Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002164

Physical Location & Seq

Genomic Coordinates Forward (+)

24730408 .. 24739277

Gene Structure 8870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3045 bp

ATGGGGTTTGTGATTTCGAACTCTAGGATTGGTTTGGTCTTTGCTTTTGGGTTTCTGGTGCTGATTTGCTTCACTGGGTTTGGGTCTCATGCCCAACTCATTCCTTTACAAGAAGTGAAAACTCTTGAAACGATATCCCAGAAACTCCAGAATTCTTTTTGGAACAACATCAGCCAAAGTTCTTGCCAAGATGGTGGATCAAGCTTTAATAAGAATATCACGGCCAATTTTCTAAGCAATGTCACTTGCGACTGTTCCTTCGCAAACAACACTTGCCATGTCACAAACATAGTGATGAAGGGTCTAAATTTAACTGGTATTCTACCTGAGGAATTTGGAAATCTTACTCATCTACAAGAACTTGATCTCACTCGTAACTACATCAATGGATCAATTCCTGCAAACATTTCTCGTGCCCCTCTTCAGGTTCTGTCTCTTTTAGGAAATCGACTAAGTGGTTCTATTCCAAAGGAAATTGGTGACATTGCTACTCTTACTCAGCTTGTGTTGGAAGATAATCAACTTGAAGGGCCTCTTCCTCAAAACCTTGGGAGTTTGAGTTCCTTGGAGCGACTCCTTCTTTCTGCGAACAACTTTACAGGAATAATTCCAGAATCATTTGGAAATCTAAAGAATTTAACCGATTTTAGGATAGATGGGAGCCGAATCTCAGGGAAAATACCTACTTTTATTGGAAACTGGACCAAACTTGACAGATTGGATATGCAAGGCACGTCCATGGAAGGCCCCATTCCTTCCACCATATCTTTGCTGACAAACTTAACTGAATTGAGGATATCCGATTTGAATGTATCAAGTATGCCTTTTCCTAATTTGGAGGATTTGAAAATTTTGGAAAGAGTGATTCTGAGAAATTGCTCAATTACCGATTCTATCCCTGGCTACATTGGAGAGCTGACAAAATTAAAGGAATTGGACCTGAGCTTTAACAAGTTGAGAGGTGAAGTTCCAACGACCCTTGAGAATCTTGTTGCTCTTGATTACATGTTTTTGACCAACAATTTACTGACTGGAGAAGTACCAAGCTGGATATTGAGCAACAAAAACAACTTTGATTTGTCTTACAACAATTTTAGCGGATCACTTACAATTAGTTGTCAACAGTTACCAGTGAATTTAATTTCTAGCTTTTCATCTTCACAAAGCTCGTGGTGCTTGCAGAAGGACCTCCCTTGTTCCACAAAAGCCAAACACTATTCTTTGTTTATTAATTGTGGGGGGAGTCGGATGGAATTCAATGGTAATCAGTACGAAGAGGACTTGAGCACTGTGGGATCGTCAGACTTCATTTCCTCATCTGAGAAGTGGGGTTATAGCAGTACAGGTGTTTACATGGGGAATGATGATGCAGATTATACAGCAACAAACACATTGCCTCTTAATGTTAATGGTCCAGAATTTTATCAAACTGCCCGCCTTTCCCCACTCTCACTCAAGTATTACGGCCTCTGCATGCTTAAGGGTAGTTACAAAGTGCAGCTCCACTTTGCTGAAATAATGTATTCAGATAATGACACATTCACTGGCCTCGGGAAGCGCATATTTGATGTGTCAATTCAAGGAAATTTGGTTTTAAAGGATTTCAATATTATGAAGGAAGCAGGAGGTGCTGGTAAAGACATCGTCAAAGAATTTAATGTCCTTGTTAATGGTAGCACTCTAGAAATCCACTTATACTGGAAAGGAAAAGGAACTACTGCAATACCTGATAGGGGTGTCTATGGACCTCTTATATCTGCAATTACTGTGACACCAAATTTTAAGGTTGATATTGGTGGTGGGGGCCTATCTGCTGGAGCTATTGCTGGCATTGTAGTAGCATCATGTGTGTTGATTGTATTGATTTTGGCAGTCCTTCGATATATGGGTTACTTGGGGGGCAAAGACCTTGAAGATAAAGAACTGCGTGGGCTAGAACTACAAACAGGTTATTTCACCTTACGACAAATTAAAGCTGCCACTGGTAACTTTGATCCTTCAAATAAGATAGGTGAAGGAGGTTTTGGGCCTGTTTACAAGGGGGTACTACCAGATGGTGCTGTAATTGCTGTTAAGCAGCTCTCATCTAAATCAAAGCAAGGGAACCGTGAATTTGTTAATGAGATAGGCATGATATCTGCTTTGCAACACCCAAATCTCGTGAAGCTTTTCGGTTGCTGTATCGAAGGAAACCAGTTATTGCTTATATATGAATACATGGAAAACAATAGTCTTGCGCGTGCACTTTTTGGTCGTGAGGAACAACGGCTACACTTGGACTGGAAAACAAGAAAGAAGATATGCATGGGGATAGCAAGAGGGTTGGCCTATCTTCATGAAGAGTCAAGGTTGAAAATTGTTCACAGGGATATAAAGGCAACTAATGTCCTGCTTGATAAGGATCTGAATGCCAAAATATCTGATTTTGGTTTAGCTAAGCTGGATGAAGAAGAGAACACACATATCAGCACTCGAATAGCTGGAACAATAGGCTATATGGCACCTGAATACGCAATGAGGGGATACTTGACTGACAAAGCAGATGTGTATAGTTTTGGAATTGTTGCCTTAGAAATAGTCAGTGGAAAGAGCAACACAAATTACAGACCAAAGGAGGAGTACGTGTATCTCCTTGACGGGGCCTATGTCCTACAAGAGCAAGGAAATATGTTAGAACTTGTGGATCCAGATCTTGGTTCAAACTACTCCAAAGAAGAGGCGATGACAATGCTTAACTTGGCGCTTTTATGCACCAATCCATCTCCCACTCTCAGACCACCCATGTCATCTGTCGTAAGCATGCTTGAAGGTAAAAGTCCGATTCAGGCACCGTTAATCAAGCGCGACACGATGGAGCAGGATGCGAGGTTCAAAGCCTTTGAGAGACTATCACAAGACAGCCAAACACATGTTTCAACTTTCTCGCAAGATAGTCATGTAAGAGGAACATCAATGGAAGGTCCATGGATTGATTCTTCCGTTTCTCTCGCTAGTAAAAATGAGTCCCATGAACATTCTTCAACAAGCACGCAACTCAAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

1014

Amino Acids

111.51

Weight (kDa)

5.53

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	208 - 321	8.3e-09	Leucine-rich repeat region
LRR_8	PF13855	285 - 343	7.3e-07	Leucine rich repeat
Malectin	PF11721	407 - 588	2.4e-39	Malectin domain
Pkinase	PF00069	667 - 919	4.9e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	668 - 934	1.1e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53430 AT1G53430 AT1G53440
fragaria_vesca	FvH4_3g17940
malus_domestica	MD03G1247100.v1.1 MD03G1248200.v1.1 MD03G1248300.v1.1 MD03G1249100.v1.1 MD03G1249200.v1.1 MD11G1267500.v1.1
prunus_persica	Prupe.4G158000_v2.0.a1 Prupe.4G158000_v2.0.a1
pyrus_communis	pycom03g19620 pycom03g19750 pycom06g03840 pycom11g23530
rosa_chinensis	RchiOBHm_Chr5g0029911 RchiOBHm_Chr5g0029981
rosa_laevigata	RLG00000033201 RLG00000033206
