1 cut(s)	897
BseLI	CCNNNNNNNGG	3 cut(s)	424, 648, 902
BseMI	GCAATG	2 cut(s)	244, 483
BseMII	CTCAG	5 cut(s)	318, 512, 684, 710, 994
BseNI	ACTGG	3 cut(s)	79, 319, 704
BseSI	GKGCMC	1 cut(s)	418
Bsh1236I	CGCG	1 cut(s)	1053
BshFI	GGCC	4 cut(s)	224, 532, 774, 851
BshNI	GGYRCC	1 cut(s)	1036
BslFI	GGGAC	1 cut(s)	1198
BslI	CCNNNNNNNGG	3 cut(s)	424, 648, 902
BsmAI	GTCTC	3 cut(s)	90, 438, 1087
BsmFI	GGGAC	1 cut(s)	1198
BsnI	GGCC	4 cut(s)	224, 532, 774, 851
Bso31I	GGTCTC	1 cut(s)	90
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	6 cut(s)	197, 364, 389, 892, 898, 1249
Bsp19I	CCATGG	1 cut(s)	1172
BspANI	GGCC	4 cut(s)	224, 532, 774, 851
BspCNI	CTCAG	5 cut(s)	319, 511, 683, 711, 993
BspFNI	CGCG	1 cut(s)	1053
BspLI	GGNNCC	4 cut(s)	662, 773, 894, 1038
BspPI	GGATC	5 cut(s)	205, 397, 887, 900, 1257
BspT104I	TTCGAA	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	1036
BspTNI	GGTCTC	1 cut(s)	90
BsrDI	GCAATG	2 cut(s)	244, 483
BsrI	ACTGG	3 cut(s)	79, 319, 704
BssECI	CCNNGG	3 cut(s)	547, 564, 1172
BssMI	GATC	6 cut(s)	197, 364, 389, 892, 898, 1249
BssSI	CACGAG	1 cut(s)	411
BssT1I	CCWWGG	3 cut(s)	547, 564, 1172
Bst2BI	CACGAG	1 cut(s)	411
Bst4CI	ACNGT	3 cut(s)	254, 1041, 1272
Bst6I	CTCTTC	3 cut(s)	426, 540, 918
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	796, 1010, 1238
BstDEI	CTNAG	7 cut(s)	233, 327, 452, 498, 670, 719, 980
BstDSI	CCRYGG	1 cut(s)	1172
BstF5I	GGATG	1 cut(s)	1075
BstFNI	CGCG	1 cut(s)	1053
BstH2I	RGCGCY	1 cut(s)	953
BstHHI	GCGC	2 cut(s)	952, 1053
BstKTI	GATC	6 cut(s)	200, 367, 392, 895, 901, 1252
BstMAI	GTCTC	3 cut(s)	90, 438, 1087
BstMBI	GATC	6 cut(s)	197, 364, 389, 892, 898, 1249
BstNSI	RCATGY	2 cut(s)	1012, 1121
BstSLI	GKGCMC	1 cut(s)	418
BstUI	CGCG	1 cut(s)	1053
BstX2I	RGATCY	3 cut(s)	892, 898, 1249
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	3 cut(s)	892, 898, 1249
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	4 cut(s)	224, 532, 774, 851
BtgI	CCRYGG	1 cut(s)	1172
BtgZI	GCGATG	1 cut(s)	944
BtsCI	GGATG	1 cut(s)	1075
BtsIMutI	CAGTG	1 cut(s)	72
Cac8I	GCNNGC	3 cut(s)	796, 1010, 1238
CaiI	CAGNNNCTG	1 cut(s)	430
CfoI	GCGC	2 cut(s)	952, 1053
Cfr13I	GGNCC	4 cut(s)	530, 702, 772, 1169
CviAII	CATG	8 cut(s)	89, 278, 991, 1009, 1118, 1145, 1173, 1217
DdeI	CTNAG	7 cut(s)	233, 327, 452, 498, 670, 719, 980
DpnI	GATC	6 cut(s)	199, 366, 391, 894, 900, 1251
DpnII	GATC	6 cut(s)	197, 364, 389, 892, 898, 1249
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	3 cut(s)	426, 540, 918
EarI	CTCTTC	3 cut(s)	426, 540, 918
Eco130I	CCWWGG	3 cut(s)	547, 564, 1172
Eco147I	AGGCCT	1 cut(s)	851
Eco31I	GGTCTC	1 cut(s)	90
Eco32I	GATATC	2 cut(s)	135, 726
Eco47I	GGWCC	2 cut(s)	702, 1169
Eco57I	CTGAAG	1 cut(s)	407
Eco81I	CCTNAGG	1 cut(s)	327
EcoO109I	RGGNCCY	2 cut(s)	530, 772
EcoRI	GAATTC	1 cut(s)	151
EcoRV	GATATC	2 cut(s)	135, 726
EcoT14I	CCWWGG	3 cut(s)	547, 564, 1172
ErhI	CCWWGG	3 cut(s)	547, 564, 1172
FaeI	CATG	8 cut(s)	92, 281, 994, 1012, 1121, 1148, 1176, 1220
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	1 cut(s)	1198
FatI	CATG	8 cut(s)	88, 277, 990, 1008, 1117, 1144, 1172, 1216
FokI	GGATG	1 cut(s)	1082
FspBI	CTAG	2 cut(s)	24, 1200
GlaI	GCGC	2 cut(s)	951, 1052
GsuI	CTGGAG	2 cut(s)	131, 804
HaeII	RGCGCY	1 cut(s)	953
HaeIII	GGCC	4 cut(s)	224, 532, 774, 851
HhaI	GCGC	2 cut(s)	952, 1053
Hin1II	CATG	8 cut(s)	92, 281, 994, 1012, 1121, 1148, 1176, 1220
