Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002164

Physical Location & Seq

Genomic Coordinates Forward (+)

23957735 .. 23966102

Gene Structure 8368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG207700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGGGTTTGTGATTTCGAACTCTAGGATTGGTTTGGTCTTTGCTTTTGGGTTTCTGGTGCTGATTTGCTTCACTGGGTTTGGGTCTCATGCCCAACTCATTCCTTTACAAGAAGTGAAAACTCTTGAAACGATATCCCAGAGACTCCAGAATTCTTTTTGGAACAACATCAGCCAAAGTTCTTGCCAAGATGGTGGATCAAGCTTTAATAAGAATATCACGGCCAATTTTCTAAGCAATGTCACTTGCGACTGTTCCTTCGCAAACAACACTTGCCATGTCACAAACATAGTGATGAAGGGTCTAAATTTAACTGGTATTCTACCTGAGGAATTTGGAAGTCTTACTCATCTACAAGAACTTAGGATAGATGGGAGCCGAATCTCAGGGAAAATACCTACTTTTATTGGAAACTGGACCAAACTTGACAGATTGGATATGCAAGGCACGTCCATGGAAGGCCCCATTCCTTCCACCATATCTTTGCTGACAAACTTAACTGAATTGAGGATATCCGATTTGAATGTATCAAGTATGCCTTTTCCTAATTTGGAGGGTTTGAAAATTTTGGAAAGAGTGATTCTGAGAAATTGCTCAATTACCGATTCTATCCCTGGCTACATTGGAGAGCTGACAAAATTAAAGGAATTGGACCTGAGCTTTAACAAGTTGAGAGGTGAAGTTCCAACGACCCTTGAGAATCTTGTTGCTCTTGATTACATGTTTTTGACCAACAATTTACTGACTGGAGAAGTACCAAGCTGGATATTGAGCAACAAAAACAACTTTGATTTGTCTTACAACAATTTTAGCGGATCACTTACAATTAGTTGTCAACAGTTACCAGTGAATTTAATTTCTAGCTTTTCATCTTCACAAAGCTCGTGGTGCTTGCAGAAGGACCTCCCTTGTTCCACAAAAGCCAAACACTATTCTTTGTTTATTAATTGTGGGGGGAGTCGGATGGAATTCAATGGTAATCAGTACGAAGAGGACTTGAGCACTGTGGGAACGTCAGACTTCATTTCCTCATCTGAGAAGTGGGGTTATAGCAGTACAGATTTTAAGGTTGATATTGATGGTGGGGGCCTATCTGCTGGAGCTATTGCTGGCATTTCCTTCGATATATGGGTTACTTGGGGGGCAAAGACCTTGAAGATAAAGGGTTCAAACACTCTCGAACAACCTGTCTCCTACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

400

Amino Acids

43.94

Weight (kDa)