rosa_multiflora	Rmu_sc0003368.1_g000014 Rmu_sc0004542.1_g000020 Rmu_sc0021047.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050050
rosa_rugosa	Rorug05G0115300 Rorug05G0115400 Rorug05G0115500 Rorug05G0115600 Rorug05G0115700 Rorug05G0115800 Rorug05G0115900 Rorug05G0116000 Rorug05G0116100 Rorug05G0116200
rosa_samantha	Rh5AG208900 Rh5AG209100 Rh5BG207700 Rh5CG231100 Rh5CG231800 Rh5DG211900 Rh5DG212500
rosa_wichuraiana	Rw5G019010 Rw5G019050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	2500, 2827
AccB7I	CCANNNNNTGG	1 cut(s)	2693
AccII	CGCG	2 cut(s)	2239, 2844
AciI	CCGC	2 cut(s)	1098, 1435
AclWI	GGATC	8 cut(s)	205, 397, 1108, 1303, 1988, 2409, 2678, 2691
AcoI	YGGCCR	1 cut(s)	222
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	5 cut(s)	1041, 1271, 1342, 2046, 2621
AfiI	CCNNNNNNNGG	5 cut(s)	424, 648, 1733, 2638, 2693
AflII	CTTAAG	1 cut(s)	1478
AflIII	ACRYGT	3 cut(s)	1005, 2622, 2908
AjiI	CACGTC	1 cut(s)	735
AjnI	CCWGG	1 cut(s)	898
AjuI	GAANNNNNNNTTGG	2 cut(s)	2007, 2039
AloI	GAACNNNNNNTCC	4 cut(s)	544, 576, 2852, 2884
Alw21I	GWGCWC	2 cut(s)	1289, 2245
Alw26I	GTCTC	3 cut(s)	90, 438, 2878
Alw44I	GTGCAC	1 cut(s)	2241
AlwI	GGATC	8 cut(s)	205, 397, 1108, 1303, 1988, 2409, 2678, 2691
AlwNI	CAGNNNCTG	1 cut(s)	430
Ama87I	CYCGRG	1 cut(s)	1550
AoxI	GGCC	9 cut(s)	222, 530, 745, 1465, 1546, 1804, 2027, 2325, 2640
ApaLI	GTGCAC	1 cut(s)	2241
ApeKI	GCWGC	3 cut(s)	1498, 1976, 2077
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AseI	ATTAAT	1 cut(s)	1230
Asp700I	GAANNNNTTC	1 cut(s)	2168
AspLEI	GCGC	4 cut(s)	1560, 2239, 2743, 2844
AsuHPI	GGTGA	4 cut(s)	491, 974, 1948, 2024
AsuII	TTCGAA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	1550
AvaII	GGWCC	6 cut(s)	702, 937, 1186, 1412, 1745, 2960
AxyI	CCTNAGG	1 cut(s)	327
BaeGI	GKGCMC	2 cut(s)	418, 2245
BamHI	GGATCC	1 cut(s)	2683
BanI	GGYRCC	2 cut(s)	2500, 2827
BauI	CACGAG	3 cut(s)	411, 1168, 2159
Bbv12I	GWGCWC	2 cut(s)	1289, 2245
BbvI	GCAGC	3 cut(s)	1510, 1963, 2089
BccI	CCATC	6 cut(s)	185, 650, 1243, 2048, 2767, 2845
BceAI	ACGGC	3 cut(s)	237, 1480, 2282
BcgI	CGANNNNNNTGC	2 cut(s)	2710, 2744
BciT130I	CCWGG	1 cut(s)	900
BciVI	GTATCC	1 cut(s)	2516
