Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002164

Physical Location & Seq

Genomic Coordinates Forward (+)

24061701 .. 24076066

Gene Structure 14366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG231800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGGGTTCGTGATTTCGAACTCTAGGATTGGTTTGGTCTTTGCTTTTGGGTTTCTGGTGCTGATTTGCTTCACTGGGTTTGGGTCTCATGCTCAACTCATTCCTCTACAAGAAGTGAAAACTCTTGAAACGATATCCCAGAAACTCCAGAATTCTTTTTGGAACATTAGCCAAAGTTCTTGCCAAGATGGTGGATCAAGCTTTAATAAGAATATCACGGACAAGATTCTAAGCAATGTCACTTGCGACTGTTCCTTCGCAAACAACACTTGCCATGTCACAAACATAGTGATGTACGGTCTAAATTTAACTGGTATTCTACCTGAGGAATTTGGAGATCTTACATATCTACAAGAACTTGATCTCACTCTTAACTACATCAGTGGATCCATTCCTACAGGCATTTCTCGCGCCCCTCTTAGGAATCTGTCTCTTACAGGAAATCGACTAAGTGGTTCTATTCCAAAGGAAATTGGTGACATTGCTACTCTTACTAAGCTTTTGTTGGAAGATAATCAACTTGAAGGGCCTCTTCCTCAAAACCTTGGGAGTTTGAGTTCCTTGAATAGACTCCTTCTTTCTGCGAATAACTTAACAGGAACAATTCCAGAATCATTTGGAAATCTAAAGAACTTAACCGATTTTAGGATAGATGGGAGCCGAATCTCAGGAAAAATACCTACTTTTATTGGAAACTGGACCAAGCTTGACAGACTGGATATGCAAGGCACGTCCATGGAAGGCCCCATTCCTTCCACCATATCTTTGCTGACAAAGTTAACTCAATTGAGCATATCTGATTTGAATGGATCAAGTATGCATTTTCCTAAATTGGAGGATTTGAAAATTTTGAAAACATTGATTCTGAGAAATTGCTCAATTACCGATTCTATCCCTGACTACATTGGAGATATGACAAATTTAAAGATATTGGACCTGAGCTTTAACAAGTTGACAGGTGAAGTTCCAACGACCCTTGAGAATCTTGTTGCTCTTGATTACATGTTTTTGACCAACAATTTACTGACTGGAGAAGTACCAAGCTGGATATTGAGCAACAAAAATAACTTTGATTTGTCTTACAACAATTTTAGCGGATCACCTACAGTTGGTTGTCAACACTTATCAGTGAATTTAATTTCTAGCTTTTCATCTTCACAAAGCCCGTGGTGCTTGCAGAAGGACCTCCCTTGTTCCACAAAAGCCAAATATTTTAAGGTTGATATTGGCCTATCTGCTGGAGCTATTGCTGGCATTTCCTTCGATATATGGGTTACTTGGGGGGCGAAGACCTTGAAGATAAAGGGCGACACGATGGAGCAGGATGCGAGGTTCAAAGCCTTTGAGAGACTATCACAAGACAGCCAAACACATGTTTCAACTCTCTCGCAAGATAGTCTTCATGTGTACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

471

Amino Acids

51.62

Weight (kDa)