5.25

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	110 - 227	3e-12	Leucine-rich repeat region
LRR_8	PF13855	190 - 248	2.7e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53430 AT1G53430 AT1G53440
fragaria_vesca	FvH4_3g17940
malus_domestica	MD03G1247100.v1.1 MD03G1248200.v1.1 MD03G1248300.v1.1 MD03G1249100.v1.1 MD03G1249200.v1.1 MD11G1267500.v1.1
prunus_persica	Prupe.4G158000_v2.0.a1 Prupe.4G158000_v2.0.a1
pyrus_communis	pycom03g19620 pycom03g19750 pycom06g03840 pycom11g23530
rosa_chinensis	RchiOBHm_Chr5g0029911 RchiOBHm_Chr5g0029981
rosa_laevigata	RLG00000033201 RLG00000033206
rosa_multiflora	Rmu_sc0003368.1_g000014 Rmu_sc0004542.1_g000020 Rmu_sc0021047.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050050
rosa_rugosa	Rorug05G0115300 Rorug05G0115400 Rorug05G0115500 Rorug05G0115600 Rorug05G0115700 Rorug05G0115800 Rorug05G0115900 Rorug05G0116000 Rorug05G0116100 Rorug05G0116200
rosa_samantha	Rh5AG208900 Rh5AG209100 Rh5BG207700 Rh5CG231100 Rh5CG231800 Rh5DG211900 Rh5DG212500
rosa_wichuraiana	Rw5G019010 Rw5G019050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	813
AclWI	GGATC	2 cut(s)	205, 823
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	6 cut(s)	151, 307, 332, 564, 850, 968
AfaI	GTAC	3 cut(s)	756, 986, 1057
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	6 cut(s)	128, 523, 562, 973, 1156, 1170
AjiI	CACGTC	1 cut(s)	450
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	7 cut(s)	204, 631, 660, 762, 864, 882, 1103
AluI	AGCT	7 cut(s)	204, 631, 660, 762, 864, 882, 1103
Alw21I	GWGCWC	1 cut(s)	1004
Alw26I	GTCTC	3 cut(s)	90, 136, 1195
AlwI	GGATC	2 cut(s)	205, 823
AoxI	GGCC	3 cut(s)	222, 460, 1087
ApoI	RAATTY	6 cut(s)	151, 307, 332, 564, 850, 968
ArsI	GACNNNNNNTTYG	3 cut(s)	242, 274, 1173
AseI	ATTAAT	1 cut(s)	945
AspS9I	GGNCC	5 cut(s)	417, 461, 652, 901, 1087
AsuHPI	GGTGA	1 cut(s)	689
AsuII	TTCGAA	1 cut(s)	17
AvaII	GGWCC	3 cut(s)	417, 652, 901
AxyI	CCTNAGG	1 cut(s)	327
BauI	CACGAG	1 cut(s)	883
Bbv12I	GWGCWC	1 cut(s)	1004
BccI	CCATC	4 cut(s)	185, 365, 958, 1073
BceAI	ACGGC	1 cut(s)	237
BcgI	CGANNNNNNTGC	2 cut(s)	1102, 1136
BciT130I	CCWGG	1 cut(s)	615
BcoDI	GTCTC	3 cut(s)	90, 136, 1195
BfaI	CTAG	2 cut(s)	24, 861
Bme1390I	CCNGG	1 cut(s)	615
Bme18I	GGWCC	3 cut(s)	417, 652, 901
BmgBI	CACGTC	1 cut(s)	450
BmgT120I	GGNCC	5 cut(s)	417, 461, 652, 901, 1087
BmiI	GGNNCC	3 cut(s)	377, 463, 1088
BmrFI	CCNGG	1 cut(s)	615
BmrI	ACTGGG	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	84
BpmI	CTGGAG	3 cut(s)	131, 768, 1119
Bpu10I	CCTNAGC	1 cut(s)	656
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	2 cut(s)	716, 1018
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	453, 613
Bse1I	ACTGG	5 cut(s)	79, 319, 419, 751, 845
Bse21I	CCTNAGG	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	615
BseDI	CCNNGG	2 cut(s)	453, 613
BseGI	GGATG	1 cut(s)	969
BseMI	GCAATG	1 cut(s)	244