BcoDI	GTCTC	3 cut(s)	90, 438, 2878
BfaI	CTAG	5 cut(s)	24, 1146, 1682, 1934, 2991
BfoI	RGCGCY	1 cut(s)	2744
BfrI	CTTAAG	1 cut(s)	1478
BfuI	GTATCC	1 cut(s)	2516
BglII	AGATCT	1 cut(s)	2689
BisI	GCNGC	3 cut(s)	1499, 1977, 2078
BlpI	GCTNAGC	1 cut(s)	2436
BlsI	GCNGC	3 cut(s)	1500, 1978, 2079
Bme1390I	CCNGG	1 cut(s)	900
Bme18I	GGWCC	6 cut(s)	702, 937, 1186, 1412, 1745, 2960
BmeT110I	CYCGRG	1 cut(s)	1550
BmgBI	CACGTC	1 cut(s)	735
BmiI	GGNNCC	8 cut(s)	662, 748, 1805, 2105, 2502, 2641, 2685, 2829
BmrFI	CCNGG	1 cut(s)	900
BmrI	ACTGGG	1 cut(s)	84
BmsI	GCATC	3 cut(s)	1357, 1850, 2851
BmuI	ACTGGG	1 cut(s)	84
BpmI	CTGGAG	3 cut(s)	131, 1053, 1836
Bpu10I	CCTNAGC	1 cut(s)	941
Bpu1102I	GCTNAGC	1 cut(s)	2436
Bpu14I	TTCGAA	1 cut(s)	17
BpuEI	CTTGAG	4 cut(s)	1001, 1303, 1439, 3020
BsaAI	YACGTR	1 cut(s)	2623
BsaBI	GATNNNNATC	2 cut(s)	2400, 2688
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	6 cut(s)	547, 564, 738, 898, 1549, 2963
BsaXI	ACNNNNNCTCC	4 cut(s)	544, 574, 2609, 2639
Bsc4I	CCNNNNNNNGG	5 cut(s)	424, 648, 1733, 2638, 2693
Bse21I	CCTNAGG	1 cut(s)	327
Bse3DI	GCAATG	4 cut(s)	244, 483, 1391, 2520
Bse8I	GATNNNNATC	2 cut(s)	2400, 2688
BseBI	CCWGG	1 cut(s)	900
BseDI	CCNNGG	6 cut(s)	547, 564, 738, 898, 1549, 2963
BseGI	GGATG	3 cut(s)	1254, 2449, 2866
BseJI	GATNNNNATC	2 cut(s)	2400, 2688
BseLI	CCNNNNNNNGG	5 cut(s)	424, 648, 1733, 2638, 2693
BseMI	GCAATG	4 cut(s)	244, 483, 1391, 2520
BseMII	CTCAG	7 cut(s)	318, 512, 684, 860, 932, 1311, 2785
BseRI	GAGGAG	1 cut(s)	2630
BseSI	GKGCMC	2 cut(s)	418, 2245
BseXI	GCAGC	3 cut(s)	1510, 1963, 2089
BsgI	GTGCAG	1 cut(s)	1517
Bsh1236I	CGCG	2 cut(s)	2239, 2844
BshFI	GGCC	9 cut(s)	224, 532, 747, 1467, 1548, 1806, 2029, 2327, 2642
BshNI	GGYRCC	2 cut(s)	2500, 2827
BsiHKAI	GWGCWC	2 cut(s)	1289, 2245
BsiHKCI	CYCGRG	1 cut(s)	1550
BslFI	GGGAC	1 cut(s)	2989
BslI	CCNNNNNNNGG	5 cut(s)	424, 648, 1733, 2638, 2693
BsmAI	GTCTC	3 cut(s)	90, 438, 2878
BsmFI	GGGAC	1 cut(s)	2989
BsmI	GAATGC	1 cut(s)	2413
BsnI	GGCC	9 cut(s)	224, 532, 747, 1467, 1548, 1806, 2029, 2327, 2642
Bso31I	GGTCTC	1 cut(s)	90
BsoBI	CYCGRG	1 cut(s)	1550