5.46

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	224 - 318	1.5e-07	Leucine-rich repeat region
LRR_8	PF13855	284 - 342	5.5e-09	Leucine rich repeat
LRR_4	PF12799	284 - 319	2.7e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53430 AT1G53430 AT1G53440
fragaria_vesca	FvH4_3g17940
malus_domestica	MD03G1247100.v1.1 MD03G1248200.v1.1 MD03G1248300.v1.1 MD03G1249100.v1.1 MD03G1249200.v1.1 MD11G1267500.v1.1
prunus_persica	Prupe.4G158000_v2.0.a1 Prupe.4G158000_v2.0.a1
pyrus_communis	pycom03g19620 pycom03g19750 pycom06g03840 pycom11g23530
rosa_chinensis	RchiOBHm_Chr5g0029911 RchiOBHm_Chr5g0029981
rosa_laevigata	RLG00000033201 RLG00000033206
rosa_multiflora	Rmu_sc0003368.1_g000014 Rmu_sc0004542.1_g000020 Rmu_sc0021047.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050050
rosa_rugosa	Rorug05G0115300 Rorug05G0115400 Rorug05G0115500 Rorug05G0115600 Rorug05G0115700 Rorug05G0115800 Rorug05G0115900 Rorug05G0116000 Rorug05G0116100 Rorug05G0116200
rosa_samantha	Rh5AG208900 Rh5AG209100 Rh5BG207700 Rh5CG231100 Rh5CG231800 Rh5DG211900 Rh5DG212500
rosa_wichuraiana	Rw5G019010 Rw5G019050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	411
AciI	CCGC	1 cut(s)	1095
AclWI	GGATC	5 cut(s)	202, 381, 394, 817, 1105
AcsI	RAATTY	6 cut(s)	151, 304, 329, 846, 919, 1132
AfaI	GTAC	3 cut(s)	296, 1038, 1409
AfiI	CCNNNNNNNGG	3 cut(s)	420, 645, 1109
AflIII	ACRYGT	2 cut(s)	1002, 1372
AgsI	TTSAA	9 cut(s)	128, 524, 565, 805, 844, 853, 1297, 1336, 1380
AjiI	CACGTC	1 cut(s)	732
AloI	GAACNNNNNNTCC	4 cut(s)	541, 573, 1316, 1348
AluBI	AGCT	7 cut(s)	201, 499, 706, 942, 1044, 1146, 1244
AluI	AGCT	7 cut(s)	201, 499, 706, 942, 1044, 1146, 1244
Alw26I	GTCTC	3 cut(s)	90, 435, 1342
AlwI	GGATC	5 cut(s)	202, 381, 394, 817, 1105
AoxI	GGCC	3 cut(s)	527, 742, 1228
ApoI	RAATTY	6 cut(s)	151, 304, 329, 846, 919, 1132
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspLEI	GCGC	1 cut(s)	413
AspS9I	GGNCC	5 cut(s)	527, 699, 743, 934, 1183
AsuHPI	GGTGA	3 cut(s)	488, 971, 1092
AsuII	TTCGAA	1 cut(s)	17
AvaII	GGWCC	3 cut(s)	699, 934, 1183
AxyI	CCTNAGG	1 cut(s)	324
BamHI	GGATCC	1 cut(s)	386
BbsI	GAAGAC	2 cut(s)	1295, 1391
BccI	CCATC	3 cut(s)	182, 647, 1309
BcgI	CGANNNNNNTGC	2 cut(s)	1243, 1277
BcoDI	GTCTC	3 cut(s)	90, 435, 1342
BfaI	CTAG	2 cut(s)	24, 1143
BfmI	CTRYAG	2 cut(s)	396, 1104
BglII	AGATCT	1 cut(s)	337
Bme18I	GGWCC	3 cut(s)	699, 934, 1183
BmgBI	CACGTC	1 cut(s)	732