BseMII	CTCAG	5 cut(s)	318, 399, 575, 647, 1026
BseNI	ACTGG	5 cut(s)	79, 319, 419, 751, 845
BshFI	GGCC	3 cut(s)	224, 462, 1089
BsiHKAI	GWGCWC	1 cut(s)	1004
BsmAI	GTCTC	3 cut(s)	90, 136, 1195
BsnI	GGCC	3 cut(s)	224, 462, 1089
Bso31I	GGTCTC	1 cut(s)	90
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	1004
Bsp143I	GATC	2 cut(s)	197, 815
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	1 cut(s)	813
BspANI	GGCC	3 cut(s)	224, 462, 1089
BspCNI	CTCAG	5 cut(s)	319, 398, 576, 648, 1027
BspLI	GGNNCC	3 cut(s)	377, 463, 1088
BspPI	GGATC	2 cut(s)	205, 823
BspT104I	TTCGAA	1 cut(s)	17
BspTNI	GGTCTC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	244
BsrI	ACTGG	5 cut(s)	79, 319, 419, 751, 845
BssECI	CCNNGG	2 cut(s)	453, 613
BssMI	GATC	2 cut(s)	197, 815
BssSI	CACGAG	1 cut(s)	883
BssT1I	CCWWGG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	883
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	3 cut(s)	254, 840, 1006
Bst6I	CTCTTC	1 cut(s)	984
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	893, 1111
BstDEI	CTNAG	7 cut(s)	233, 327, 362, 385, 584, 656, 1035
BstDSI	CCRYGG	1 cut(s)	453
BstF5I	GGATG	1 cut(s)	969
BstKTI	GATC	2 cut(s)	200, 818
BstMAI	GTCTC	3 cut(s)	90, 136, 1195
BstMBI	GATC	2 cut(s)	197, 815
BstMWI	GCNNNNNNNGC	1 cut(s)	888
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	1 cut(s)	613
BstXI	CCANNNNNNTGG	1 cut(s)	194
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	3 cut(s)	224, 462, 1089
BtgI	CCRYGG	1 cut(s)	453
BtrI	CACGTC	1 cut(s)	450
BtsCI	GGATG	1 cut(s)	969
BtsIMutI	CAGTG	3 cut(s)	72, 852, 1002
Cac8I	GCNNGC	2 cut(s)	893, 1111
Cfr13I	GGNCC	5 cut(s)	417, 461, 652, 901, 1087
Csp6I	GTAC	3 cut(s)	755, 985, 1056
CspCI	CAANNNNNGTGG	2 cut(s)	866, 901
CviAII	CATG	4 cut(s)	89, 278, 454, 721
CviQI	GTAC	3 cut(s)	755, 985, 1056
DdeI	CTNAG	7 cut(s)	233, 327, 362, 385, 584, 656, 1035
DpnI	GATC	2 cut(s)	199, 817
DpnII	GATC	2 cut(s)	197, 815
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	984
EarI	CTCTTC	1 cut(s)	984
Eco130I	CCWWGG	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	90
Eco32I	GATATC	2 cut(s)	135, 513
Eco47I	GGWCC	3 cut(s)	417, 652, 901
Eco81I	CCTNAGG	1 cut(s)	327
EcoO109I	RGGNCCY	3 cut(s)	461, 901, 1087
EcoRI	GAATTC	2 cut(s)	151, 968
EcoRII	CCWGG	1 cut(s)	613
EcoRV	GATATC	2 cut(s)	135, 513
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	4 cut(s)	92, 281, 457, 724
FalI	AAGNNNNNCTT	2 cut(s)	523, 555
FatI	CATG	4 cut(s)	88, 277, 453, 720
FokI	GGATG	1 cut(s)	976
FspBI	CTAG	2 cut(s)	24, 861
GsuI	CTGGAG	3 cut(s)	131, 768, 1119
HaeIII	GGCC	3 cut(s)	224, 462, 1089
Hin1II	CATG	4 cut(s)	92, 281, 457, 724
HincII	GTYRAC	1 cut(s)	836
HindII	GTYRAC	1 cut(s)	836
HindIII	AAGCTT	1 cut(s)	202
HinfI	GANTC	6 cut(s)	144, 381, 580, 605, 700, 958
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	1 cut(s)	836
Hpy188I	TCNGA	5 cut(s)	517, 585, 963, 1018, 1036