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	3 cut(s)	418, 1289, 2245
Bsp143I	GATC	9 cut(s)	197, 364, 389, 1100, 1295, 1993, 2401, 2683, 2689
Bsp1720I	GCTNAGC	1 cut(s)	2436
Bsp19I	CCATGG	2 cut(s)	738, 2963
BspACI	CCGC	2 cut(s)	1098, 1435
BspANI	GGCC	9 cut(s)	224, 532, 747, 1467, 1548, 1806, 2029, 2327, 2642
BspCNI	CTCAG	7 cut(s)	319, 511, 683, 861, 933, 1312, 2784
BspFNI	CGCG	2 cut(s)	2239, 2844
BspHI	TCATGA	1 cut(s)	2335
BspLI	GGNNCC	8 cut(s)	662, 748, 1805, 2105, 2502, 2641, 2685, 2829
BspPI	GGATC	8 cut(s)	205, 397, 1108, 1303, 1988, 2409, 2678, 2691
BspT104I	TTCGAA	1 cut(s)	17
BspT107I	GGYRCC	2 cut(s)	2500, 2827
BspTI	CTTAAG	1 cut(s)	1478
BspTNI	GGTCTC	1 cut(s)	90
BsrDI	GCAATG	4 cut(s)	244, 483, 1391, 2520
BssECI	CCNNGG	6 cut(s)	547, 564, 738, 898, 1549, 2963
BssMI	GATC	9 cut(s)	197, 364, 389, 1100, 1295, 1993, 2401, 2683, 2689
BssSI	CACGAG	3 cut(s)	411, 1168, 2159
BssT1I	CCWWGG	4 cut(s)	547, 564, 738, 2963
Bst2BI	CACGAG	3 cut(s)	411, 1168, 2159
Bst2UI	CCWGG	1 cut(s)	900
Bst4CI	ACNGT	6 cut(s)	254, 1125, 1291, 1768, 2108, 2832
Bst6I	CTCTTC	6 cut(s)	426, 540, 1269, 2334, 2445, 2709
BstAFI	CTTAAG	1 cut(s)	1478
BstAPI	GCANNNNNTGC	1 cut(s)	1628
BstBAI	YACGTR	1 cut(s)	2623
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	7 cut(s)	1178, 1435, 1475, 1828, 2241, 2801, 3029
BstDSI	CCRYGG	2 cut(s)	738, 2963
BstF5I	GGATG	3 cut(s)	1254, 2449, 2866
BstFNI	CGCG	2 cut(s)	2239, 2844
BstH2I	RGCGCY	1 cut(s)	2744
BstHHI	GCGC	4 cut(s)	1560, 2239, 2743, 2844
BstKTI	GATC	9 cut(s)	200, 367, 392, 1103, 1298, 1996, 2404, 2686, 2692
BstMAI	GTCTC	3 cut(s)	90, 438, 2878
BstMBI	GATC	9 cut(s)	197, 364, 389, 1100, 1295, 1993, 2401, 2683, 2689
BstMWI	GCNNNNNNNGC	3 cut(s)	1173, 1628, 2066
BstNI	CCWGG	1 cut(s)	900
BstNSI	RCATGY	4 cut(s)	1009, 1477, 2803, 2912
BstSCI	CCNGG	1 cut(s)	898
BstSLI	GKGCMC	2 cut(s)	418, 2245
BstUI	CGCG	2 cut(s)	2239, 2844
BstV1I	GCAGC	3 cut(s)	1510, 1963, 2089
BstX2I	RGATCY	3 cut(s)	2401, 2683, 2689
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	3 cut(s)	2401, 2683, 2689
Bsu36I	CCTNAGG	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	2516