Hin6I	GCGC	2 cut(s)	950, 1051
HinP1I	GCGC	2 cut(s)	950, 1051
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	6 cut(s)	573, 614, 666, 1030, 1181, 1211
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	1 cut(s)	1264
Hpy188I	TCNGA	3 cut(s)	730, 983, 1029
Hpy188III	TCNNGA	4 cut(s)	125, 148, 611, 896
Hpy8I	GTNNAC	1 cut(s)	1264
HpyAV	CCTTC	7 cut(s)	268, 292, 521, 587, 814, 1010, 1160
HpyCH4III	ACNGT	3 cut(s)	254, 1041, 1272
HpyCH4V	TGCA	2 cut(s)	401, 960
HpyF3I	CTNAG	7 cut(s)	233, 327, 452, 498, 670, 719, 980
Hsp92II	CATG	8 cut(s)	92, 281, 994, 1012, 1121, 1148, 1176, 1220
HspAI	GCGC	2 cut(s)	950, 1051
Kzo9I	GATC	6 cut(s)	197, 364, 389, 892, 898, 1249
LmnI	GCTCC	4 cut(s)	568, 660, 785, 1063
MaeI	CTAG	2 cut(s)	24, 1200
MaeIII	GTNAC	5 cut(s)	241, 280, 374, 479, 817
MalI	GATC	6 cut(s)	199, 366, 391, 894, 900, 1251
MboI	GATC	6 cut(s)	197, 364, 389, 892, 898, 1249
MboII	GAAGA	7 cut(s)	413, 524, 527, 853, 935, 1176, 1218
MflI	RGATCY	3 cut(s)	892, 898, 1249
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	9 cut(s)	151, 226, 307, 332, 393, 474, 606, 634, 745
MlyI	GAGTC	2 cut(s)	567, 1220
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	8 cut(s)	322, 429, 543, 549, 714, 919, 1068, 1145
MseI	TTAA	6 cut(s)	207, 311, 638, 750, 942, 1043
MslI	CAYNNNNRTG	1 cut(s)	293
MvnI	CGCG	1 cut(s)	1053
NcoI	CCATGG	1 cut(s)	1172
NdeII	GATC	6 cut(s)	197, 364, 389, 892, 898, 1249
NlaIII	CATG	8 cut(s)	92, 281, 994, 1012, 1121, 1148, 1176, 1220
NlaIV	GGNNCC	4 cut(s)	662, 773, 894, 1038
NmuCI	GTSAC	3 cut(s)	241, 280, 479
NspI	RCATGY	2 cut(s)	1012, 1121
NspV	TTCGAA	1 cut(s)	17
PaeI	GCATGC	1 cut(s)	1012
PceI	AGGCCT	1 cut(s)	851
PciI	ACATGT	1 cut(s)	1117
PfeI	GAWTC	4 cut(s)	614, 666, 1030, 1181
PflMI	CCANNNNNTGG	1 cut(s)	902
PleI	GAGTC	2 cut(s)	567, 1219
PpsI	GAGTC	2 cut(s)	567, 1219
PscI	ACATGT	1 cut(s)	1117
PspN4I	GGNNCC	4 cut(s)	662, 773, 894, 1038
PspPI	GGNCC	4 cut(s)	530, 702, 772, 1169
PstNI	CAGNNNCTG	1 cut(s)	430
PsuI	RGATCY	3 cut(s)	892, 898, 1249
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	6 cut(s)	207, 311, 638, 750, 942, 1043
Sau3AI	GATC	6 cut(s)	197, 364, 389, 892, 898, 1249
Sau96I	GGNCC	4 cut(s)	530, 702, 772, 1169
SchI	GAGTC	2 cut(s)	567, 1220
SduI	GDGCHC	1 cut(s)	418
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	2 cut(s)	702, 1169
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	1 cut(s)	1244
SmoI	CTYRAG	1 cut(s)	1244
SphI	GCATGC	1 cut(s)	1012
Sse9I	AATT	9 cut(s)	151, 226, 307, 332, 393, 474, 606, 634, 745
SseBI	AGGCCT	1 cut(s)	851
SspMI	CTAG	2 cut(s)	24, 1200
StuI	AGGCCT	1 cut(s)	851
StyI	CCWWGG	3 cut(s)	547, 564, 1172
TaaI	ACNGT	3 cut(s)	254, 1041, 1272
TaqI	TCGA	3 cut(s)	17, 448, 807
TasI	AATT	9 cut(s)	151, 226, 307, 332, 393, 474, 606, 634, 745
TfiI	GAWTC	4 cut(s)	614, 666, 1030, 1181
Tru1I	TTAA	6 cut(s)	207, 311, 638, 750, 942, 1043
Tru9I	TTAA	6 cut(s)	207, 311, 638, 750, 942, 1043
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	3 cut(s)	241, 280, 479
Tsp45I	GTSAC	3 cut(s)	241, 280, 479
TspDTI	ATGAA	2 cut(s)	311, 1233
TspGWI	ACGGA	1 cut(s)	1177
TspRI	CASTG	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	902
VpaK11BI	GGWCC	2 cut(s)	702, 1169
XapI	RAATTY	5 cut(s)	151, 307, 332, 634, 745
XceI	RCATGY	2 cut(s)	1012, 1121
XspI	CTAG	2 cut(s)	24, 1200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.