Hpy188III	TCNNGA	4 cut(s)	125, 148, 713, 1178
Hpy8I	GTNNAC	1 cut(s)	836
HpyAV	CCTTC	6 cut(s)	268, 292, 452, 480, 892, 1129
HpyCH4III	ACNGT	3 cut(s)	254, 840, 1006
HpyCH4IV	ACGT	2 cut(s)	449, 1013
HpyCH4V	TGCA	2 cut(s)	442, 895
HpyF10VI	GCNNNNNNNGC	1 cut(s)	888
HpyF3I	CTNAG	7 cut(s)	233, 327, 362, 385, 584, 656, 1035
HpySE526I	ACGT	2 cut(s)	449, 1013
Hsp92II	CATG	4 cut(s)	92, 281, 457, 724
Kzo9I	GATC	2 cut(s)	197, 815
LmnI	GCTCC	2 cut(s)	375, 1100
MaeI	CTAG	2 cut(s)	24, 861
MaeII	ACGT	2 cut(s)	449, 1013
MaeIII	GTNAC	4 cut(s)	241, 280, 840, 1132
MalI	GATC	2 cut(s)	199, 817
MboI	GATC	2 cut(s)	197, 815
MboII	GAAGA	3 cut(s)	864, 1001, 1168
MhlI	GDGCHC	1 cut(s)	1004
MlyI	GAGTC	2 cut(s)	138, 967
MmeI	TCCRAC	2 cut(s)	710, 941
MnlI	CCTC	7 cut(s)	322, 501, 547, 668, 914, 985, 1039
MseI	TTAA	8 cut(s)	207, 311, 497, 641, 663, 854, 945, 1065
MslI	CAYNNNNRTG	2 cut(s)	293, 452
MspR9I	CCNGG	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	615
MwoI	GCNNNNNNNGC	1 cut(s)	888
NcoI	CCATGG	1 cut(s)	453
NdeII	GATC	2 cut(s)	197, 815
NlaIII	CATG	4 cut(s)	92, 281, 457, 724
NlaIV	GGNNCC	3 cut(s)	377, 463, 1088
NmuCI	GTSAC	2 cut(s)	241, 280
NspI	RCATGY	1 cut(s)	724
NspV	TTCGAA	1 cut(s)	17
PciI	ACATGT	1 cut(s)	720
PfeI	GAWTC	4 cut(s)	381, 580, 605, 700
PleI	GAGTC	2 cut(s)	138, 966
PpsI	GAGTC	2 cut(s)	138, 966
PpuMI	RGGWCCY	1 cut(s)	901
PscI	ACATGT	1 cut(s)	720
PshBI	ATTAAT	1 cut(s)	945
Psp5II	RGGWCCY	1 cut(s)	901
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	3 cut(s)	377, 463, 1088
PspPI	GGNCC	5 cut(s)	417, 461, 652, 901, 1087
PspPPI	RGGWCCY	1 cut(s)	901
RsaI	GTAC	3 cut(s)	756, 986, 1057
RsaNI	GTAC	3 cut(s)	755, 985, 1056
RseI	CAYNNNNRTG	2 cut(s)	293, 452
SaqAI	TTAA	8 cut(s)	207, 311, 497, 641, 663, 854, 945, 1065
Sau3AI	GATC	2 cut(s)	197, 815
Sau96I	GGNCC	5 cut(s)	417, 461, 652, 901, 1087
SchI	GAGTC	2 cut(s)	138, 967
ScrFI	CCNGG	1 cut(s)	615
SduI	GDGCHC	1 cut(s)	1004
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	3 cut(s)	417, 652, 901
SmiMI	CAYNNNNRTG	2 cut(s)	293, 452
SmlI	CTYRAG	2 cut(s)	695, 997
SmoI	CTYRAG	2 cut(s)	695, 997
SsiI	CCGC	1 cut(s)	813
SspMI	CTAG	2 cut(s)	24, 861
StyD4I	CCNGG	1 cut(s)	613
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	3 cut(s)	254, 840, 1006
TaiI	ACGT	2 cut(s)	452, 1016
TaqI	TCGA	3 cut(s)	17, 1122, 1179
TatI	WGTACW	1 cut(s)	1055
TfiI	GAWTC	4 cut(s)	381, 580, 605, 700
Tru1I	TTAA	8 cut(s)	207, 311, 497, 641, 663, 854, 945, 1065
Tru9I	TTAA	8 cut(s)	207, 311, 497, 641, 663, 854, 945, 1065
TscAI	CASTG	3 cut(s)	79, 852, 1009
TseFI	GTSAC	2 cut(s)	241, 280
Tsp45I	GTSAC	2 cut(s)	241, 280
TspDTI	ATGAA	3 cut(s)	311, 858, 1012
TspRI	CASTG	3 cut(s)	79, 852, 1009
VpaK11BI	GGWCC	3 cut(s)	417, 652, 901
VspI	ATTAAT	1 cut(s)	945
XapI	RAATTY	6 cut(s)	151, 307, 332, 564, 850, 968
XceI	RCATGY	1 cut(s)	724
XspI	CTAG	2 cut(s)	24, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.