BsuRI	GGCC	9 cut(s)	224, 532, 747, 1467, 1548, 1806, 2029, 2327, 2642
BtgI	CCRYGG	2 cut(s)	738, 2963
BtgZI	GCGATG	1 cut(s)	2735
BtrI	CACGTC	1 cut(s)	735
BtsCI	GGATG	3 cut(s)	1254, 2449, 2866
BtsIMutI	CAGTG	6 cut(s)	72, 1137, 1287, 1542, 1980, 2587
Cac8I	GCNNGC	7 cut(s)	1178, 1435, 1475, 1828, 2241, 2801, 3029
CaiI	CAGNNNCTG	1 cut(s)	430
CciI	TCATGA	1 cut(s)	2335
CfoI	GCGC	4 cut(s)	1560, 2239, 2743, 2844
Csp6I	GTAC	5 cut(s)	1040, 1270, 1341, 2045, 2620
CspCI	CAANNNNNGTGG	2 cut(s)	1151, 1186
CviQI	GTAC	5 cut(s)	1040, 1270, 1341, 2045, 2620
DpnI	GATC	9 cut(s)	199, 366, 391, 1102, 1297, 1995, 2403, 2685, 2691
DpnII	GATC	9 cut(s)	197, 364, 389, 1100, 1295, 1993, 2401, 2683, 2689
DraI	TTTAAA	1 cut(s)	1596
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	6 cut(s)	426, 540, 1269, 2334, 2445, 2709
EarI	CTCTTC	6 cut(s)	426, 540, 1269, 2334, 2445, 2709
Eco130I	CCWWGG	4 cut(s)	547, 564, 738, 2963
Eco31I	GGTCTC	1 cut(s)	90
Eco32I	GATATC	3 cut(s)	135, 798, 2136
Eco47I	GGWCC	6 cut(s)	702, 937, 1186, 1412, 1745, 2960
Eco57I	CTGAAG	1 cut(s)	407
Eco81I	CCTNAGG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	1550
EcoO109I	RGGNCCY	5 cut(s)	530, 746, 1186, 1804, 2640
EcoRI	GAATTC	2 cut(s)	151, 1253
EcoRII	CCWGG	1 cut(s)	898
EcoRV	GATATC	3 cut(s)	135, 798, 2136
EcoT14I	CCWWGG	4 cut(s)	547, 564, 738, 2963
EcoT22I	ATGCAT	1 cut(s)	2306
ErhI	CCWWGG	4 cut(s)	547, 564, 738, 2963
FalI	AAGNNNNNCTT	4 cut(s)	519, 551, 808, 840
FaqI	GGGAC	1 cut(s)	2989
FauI	CCCGC	1 cut(s)	1442
Fnu4HI	GCNGC	3 cut(s)	1499, 1977, 2078
FokI	GGATG	3 cut(s)	1261, 2456, 2873
Fsp4HI	GCNGC	3 cut(s)	1499, 1977, 2078
FspBI	CTAG	5 cut(s)	24, 1146, 1682, 1934, 2991
GlaI	GCGC	4 cut(s)	1559, 2238, 2742, 2843
GluI	GCNGC	3 cut(s)	1499, 1977, 2078
GsuI	CTGGAG	3 cut(s)	131, 1053, 1836
HaeII	RGCGCY	1 cut(s)	2744
HaeIII	GGCC	9 cut(s)	224, 532, 747, 1467, 1548, 1806, 2029, 2327, 2642
HhaI	GCGC	4 cut(s)	1560, 2239, 2743, 2844
Hin6I	GCGC	4 cut(s)	1558, 2237, 2741, 2842
HinP1I	GCGC	4 cut(s)	1558, 2237, 2741, 2842
HincII	GTYRAC	1 cut(s)	1121
HindII	GTYRAC	1 cut(s)	1121
HindIII	AAGCTT	2 cut(s)	202, 2165