BmgT120I	GGNCC	5 cut(s)	527, 699, 743, 934, 1183
BmiI	GGNNCC	3 cut(s)	388, 659, 745
BmrI	ACTGGG	1 cut(s)	84
BmsI	GCATC	1 cut(s)	1315
BmuI	ACTGGG	1 cut(s)	84
BpiI	GAAGAC	2 cut(s)	1295, 1391
BpmI	CTGGAG	3 cut(s)	131, 1050, 1260
Bpu10I	CCTNAGC	1 cut(s)	938
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	998
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	3 cut(s)	544, 735, 1166
BsaXI	ACNNNNNCTCC	2 cut(s)	541, 571
Bsc4I	CCNNNNNNNGG	3 cut(s)	420, 645, 1109
Bse1I	ACTGG	5 cut(s)	79, 316, 701, 720, 1033
Bse21I	CCTNAGG	1 cut(s)	324
Bse3DI	GCAATG	2 cut(s)	241, 480
BseDI	CCNNGG	3 cut(s)	544, 735, 1166
BseGI	GGATG	1 cut(s)	1330
BseLI	CCNNNNNNNGG	3 cut(s)	420, 645, 1109
BseMI	GCAATG	2 cut(s)	241, 480
BseMII	CTCAG	4 cut(s)	315, 681, 857, 929
BseNI	ACTGG	5 cut(s)	79, 316, 701, 720, 1033
Bsh1236I	CGCG	1 cut(s)	411
BshFI	GGCC	3 cut(s)	529, 744, 1230
BslI	CCNNNNNNNGG	3 cut(s)	420, 645, 1109
BsmAI	GTCTC	3 cut(s)	90, 435, 1342
BsnI	GGCC	3 cut(s)	529, 744, 1230
Bso31I	GGTCTC	1 cut(s)	90
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1407I	TGTACA	1 cut(s)	1407
Bsp143I	GATC	6 cut(s)	194, 337, 361, 386, 809, 1097
Bsp19I	CCATGG	1 cut(s)	735
BspACI	CCGC	1 cut(s)	1095
BspANI	GGCC	3 cut(s)	529, 744, 1230
BspCNI	CTCAG	4 cut(s)	316, 680, 858, 930
BspFNI	CGCG	1 cut(s)	411
BspLI	GGNNCC	3 cut(s)	388, 659, 745
BspPI	GGATC	5 cut(s)	202, 381, 394, 817, 1105
BspT104I	TTCGAA	1 cut(s)	17
BspTNI	GGTCTC	1 cut(s)	90
BsrDI	GCAATG	2 cut(s)	241, 480
BsrGI	TGTACA	1 cut(s)	1407
BsrI	ACTGG	5 cut(s)	79, 316, 701, 720, 1033
BssECI	CCNNGG	3 cut(s)	544, 735, 1166
BssMI	GATC	6 cut(s)	194, 337, 361, 386, 809, 1097
BssT1I	CCWWGG	2 cut(s)	544, 735
Bst4CI	ACNGT	3 cut(s)	251, 299, 1108
Bst6I	CTCTTC	1 cut(s)	537
BstAUI	TGTACA	1 cut(s)	1407
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	1175, 1252
BstDEI	CTNAG	8 cut(s)	230, 324, 419, 449, 495, 667, 866, 938
BstDSI	CCRYGG	2 cut(s)	735, 1166
BstF5I	GGATG	1 cut(s)	1330
BstFNI	CGCG	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	6 cut(s)	197, 340, 364, 389, 812, 1100
BstMAI	GTCTC	3 cut(s)	90, 435, 1342
BstMBI	GATC	6 cut(s)	194, 337, 361, 386, 809, 1097
BstMWI	GCNNNNNNNGC	2 cut(s)	408, 1170
BstNSI	RCATGY	2 cut(s)	1006, 1376
BstSFI	CTRYAG	2 cut(s)	396, 1104
BstUI	CGCG	1 cut(s)	411
BstV2I	GAAGAC	2 cut(s)	1295, 1391
BstX2I	RGATCY	2 cut(s)	337, 386
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstYI	RGATCY	2 cut(s)	337, 386
