MD04G1127800.v1.1

Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
21349113 .. 21350186
1074 bp
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UTR
Exon/CDS
Intron
MD04G1127800.v1.1.491

Sequence Viewer

Length: 252 bp
ATGATTGGTCCAGCAATTGTAATACCATTCCCCGCAAGAAAAGTATTGTTTTCCACTGCTCTTCTTTCAGGATGCTCTGCCGGTGGGTTAGCGACTCTTATACATTGTGATGACTTTCGACGTCTTCTGCCTAAGGATGCAACTGTCAAATGTCCTGCTGATGCAGGTTTTTTCCTTGATGATGAAATTCCTCGCTGTGCTTCGCTCGTGGACGTAGGCTTTACGCCGAACCACGTAAATCTCTTGTATTAG

Protein Analysis

84

Amino Acids

8.87

Weight (kDa)

5.99

Isoelectric Point (pI)

31.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAE PF03283 19 - 73 1.8e-18 Pectinacetylesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 124
Acc36I ACCTGC 1 cut(s) 155
AciI CCGC 1 cut(s) 33
AcsI RAATTY 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 8
AvaII GGWCC 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 132
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 155
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmsI GCATC 3 cut(s) 62, 127, 151
BpiI GAAGAC 1 cut(s) 116
BsaAI YACGTR 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 121
Bse118I RCCGGY 1 cut(s) 80
Bse21I CCTNAGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 77, 142
BsiSI CCGG 1 cut(s) 81
BspACI CCGC 1 cut(s) 33
BspMI ACCTGC 1 cut(s) 155
BspQI GCTCTTC 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BssNI GRCGYC 1 cut(s) 121
BssSI CACGAG 1 cut(s) 206
Bst2BI CACGAG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 121
BstBAI YACGTR 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 77, 142
BstV2I GAAGAC 1 cut(s) 116
Bsu36I CCTNAGG 1 cut(s) 132
BtsCI GGATG 2 cut(s) 77, 142
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
BveI ACCTGC 1 cut(s) 155
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 8
CviJI RGCY 1 cut(s) 219
CviKI_1 RGCY 1 cut(s) 219
DdeI CTNAG 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 8
Eco81I CCTNAGG 1 cut(s) 132
FaiI YATR 1 cut(s) 101
FauI CCCGC 1 cut(s) 40
FokI GGATG 2 cut(s) 84, 149
HapII CCGG 1 cut(s) 81
Hin1I GRCGYC 1 cut(s) 121
HinfI GANTC 1 cut(s) 94
HpaII CCGG 1 cut(s) 81
Hpy166II GTNNAC 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 69
Hpy8I GTNNAC 1 cut(s) 211
Hpy99I CGWCG 1 cut(s) 123
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 3 cut(s) 121, 213, 234
HpyCH4V TGCA 2 cut(s) 140, 164
HpyF3I CTNAG 1 cut(s) 132
HpySE526I ACGT 3 cut(s) 121, 213, 234
Hsp92I GRCGYC 1 cut(s) 121
LguI GCTCTTC 1 cut(s) 66
LpnPI CCDG 5 cut(s) 24, 54, 94, 150, 168
LweI GCATC 3 cut(s) 62, 127, 151
MaeII ACGT 3 cut(s) 121, 213, 234
MboII GAAGA 2 cut(s) 53, 116
MfeI CAATTG 1 cut(s) 15
MluCI AATT 2 cut(s) 15, 186
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 108
MspI CCGG 1 cut(s) 81
MunI CAATTG 1 cut(s) 15
PciSI GCTCTTC 1 cut(s) 66
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 235
PspPI GGNCC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 108
SapI GCTCTTC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 1 cut(s) 88
SetI ASST 4 cut(s) 124, 169, 216, 237
SfaNI GCATC 3 cut(s) 62, 127, 151
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 108
Sse9I AATT 2 cut(s) 15, 186
SsiI CCGC 1 cut(s) 33
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 3 cut(s) 124, 216, 237
TaqI TCGA 1 cut(s) 118
TasI AATT 2 cut(s) 15, 186
TscAI CASTG 1 cut(s) 61
TspDTI ATGAA 1 cut(s) 198
TspRI CASTG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 186
ZraI GACGTC 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.