HphI	GGTGA	4 cut(s)	491, 974, 1948, 2024
Hpy166II	GTNNAC	5 cut(s)	1121, 1351, 2035, 2243, 2362
Hpy8I	GTNNAC	5 cut(s)	1121, 1351, 2035, 2243, 2362
HpyCH4III	ACNGT	6 cut(s)	254, 1125, 1291, 1768, 2108, 2832
HpyCH4IV	ACGT	2 cut(s)	734, 2622
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1173, 1628, 2066
HpySE526I	ACGT	2 cut(s)	734, 2622
HspAI	GCGC	4 cut(s)	1558, 2237, 2741, 2842
Kzo9I	GATC	9 cut(s)	197, 364, 389, 1100, 1295, 1993, 2401, 2683, 2689
LmnI	GCTCC	5 cut(s)	568, 660, 1506, 1817, 2854
Lsp1109I	GCAGC	3 cut(s)	1510, 1963, 2089
LweI	GCATC	3 cut(s)	1357, 1850, 2851
MaeI	CTAG	5 cut(s)	24, 1146, 1682, 1934, 2991
MaeII	ACGT	2 cut(s)	734, 2622
MaeIII	GTNAC	9 cut(s)	241, 280, 374, 479, 1125, 1487, 1768, 1889, 1985
MalI	GATC	9 cut(s)	199, 366, 391, 1102, 1297, 1995, 2403, 2685, 2691
MboI	GATC	9 cut(s)	197, 364, 389, 1100, 1295, 1993, 2401, 2683, 2689
MflI	RGATCY	3 cut(s)	2401, 2683, 2689
MhlI	GDGCHC	3 cut(s)	418, 1289, 2245
MlyI	GAGTC	4 cut(s)	567, 1252, 2351, 3011
MmeI	TCCRAC	3 cut(s)	489, 995, 1226
Mph1103I	ATGCAT	1 cut(s)	2306
MroXI	GAANNNNTTC	1 cut(s)	2168
MslI	CAYNNNNRTG	2 cut(s)	293, 737
MspCI	CTTAAG	1 cut(s)	1478
MspR9I	CCNGG	1 cut(s)	900
Mva1269I	GAATGC	1 cut(s)	2413
MvaI	CCWGG	1 cut(s)	900
MvnI	CGCG	2 cut(s)	2239, 2844
MwoI	GCNNNNNNNGC	3 cut(s)	1173, 1628, 2066
NcoI	CCATGG	2 cut(s)	738, 2963
NdeII	GATC	9 cut(s)	197, 364, 389, 1100, 1295, 1993, 2401, 2683, 2689
NlaIV	GGNNCC	8 cut(s)	662, 748, 1805, 2105, 2502, 2641, 2685, 2829
NmuCI	GTSAC	4 cut(s)	241, 280, 479, 1768
NsiI	ATGCAT	1 cut(s)	2306
NspI	RCATGY	4 cut(s)	1009, 1477, 2803, 2912
NspV	TTCGAA	1 cut(s)	17
PaeI	GCATGC	2 cut(s)	1477, 2803
PagI	TCATGA	1 cut(s)	2335
PciI	ACATGT	2 cut(s)	1005, 2908
PctI	GAATGC	1 cut(s)	2413
PdmI	GAANNNNTTC	1 cut(s)	2168
PfeI	GAWTC	7 cut(s)	614, 666, 865, 890, 985, 2821, 2972
PflFI	GACNNNGTC	1 cut(s)	1643
PflMI	CCANNNNNTGG	1 cut(s)	2693
PkrI	GCNGC	3 cut(s)	1500, 1978, 2079
PleI	GAGTC	4 cut(s)	567, 1251, 2350, 3010
PpsI	GAGTC	4 cut(s)	567, 1251, 2350, 3010
Ppu21I	YACGTR	1 cut(s)	2623
PpuMI	RGGWCCY	1 cut(s)	1186
PscI	ACATGT	2 cut(s)	1005, 2908
PshBI	ATTAAT	1 cut(s)	1230