Bsu36I	CCTNAGG	1 cut(s)	324
BsuRI	GGCC	3 cut(s)	529, 744, 1230
BtgI	CCRYGG	2 cut(s)	735, 1166
BtrI	CACGTC	1 cut(s)	732
BtsCI	GGATG	1 cut(s)	1330
BtsIMutI	CAGTG	3 cut(s)	72, 388, 1134
Cac8I	GCNNGC	2 cut(s)	1175, 1252
CfoI	GCGC	1 cut(s)	413
Cfr13I	GGNCC	5 cut(s)	527, 699, 743, 934, 1183
Csp6I	GTAC	3 cut(s)	295, 1037, 1408
CspCI	CAANNNNNGTGG	2 cut(s)	1148, 1183
CviAII	CATG	6 cut(s)	89, 275, 736, 1003, 1373, 1403
CviQI	GTAC	3 cut(s)	295, 1037, 1408
DdeI	CTNAG	8 cut(s)	230, 324, 419, 449, 495, 667, 866, 938
DpnI	GATC	6 cut(s)	196, 339, 363, 388, 811, 1099
DpnII	GATC	6 cut(s)	194, 337, 361, 386, 809, 1097
DraI	TTTAAA	1 cut(s)	924
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
Eco130I	CCWWGG	2 cut(s)	544, 735
Eco31I	GGTCTC	1 cut(s)	90
Eco32I	GATATC	1 cut(s)	135
Eco47I	GGWCC	3 cut(s)	699, 934, 1183
Eco81I	CCTNAGG	1 cut(s)	324
EcoO109I	RGGNCCY	3 cut(s)	527, 743, 1183
EcoRI	GAATTC	1 cut(s)	151
EcoRV	GATATC	1 cut(s)	135
EcoT14I	CCWWGG	2 cut(s)	544, 735
EcoT22I	ATGCAT	1 cut(s)	822
ErhI	CCWWGG	2 cut(s)	544, 735
FaeI	CATG	6 cut(s)	92, 278, 739, 1006, 1376, 1406
FalI	AAGNNNNNCTT	4 cut(s)	516, 548, 1383, 1415
FatI	CATG	6 cut(s)	88, 274, 735, 1002, 1372, 1402
FokI	GGATG	1 cut(s)	1337
FspBI	CTAG	2 cut(s)	24, 1143
GlaI	GCGC	1 cut(s)	412
GsuI	CTGGAG	3 cut(s)	131, 1050, 1260
HaeIII	GGCC	3 cut(s)	529, 744, 1230
HhaI	GCGC	1 cut(s)	413
Hin1II	CATG	6 cut(s)	92, 278, 739, 1006, 1376, 1406
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HincII	GTYRAC	3 cut(s)	780, 954, 1118
HindII	GTYRAC	3 cut(s)	780, 954, 1118
HindIII	AAGCTT	3 cut(s)	199, 497, 704
HinfI	GANTC	8 cut(s)	226, 424, 570, 611, 663, 862, 887, 982
HpaI	GTTAAC	1 cut(s)	780
HphI	GGTGA	3 cut(s)	488, 971, 1092
Hpy166II	GTNNAC	4 cut(s)	780, 954, 1118, 1408
Hpy188I	TCNGA	2 cut(s)	799, 867
Hpy188III	TCNNGA	6 cut(s)	10, 125, 148, 608, 669, 995
Hpy8I	GTNNAC	4 cut(s)	780, 954, 1118, 1408
HpyAV	CCTTC	7 cut(s)	265, 518, 584, 734, 762, 1174, 1270
HpyCH4III	ACNGT	3 cut(s)	251, 299, 1108
HpyCH4IV	ACGT	1 cut(s)	731
HpyCH4V	TGCA	3 cut(s)	724, 820, 1177
HpyF10VI	GCNNNNNNNGC	2 cut(s)	408, 1170
HpyF3I	CTNAG	8 cut(s)	230, 324, 419, 449, 495, 667, 866, 938
HpySE526I	ACGT	1 cut(s)	731
Hsp92II	CATG	6 cut(s)	92, 278, 739, 1006, 1376, 1406
HspAI	GCGC	1 cut(s)	411
KspAI	GTTAAC	1 cut(s)	780
Kzo9I	GATC	6 cut(s)	194, 337, 361, 386, 809, 1097
LmnI	GCTCC	3 cut(s)	657, 1241, 1318
LweI	GCATC	1 cut(s)	1315