Psp5II	RGGWCCY	1 cut(s)	1186
Psp6I	CCWGG	1 cut(s)	898
PspGI	CCWGG	1 cut(s)	898
PspN4I	GGNNCC	8 cut(s)	662, 748, 1805, 2105, 2502, 2641, 2685, 2829
PspPPI	RGGWCCY	1 cut(s)	1186
PsrI	GAACNNNNNNTAC	2 cut(s)	2253, 2285
PstNI	CAGNNNCTG	1 cut(s)	430
PsuI	RGATCY	3 cut(s)	2401, 2683, 2689
PsyI	GACNNNGTC	1 cut(s)	1643
RsaI	GTAC	5 cut(s)	1041, 1271, 1342, 2046, 2621
RsaNI	GTAC	5 cut(s)	1040, 1270, 1341, 2045, 2620
RseI	CAYNNNNRTG	2 cut(s)	293, 737
SatI	GCNGC	3 cut(s)	1499, 1977, 2078
Sau3AI	GATC	9 cut(s)	197, 364, 389, 1100, 1295, 1993, 2401, 2683, 2689
SchI	GAGTC	4 cut(s)	567, 1252, 2351, 3011
ScrFI	CCNGG	1 cut(s)	900
SduI	GDGCHC	3 cut(s)	418, 1289, 2245
SfaNI	GCATC	3 cut(s)	1357, 1850, 2851
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	6 cut(s)	702, 937, 1186, 1412, 1745, 2960
SmiMI	CAYNNNNRTG	2 cut(s)	293, 737
SmlI	CTYRAG	5 cut(s)	980, 1282, 1454, 1478, 3035
SmoI	CTYRAG	5 cut(s)	980, 1282, 1454, 1478, 3035
SphI	GCATGC	2 cut(s)	1477, 2803
SsiI	CCGC	2 cut(s)	1098, 1435
SspI	AATATT	1 cut(s)	1609
SspMI	CTAG	5 cut(s)	24, 1146, 1682, 1934, 2991
StyD4I	CCNGG	1 cut(s)	898
StyI	CCWWGG	4 cut(s)	547, 564, 738, 2963
TaaI	ACNGT	6 cut(s)	254, 1125, 1291, 1768, 2108, 2832
TaiI	ACGT	2 cut(s)	737, 2625
TaqI	TCGA	5 cut(s)	17, 448, 1879, 2184, 2473
TatI	WGTACW	1 cut(s)	1340
TfiI	GAWTC	7 cut(s)	614, 666, 865, 890, 985, 2821, 2972
TscAI	CASTG	6 cut(s)	79, 1137, 1294, 1549, 1987, 2587
TseFI	GTSAC	4 cut(s)	241, 280, 479, 1768
TseI	GCWGC	3 cut(s)	1498, 1976, 2077
Tsp45I	GTSAC	4 cut(s)	241, 280, 479, 1768
TspDTI	ATGAA	9 cut(s)	311, 1143, 1297, 1628, 2226, 2324, 2352, 2460, 3024
TspGWI	ACGGA	1 cut(s)	2968
TspRI	CASTG	6 cut(s)	79, 1137, 1294, 1549, 1987, 2587
Tth111I	GACNNNGTC	1 cut(s)	1643
Van91I	CCANNNNNTGG	1 cut(s)	2693
Vha464I	CTTAAG	1 cut(s)	1478
VneI	GTGCAC	1 cut(s)	2241
VpaK11BI	GGWCC	6 cut(s)	702, 937, 1186, 1412, 1745, 2960
VspI	ATTAAT	1 cut(s)	1230
XbaI	TCTAGA	1 cut(s)	1681
XceI	RCATGY	4 cut(s)	1009, 1477, 2803, 2912
XmnI	GAANNNNTTC	1 cut(s)	2168
XspI	CTAG	5 cut(s)	24, 1146, 1682, 1934, 2991
Zsp2I	ATGCAT	1 cut(s)	2306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.