MaeI	CTAG	2 cut(s)	24, 1143
MaeII	ACGT	1 cut(s)	731
MaeIII	GTNAC	4 cut(s)	238, 277, 476, 1273
MalI	GATC	6 cut(s)	196, 339, 363, 388, 811, 1099
MboI	GATC	6 cut(s)	194, 337, 361, 386, 809, 1097
MboII	GAAGA	6 cut(s)	521, 524, 1146, 1300, 1309, 1391
MfeI	CAATTG	1 cut(s)	785
MflI	RGATCY	2 cut(s)	337, 386
MlyI	GAGTC	1 cut(s)	564
MmeI	TCCRAC	2 cut(s)	486, 992
MnlI	CCTC	8 cut(s)	114, 319, 426, 540, 546, 829, 1196, 1323
Mph1103I	ATGCAT	1 cut(s)	822
MslI	CAYNNNNRTG	2 cut(s)	290, 734
MunI	CAATTG	1 cut(s)	785
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	2 cut(s)	408, 1170
NcoI	CCATGG	1 cut(s)	735
NdeII	GATC	6 cut(s)	194, 337, 361, 386, 809, 1097
NlaIII	CATG	6 cut(s)	92, 278, 739, 1006, 1376, 1406
NlaIV	GGNNCC	3 cut(s)	388, 659, 745
NmuCI	GTSAC	3 cut(s)	238, 277, 476
NsiI	ATGCAT	1 cut(s)	822
NspI	RCATGY	2 cut(s)	1006, 1376
NspV	TTCGAA	1 cut(s)	17
PciI	ACATGT	2 cut(s)	1002, 1372
PfeI	GAWTC	7 cut(s)	226, 424, 611, 663, 862, 887, 982
PleI	GAGTC	1 cut(s)	564
PpsI	GAGTC	1 cut(s)	564
PpuMI	RGGWCCY	1 cut(s)	1183
PscI	ACATGT	2 cut(s)	1002, 1372
Psp5II	RGGWCCY	1 cut(s)	1183
PspN4I	GGNNCC	3 cut(s)	388, 659, 745
PspPI	GGNCC	5 cut(s)	527, 699, 743, 934, 1183
PspPPI	RGGWCCY	1 cut(s)	1183
PsuI	RGATCY	2 cut(s)	337, 386
RsaI	GTAC	3 cut(s)	296, 1038, 1409
RsaNI	GTAC	3 cut(s)	295, 1037, 1408
RseI	CAYNNNNRTG	2 cut(s)	290, 734
Sau3AI	GATC	6 cut(s)	194, 337, 361, 386, 809, 1097
Sau96I	GGNCC	5 cut(s)	527, 699, 743, 934, 1183
SchI	GAGTC	1 cut(s)	564
SfaNI	GCATC	1 cut(s)	1315
SfcI	CTRYAG	2 cut(s)	396, 1104
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	3 cut(s)	699, 934, 1183
SmiMI	CAYNNNNRTG	2 cut(s)	290, 734
SmlI	CTYRAG	1 cut(s)	977
SmoI	CTYRAG	1 cut(s)	977
SsiI	CCGC	1 cut(s)	1095
SspI	AATATT	1 cut(s)	1211
SspMI	CTAG	2 cut(s)	24, 1143
StyI	CCWWGG	2 cut(s)	544, 735
TaaI	ACNGT	3 cut(s)	251, 299, 1108
TaiI	ACGT	1 cut(s)	734
TaqI	TCGA	3 cut(s)	17, 445, 1263
TatI	WGTACW	1 cut(s)	1407
TfiI	GAWTC	7 cut(s)	226, 424, 611, 663, 862, 887, 982
TscAI	CASTG	3 cut(s)	79, 388, 1134
TseFI	GTSAC	3 cut(s)	238, 277, 476
Tsp45I	GTSAC	3 cut(s)	238, 277, 476
TspDTI	ATGAA	2 cut(s)	1140, 1391
TspGWI	ACGGA	1 cut(s)	233
TspRI	CASTG	3 cut(s)	79, 388, 1134
VpaK11BI	GGWCC	3 cut(s)	699, 934, 1183
XapI	RAATTY	6 cut(s)	151, 304, 329, 846, 919, 1132
XceI	RCATGY	2 cut(s)	1006, 1376
XspI	CTAG	2 cut(s)	24, 1143
Zsp2I	ATGCAT	1 cut(s)	822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.